GREMLIN Database
YURZ - Uncharacterized protein YurZ
UniProt: O32166 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 125 (99)
Sequences: 3076 (2010)
Seq/√Len: 202.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
52_T55_E6.5521.00
54_R89_N4.1191.00
58_L93_A3.7061.00
74_I115_Q3.2851.00
80_C85_A3.0671.00
36_R40_E2.8521.00
65_I97_A2.6841.00
33_L36_R2.1541.00
94_V113_V2.0641.00
57_Q76_H1.8611.00
86_S89_N1.7351.00
61_L80_C1.6331.00
57_Q83_Q1.5761.00
79_G82_D1.5581.00
113_V117_I1.5171.00
81_L117_I1.5041.00
65_I94_V1.4621.00
87_E118_E1.4601.00
34_M110_V1.4081.00
48_G92_E1.3971.00
77_T90_I1.3741.00
61_L90_I1.3401.00
101_G105_A1.3321.00
81_L87_E1.3051.00
42_T99_A1.2951.00
73_M77_T1.2751.00
77_T113_V1.2691.00
94_V110_V1.2411.00
74_I112_V1.2261.00
30_K91_L1.2121.00
61_L73_M1.1881.00
87_E117_I1.1791.00
78_K82_D1.1571.00
26_T29_Q1.1531.00
80_C90_I1.1401.00
56_K60_A1.1291.00
35_G39_N1.1181.00
53_E83_Q1.0961.00
69_D105_A1.0871.00
85_A90_I1.0711.00
72_C108_Q1.0671.00
31_M95_S1.0641.00
54_R85_A1.0421.00
62_G65_I1.0201.00
70_E108_Q1.0151.00
96_V100_F0.9961.00
31_M91_L0.9751.00
31_M34_M0.9670.99
33_L91_L0.9650.99
40_E44_Q0.9630.99
70_E74_I0.9600.99
78_K119_E0.9590.99
63_I66_N0.9460.99
25_G28_E0.9450.99
67_A105_A0.9430.99
58_L85_A0.9180.99
66_N101_G0.9030.99
34_M38_F0.8940.99
98_A106_F0.8880.99
38_F42_T0.8850.99
29_Q32_P0.8810.99
115_Q119_E0.8490.99
114_Q119_E0.8330.98
97_A101_G0.8320.98
115_Q118_E0.8220.98
77_T117_I0.8170.98
22_H25_G0.8120.98
43_E47_A0.8070.98
63_I67_A0.8040.98
80_C83_Q0.7940.98
77_T116_C0.7880.98
63_I101_G0.7790.98
34_M95_S0.7780.98
64_A73_M0.7730.98
71_Y108_Q0.7670.97
59_I93_A0.7640.97
46_F60_A0.7630.97
69_D108_Q0.7610.97
75_Y79_G0.7530.97
21_K25_G0.7400.97
45_C48_G0.7390.97
90_I113_V0.7340.97
91_L113_V0.7340.97
94_V109_G0.7310.97
55_E89_N0.7310.97
88_E91_L0.7300.97
48_G53_E0.7290.96
65_I93_A0.7280.96
89_N92_E0.7210.96
53_E79_G0.7150.96
107_S111_T0.7020.96
59_I62_G0.6870.95
69_D72_C0.6860.95
68_Q105_A0.6820.95
23_G75_Y0.6750.95
66_N97_A0.6740.95
61_L77_T0.6660.94
60_A64_A0.6620.94
99_A103_G0.6600.94
51_L55_E0.6580.94
90_I117_I0.6540.94
61_L85_A0.6520.94
112_V115_Q0.6480.93
71_Y111_T0.6280.92
71_Y107_S0.6230.92
30_K110_V0.6200.92
67_A102_G0.6180.92
28_E35_G0.6140.91
33_L37_K0.6140.91
73_M113_V0.6050.91
35_G110_V0.6030.91
42_T79_G0.5940.90
57_Q96_V0.5850.89
61_L94_V0.5840.89
23_G26_T0.5780.89
27_F32_P0.5760.89
24_L28_E0.5750.88
54_R86_S0.5730.88
76_H104_A0.5730.88
87_E91_L0.5700.88
100_F104_A0.5700.88
50_S88_E0.5590.87
62_G97_A0.5570.87
32_P36_R0.5550.87
48_G52_T0.5540.87
51_L59_I0.5520.86
59_I63_I0.5480.86
103_G107_S0.5450.86
26_T114_Q0.5420.85
57_Q79_G0.5400.85
67_A101_G0.5350.85
41_F44_Q0.5330.84
21_K26_T0.5320.84
41_F99_A0.5310.84
33_L95_S0.5290.84
70_E112_V0.5290.84
27_F91_L0.5260.84
55_E85_A0.5220.83
63_I97_A0.5210.83
48_G56_K0.5190.83
50_S92_E0.5180.83
21_K24_L0.5180.83
26_T115_Q0.5090.82
31_M102_G0.5060.81
37_K44_Q0.5060.81
43_E46_F0.5020.81
61_L93_A0.5020.81
114_Q118_E0.5000.81
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4g9qA 3 0.976 99.9 0.325 Contact Map
2q0tA 3 0.976 99.8 0.373 Contact Map
2af7A 6 0.96 99.8 0.396 Contact Map
2qeuA 6 0.952 99.8 0.405 Contact Map
3d7iA 6 0.784 99.8 0.406 Contact Map
3beyA 6 0.752 99.8 0.418 Contact Map
1vkeA 6 0.896 99.8 0.418 Contact Map
1p8cA 6 0.896 99.8 0.421 Contact Map
2cwqA 4 0.928 99.7 0.446 Contact Map
2ouwA 6 0.952 99.6 0.499 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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