GREMLIN Database
COPA - Copper-exporting P-type ATPase A
UniProt: O32220 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 802 (711)
Sequences: 10424 (6917)
Seq/√Len: 259.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
655_R659_E4.8191.00
203_T240_Y4.1711.00
532_A571_A3.9341.00
342_S375_L3.8691.00
336_E378_K3.8531.00
682_E685_R3.6761.00
562_E570_L3.6351.00
576_K616_D3.3851.00
494_D691_R3.3611.00
646_D669_N3.3281.00
632_T734_D3.2981.00
615_I620_A3.2831.00
567_A588_S3.2511.00
655_R673_E3.2391.00
687_Q708_T3.1481.00
678_Q681_A3.1091.00
513_D608_K3.0881.00
493_L694_A3.0811.00
305_R310_Q3.0271.00
651_T658_A3.0261.00
560_R572_E3.0071.00
322_I376_K2.9951.00
300_T311_I2.9311.00
531_A556_P2.9021.00
339_E376_K2.8981.00
322_I338_V2.7961.00
302_T311_I2.7941.00
80_E137_K2.6901.00
303_V310_Q2.6321.00
333_V379_A2.5721.00
342_S370_N2.5661.00
525_L621_G2.5611.00
331_I344_V2.5481.00
641_K668_A2.5311.00
304_V376_K2.5091.00
684_A708_T2.4741.00
662_A670_I2.4741.00
322_I378_K2.4341.00
694_A713_M2.4311.00
511_L547_G2.4031.00
671_I682_E2.3871.00
364_V377_I2.3731.00
305_R308_Q2.3541.00
579_L589_E2.3291.00
511_L623_V2.3201.00
659_E663_K2.3121.00
506_N628_T2.2991.00
302_T329_E2.2961.00
169_S270_T2.2821.00
634_R638_A2.2421.00
247_T262_Y2.2351.00
564_K585_L2.2101.00
547_G551_K2.2091.00
504_V665_A2.2081.00
646_D691_R2.2051.00
522_E551_K2.1991.00
570_L577_S2.1641.00
506_N631_D2.1411.00
643_L743_R2.1301.00
474_A744_M2.1291.00
337_V375_L2.1131.00
317_V333_V2.1051.00
578_I615_I2.0621.00
576_K615_I2.0391.00
338_V378_K2.0331.00
580_V613_V2.0271.00
599_Q602_E2.0171.00
215_V219_K2.0111.00
751_N797_R1.9621.00
586_M614_S1.9601.00
428_F447_F1.9441.00
528_F578_I1.9251.00
497_V683_I1.9181.00
359_N362_D1.9131.00
237_T241_A1.9101.00
600_M612_L1.9061.00
636_A739_A1.8741.00
303_V312_I1.8691.00
757_F761_G1.8681.00
641_K647_V1.8371.00
422_G426_L1.8321.00
427_T446_K1.8321.00
610_V622_L1.8221.00
317_V323_V1.8161.00
88_A108_F1.8131.00
211_W215_V1.8101.00
659_E670_I1.8081.00
687_Q710_D1.8061.00
494_D692_Q1.7931.00
128_K138_L1.7781.00
635_K736_N1.7771.00
84_C87_C1.7691.00
717_T733_G1.7651.00
530_A548_V1.7621.00
214_Y237_T1.7581.00
497_V686_L1.7561.00
393_K397_E1.7441.00
495_T648_I1.7361.00
497_V650_M1.7301.00
611_M625_V1.7231.00
685_R689_E1.7161.00
638_A642_E1.7141.00
612_L619_A1.7131.00
613_V621_G1.7111.00
512_T608_K1.7051.00
650_M682_E1.7011.00
165_S209_I1.6991.00
309_E324_Y1.6991.00
129_E133_K1.6981.00
411_Q415_I1.6881.00
304_V309_E1.6851.00
123_S126_D1.6821.00
681_A684_A1.6791.00
649_M658_A1.6781.00
639_R743_R1.6781.00
305_R321_D1.6771.00
629_I665_A1.6751.00
529_A613_V1.6671.00
637_V647_V1.6621.00
648_I669_N1.6541.00
303_V321_D1.6411.00
586_M591_V1.6361.00
582_T585_L1.6311.00
337_V344_V1.6111.00
520_F620_A1.6081.00
632_T736_N1.6071.00
602_E606_E1.5921.00
570_L579_L1.5881.00
132_D137_K1.5791.00
336_E380_V1.5771.00
495_T691_R1.5701.00
680_A708_T1.5651.00
477_F740_D1.5651.00
496_I694_A1.5641.00
103_N116_E1.5591.00
335_G377_I1.5581.00
634_R664_E1.5581.00
324_Y376_K1.5541.00
379_A382_V1.5521.00
320_N378_K1.5331.00
473_R477_F1.5331.00
206_Q214_Y1.5291.00
751_N795_A1.5261.00
671_I685_R1.5241.00
527_Q574_G1.5191.00
537_E563_A1.5161.00
466_S795_A1.5151.00
349_I365_T1.5131.00
531_A555_I1.5111.00
166_A270_T1.5021.00
161_R212_P1.5011.00
578_I620_A1.4991.00
527_Q556_P1.4981.00
542_E546_A1.4961.00
199_F244_L1.4951.00
635_K639_R1.4881.00
173_L267_I1.4871.00
547_G550_D1.4791.00
234_L421_L1.4781.00
302_T309_E1.4761.00
564_K570_L1.4681.00
337_V340_G1.4651.00
233_A237_T1.4631.00
336_E361_G1.4631.00
572_E577_S1.4531.00
684_A688_K1.4491.00
423_I771_A1.4471.00
341_R357_D1.4451.00
579_L585_L1.4451.00
430_I434_W1.4411.00
346_E358_K1.4361.00
470_G748_T1.4351.00
492_R692_Q1.4351.00
323_V377_I1.4351.00
684_A687_Q1.4341.00
363_S380_V1.4331.00
524_D527_Q1.4321.00
506_N510_R1.4321.00
510_R546_A1.4271.00
556_P574_G1.4251.00
214_Y233_A1.4211.00
498_L504_V1.4101.00
533_E541_G1.4081.00
301_A332_P1.4081.00
523_K551_K1.4081.00
343_A357_D1.4051.00
341_R359_N1.4031.00
651_T672_A1.4001.00
325_V377_I1.3981.00
363_S381_N1.3971.00
344_V375_L1.3901.00
345_D371_A1.3861.00
544_I623_V1.3781.00
732_R737_S1.3781.00
510_R628_T1.3721.00
509_P540_L1.3711.00
603_L624_A1.3631.00
583_R587_E1.3591.00
532_A578_I1.3551.00
561_F569_I1.3531.00
583_R612_L1.3491.00
713_M738_I1.3481.00
428_F432_Y1.3451.00
162_L274_L1.3441.00
118_N121_E1.3411.00
579_L614_S1.3351.00
646_D668_A1.3301.00
95_L113_V1.3281.00
512_T626_A1.3231.00
504_V629_I1.3221.00
558_L571_A1.3131.00
578_I613_V1.3101.00
516_P621_G1.3091.00
261_Y264_T1.3041.00
95_L127_L1.3031.00
498_L647_V1.3001.00
324_Y374_F1.2981.00
126_D129_E1.2981.00
323_V379_A1.2961.00
75_A117_Y1.2921.00
632_T636_A1.2881.00
516_P525_L1.2881.00
304_V324_Y1.2791.00
608_K624_A1.2791.00
605_A656_R1.2731.00
481_F728_I1.2721.00
754_Q794_N1.2661.00
521_E524_D1.2601.00
130_A134_L1.2561.00
681_A685_R1.2561.00
629_I661_I1.2551.00
517_F596_L1.2531.00
532_A569_I1.2531.00
374_F535_G1.2511.00
511_L625_V1.2491.00
92_E96_N1.2471.00
426_L430_I1.2451.00
643_L746_R1.2451.00
383_G386_T1.2411.00
102_A116_E1.2381.00
313_P316_E1.2311.00
534_T549_K1.2301.00
473_R476_E1.2291.00
96_N104_A1.2281.00
669_N689_E1.2241.00
527_Q531_A1.2231.00
564_K567_A1.2231.00
95_L104_A1.2221.00
531_A558_L1.2221.00
529_A623_V1.2201.00
336_E363_S1.2161.00
658_A670_I1.2161.00
507_G627_D1.2151.00
432_Y440_F1.2131.00
530_A555_I1.2081.00
558_L573_A1.1951.00
466_S751_N1.1921.00
96_N103_N1.1891.00
98_I130_A1.1871.00
573_A578_I1.1851.00
749_M753_K1.1841.00
532_A580_V1.1741.00
579_L591_V1.1721.00
520_F525_L1.1691.00
515_I603_L1.1651.00
302_T326_K1.1601.00
546_A549_K1.1591.00
591_V614_S1.1591.00
206_Q265_S1.1571.00
106_V113_V1.1531.00
339_E360_P1.1531.00
76_E112_T1.1531.00
128_K132_D1.1521.00
205_V266_A1.1491.00
567_A675_L1.1451.00
337_V362_D1.1451.00
559_T572_E1.1421.00
101_V127_L1.1411.00
415_I419_I1.1381.00
707_A725_T1.1311.00
129_E132_D1.1251.00
591_V619_A1.1221.00
515_I599_Q1.1211.00
304_V322_I1.1181.00
491_H749_M1.1161.00
218_Y222_R1.1131.00
674_V678_Q1.1091.00
80_E139_K1.1071.00
558_L561_F1.1051.00
639_R643_L1.1031.00
421_L425_V1.1021.00
596_L619_A1.1001.00
490_T711_I1.0991.00
650_M674_V1.0981.00
439_D442_E1.0981.00
162_L166_A1.0951.00
559_T575_G1.0941.00
281_K285_R1.0941.00
514_A547_G1.0931.00
516_P522_E1.0901.00
490_T741_A1.0891.00
794_N797_R1.0871.00
518_G618_E1.0851.00
581_G585_L1.0781.00
79_I82_M1.0761.00
601_E605_A1.0711.00
573_A576_K1.0711.00
525_L613_V1.0711.00
210_G269_L1.0701.00
303_V323_V1.0671.00
331_I364_V1.0651.00
327_P342_S1.0621.00
529_A580_V1.0621.00
567_A584_K1.0591.00
163_I167_V1.0551.00
348_M368_T1.0531.00
78_D141_K1.0471.00
662_A667_I1.0471.00
167_V171_P1.0431.00
597_L601_E1.0411.00
206_Q237_T1.0411.00
639_R642_E1.0391.00
327_P563_A1.0371.00
312_I316_E1.0361.00
517_F619_A1.0341.00
514_A623_V1.0341.00
311_I329_E1.0331.00
292_K476_E1.0321.00
643_L742_I1.0301.00
157_K161_R1.0281.00
364_V375_L1.0261.00
432_Y443_A1.0251.00
102_A118_N1.0251.00
440_F444_I1.0241.00
76_E114_T1.0221.00
781_G785_A1.0211.00
327_P370_N1.0211.00
579_L586_M1.0201.00
489_K692_Q1.0191.00
172_L202_A1.0171.00
77_F138_L1.0171.00
747_L750_K1.0141.00
95_L98_I1.0121.00
655_R672_A1.0111.00
751_N754_Q1.0091.00
677_E681_A1.0091.00
570_L589_E1.0091.00
635_K638_A1.0071.00
94_R134_L1.0071.00
498_L738_I1.0061.00
323_V333_V1.0061.00
199_F240_Y1.0061.00
603_L608_K1.0041.00
508_K546_A1.0031.00
526_L547_G1.0001.00
319_V382_V0.9961.00
91_I134_L0.9951.00
655_R670_I0.9941.00
742_I746_R0.9921.00
112_T396_E0.9911.00
490_T742_I0.9911.00
671_I674_V0.9901.00
639_R736_N0.9881.00
540_L625_V0.9871.00
314_I317_V0.9821.00
453_I766_G0.9811.00
156_R160_A0.9811.00
77_F128_K0.9791.00
98_I122_A0.9791.00
692_Q710_D0.9741.00
643_L739_A0.9721.00
493_L692_Q0.9711.00
335_G364_V0.9691.00
226_A230_V0.9671.00
162_L277_L0.9661.00
654_N657_T0.9641.00
637_V641_K0.9631.00
496_I696_V0.9631.00
220_A227_N0.9631.00
89_N93_K0.9631.00
714_A726_A0.9591.00
483_G727_D0.9591.00
318_L321_D0.9531.00
236_T269_L0.9531.00
390_H393_K0.9511.00
209_I273_L0.9501.00
88_A91_I0.9491.00
687_Q693_T0.9491.00
240_Y244_L0.9491.00
206_Q236_T0.9481.00
532_A613_V0.9471.00
489_K492_R0.9451.00
513_D624_A0.9441.00
429_L433_L0.9421.00
292_K721_I0.9391.00
98_I127_L0.9391.00
172_L266_A0.9371.00
79_I113_V0.9361.00
317_V379_A0.9361.00
305_R312_I0.9351.00
494_D690_G0.9351.00
648_I682_E0.9341.00
344_V364_V0.9301.00
516_P519_R0.9301.00
530_A545_I0.9301.00
217_A226_A0.9291.00
390_H677_E0.9291.00
654_N673_E0.9241.00
82_M87_C0.9241.00
504_V637_V0.9241.00
325_V331_I0.9231.00
555_I558_L0.9221.00
527_Q553_L0.9221.00
685_R688_K0.9211.00
584_K673_E0.9191.00
706_L722_A0.9191.00
75_A124_V0.9191.00
696_V738_I0.9171.00
323_V332_P0.9161.00
326_K329_E0.9151.00
650_M671_I0.9151.00
286_S472_G0.9151.00
332_P377_I0.9141.00
496_I645_L0.9141.00
649_M667_I0.9131.00
303_V317_V0.9131.00
220_A230_V0.9121.00
194_N198_Q0.9111.00
337_V342_S0.9111.00
122_A126_D0.9101.00
534_T555_I0.9091.00
638_A641_K0.9071.00
766_G779_I0.9061.00
789_V793_L0.9061.00
169_S205_V0.9031.00
176_M179_H0.9021.00
204_P208_L0.9001.00
331_I375_L0.9001.00
195_P260_L0.8991.00
268_L781_G0.8971.00
366_G386_T0.8931.00
617_G620_A0.8911.00
430_I773_G0.8871.00
528_F615_I0.8861.00
583_R604_E0.8851.00
531_A557_K0.8841.00
156_R159_T0.8831.00
639_R739_A0.8831.00
79_I138_L0.8821.00
245_Y249_Q0.8821.00
128_K140_L0.8801.00
382_V385_D0.8771.00
632_T635_K0.8771.00
737_S740_D0.8761.00
327_P537_E0.8761.00
427_T450_V0.8741.00
599_Q603_L0.8731.00
583_R597_L0.8721.00
155_E159_T0.8721.00
513_D606_E0.8711.00
160_A164_F0.8701.00
491_H745_S0.8701.00
680_A684_A0.8691.00
516_P520_F0.8681.00
537_E561_F0.8661.00
92_E402_K0.8661.00
504_V649_M0.8661.00
629_I634_R0.8651.00
489_K710_D0.8641.00
645_L742_I0.8631.00
651_T670_I0.8621.00
498_L640_L0.8621.00
600_M604_E0.8611.00
524_D576_K0.8571.00
602_E605_A0.8530.99
446_K449_A0.8510.99
586_M589_E0.8490.99
381_N385_D0.8490.99
365_T368_T0.8440.99
412_I760_L0.8430.99
513_D603_L0.8430.99
579_L617_G0.8420.99
517_F520_F0.8420.99
214_Y236_T0.8420.99
747_L751_N0.8410.99
159_T163_I0.8410.99
515_I622_L0.8410.99
512_T624_A0.8400.99
512_T603_L0.8390.99
523_K553_L0.8380.99
442_E446_K0.8370.99
353_S657_T0.8370.99
639_R740_D0.8350.99
131_V138_L0.8310.99
514_A526_L0.8300.99
763_N784_M0.8300.99
673_E678_Q0.8290.99
683_I695_M0.8280.99
761_G765_L0.8260.99
343_A372_N0.8260.99
112_T141_K0.8250.99
497_V674_V0.8240.99
490_T728_I0.8230.99
495_T646_D0.8230.99
496_I647_V0.8220.99
176_M198_Q0.8220.99
338_V360_P0.8210.99
714_A718_G0.8210.99
341_R560_R0.8200.99
420_V767_I0.8170.99
104_A113_V0.8170.99
407_R411_Q0.8170.99
331_I377_I0.8160.99
128_K137_K0.8150.99
346_E368_T0.8150.99
530_A553_L0.8150.99
547_G553_L0.8130.99
349_I387_A0.8130.99
466_S748_T0.8130.99
483_G486_H0.8120.99
288_D291_K0.8120.99
358_K362_D0.8110.99
325_V332_P0.8100.99
78_D139_K0.8090.99
533_E580_V0.8070.99
598_A601_E0.8050.99
531_A573_A0.8040.99
490_T493_L0.8030.99
557_K574_G0.8030.99
493_L742_I0.8020.99
200_A204_P0.8020.99
199_F203_T0.7990.99
217_A230_V0.7990.99
219_K222_R0.7980.99
94_R98_I0.7970.99
586_M590_Q0.7970.99
428_F443_A0.7960.99
381_N390_H0.7950.99
728_I741_A0.7940.99
210_G236_T0.7910.99
244_L247_T0.7910.99
633_S636_A0.7880.99
525_L529_A0.7870.99
294_M723_M0.7860.99
524_D528_F0.7850.99
786_F790_S0.7850.99
431_W443_A0.7850.99
285_R288_D0.7840.99
546_A550_D0.7840.99
382_V386_T0.7840.99
751_N794_N0.7840.99
372_N565_V0.7820.99
195_P247_T0.7810.99
301_A317_V0.7810.99
633_S637_V0.7810.99
329_E537_E0.7800.99
630_K733_G0.7780.99
636_A735_L0.7780.99
428_F440_F0.7780.99
366_G387_A0.7770.99
485_E489_K0.7770.99
325_V364_V0.7760.99
632_T735_L0.7760.99
443_A447_F0.7750.99
715_I718_G0.7730.99
594_G597_L0.7730.99
230_V421_L0.7720.99
295_K299_K0.7720.99
341_R360_P0.7710.99
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228_M455_C0.5120.89
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549_K552_G0.5110.89
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603_L606_E0.5080.89
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98_I101_V0.5070.89
268_L272_I0.5070.89
391_I704_P0.5060.89
229_D276_K0.5060.89
575_G616_D0.5060.89
514_A553_L0.5050.88
567_A582_T0.5050.88
608_K664_E0.5050.88
111_E151_K0.5040.88
430_I772_L0.5020.88
581_G614_S0.5020.88
77_F115_V0.5020.88
79_I108_F0.5010.88
245_Y252_G0.5010.88
407_R410_D0.5010.88
161_R164_F0.5000.88
384_K393_K0.5000.88
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4bbjA 1 0.808 100 0.239 Contact Map
3j09A 2 0.8815 100 0.251 Contact Map
4umwA 1 0.7506 100 0.275 Contact Map
3j08A 2 0.7843 100 0.323 Contact Map
3b8cA 1 0.7706 100 0.507 Contact Map
1mhsA 2 0.8404 100 0.509 Contact Map
3ixzA 1 0.7968 100 0.525 Contact Map
2zxeA 1 0.7868 100 0.526 Contact Map
3ar4A 1 0.783 100 0.533 Contact Map
3skxA 1 0.3254 100 0.788 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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