SUFS - BACSU - GREMLIN Contacts

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SUFS - Cysteine desulfurase SufS

UniProt:	O32164	Sequences: MNITDIREQFPILHQQVNGHDLVYLDSAATSQKPRAVIETLDKYYNQYNSNVHRGVHTLGTRATDGYEGAREKVRKFINAKSMAEIIFTKGTTTSLNMVALSYARANLKPGDEVVITYMEHHANIIPWQQAVKATGATLKYIPLQEDGTISLEDVRETVTSNTKIVAVSHVSNVLGTVNPIKEMAKIAHDNGAVIVVDGAQSTPHMKIDVQDLDCDFFALSSHKMCGPTGVGVLYGKKALLENMEPAEFGGEMIDFVGLYESTWKELPWKFEAGTPIIAGAIGLGAAIDFLEEIGLDEISRHEHKLAAYALERFRQLDGVTVYGPEERAGLVTFNLDDVHPHDVATVLDAEGIAVRAGHHCAQPLMKWLDVTATARASFYLYNTEEEIDKLVEALQKTKEYFTNVF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	406 (335)
Sequences:	44139 (29804)
Seq/√Len:	1628.4

ECOLI - CSDA SUFS ISCS SERC DCEA DCEB LTAE
BACSU - SUFS ISCS2 ISCS ISCS1 YCBU PUCG SERC NTDA
HALSA - CSD Q9HR11 Q9HMR6 MFNA Q9HHV3
SULSO - Q97WK1 Q97VM5 Q97ZK0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
113_E	140_K	3.635	1.00
313_R	392_V	3.418	1.00
309_Y	389_D	3.405	1.00
185_A	195_I	3.383	1.00
309_Y	385_E	3.120	1.00
180_P	183_E	2.975	1.00
113_E	160_T	2.820	1.00
156_R	190_D	2.807	1.00
113_E	138_T	2.692	1.00
156_R	187_I	2.663	1.00
154_D	157_E	2.626	1.00
209_D	212_D	2.625	1.00
170_H	202_S	2.609	1.00
351_E	397_K	2.479	1.00
185_A	189_H	2.477	1.00
118_Y	143_P	2.432	1.00
73_K	289_D	2.422	1.00
286_A	289_D	2.336	1.00
317_L	396_Q	2.328	1.00
188_A	193_A	2.273	1.00
199_G	218_F	2.265	1.00
313_R	316_Q	2.241	1.00
220_L	233_V	2.237	1.00
351_E	394_A	2.215	1.00
313_R	389_D	2.189	1.00
309_Y	313_R	2.146	1.00
166_V	188_A	2.136	1.00
154_D	158_T	2.117	1.00
182_K	186_K	2.064	1.00
113_E	163_T	2.048	1.00
277_I	280_G	2.012	1.00
390_K	394_A	2.000	1.00
186_K	190_D	1.929	1.00
42_D	46_N	1.928	1.00
151_S	154_D	1.927	1.00
189_H	216_D	1.925	1.00
112_D	164_K	1.922	1.00
308_A	312_E	1.903	1.00
313_R	396_Q	1.902	1.00
152_L	183_E	1.886	1.00
321_T	335_N	1.860	1.00
302_H	306_L	1.857	1.00
305_K	385_E	1.840	1.00
347_V	398_T	1.829	1.00
188_A	195_I	1.764	1.00
377_A	391_L	1.760	1.00
90_K	94_T	1.745	1.00
43_K	47_Q	1.731	1.00
301_R	305_K	1.725	1.00
156_R	191_N	1.725	1.00
140_K	158_T	1.717	1.00
165_I	196_V	1.687	1.00
347_V	350_A	1.684	1.00
183_E	186_K	1.678	1.00
79_N	209_D	1.677	1.00
113_E	162_N	1.671	1.00
143_P	154_D	1.659	1.00
168_V	195_I	1.649	1.00
76_K	292_E	1.645	1.00
182_K	212_D	1.626	1.00
152_L	187_I	1.601	1.00
197_V	215_C	1.593	1.00
187_I	191_N	1.586	1.00
96_L	123_A	1.585	1.00
302_H	305_K	1.580	1.00
316_Q	396_Q	1.571	1.00
304_H	308_A	1.561	1.00
142_I	158_T	1.553	1.00
74_V	233_V	1.550	1.00
159_V	187_I	1.548	1.00
311_L	332_V	1.538	1.00
297_D	301_R	1.518	1.00
168_V	184_M	1.511	1.00
384_T	387_E	1.507	1.00
99_V	217_F	1.485	1.00
340_H	343_D	1.474	1.00
310_A	379_F	1.463	1.00
112_D	162_N	1.462	1.00
335_N	373_A	1.458	1.00
153_E	156_R	1.453	1.00
333_T	374_T	1.446	1.00
153_E	157_E	1.444	1.00
72_E	76_K	1.443	1.00
116_I	128_W	1.428	1.00
215_C	218_F	1.416	1.00
323_Y	335_N	1.404	1.00
69_G	73_K	1.401	1.00
85_E	238_K	1.393	1.00
307_A	311_L	1.379	1.00
145_Q	149_T	1.370	1.00
109_K	112_D	1.369	1.00
385_E	389_D	1.362	1.00
156_R	160_T	1.362	1.00
394_A	397_K	1.359	1.00
89_T	95_S	1.356	1.00
156_R	183_E	1.331	1.00
300_S	304_H	1.326	1.00
309_Y	388_I	1.314	1.00
155_V	184_M	1.311	1.00
115_V	158_T	1.307	1.00
73_K	292_E	1.301	1.00
160_T	163_T	1.301	1.00
321_T	337_D	1.297	1.00
209_D	213_L	1.296	1.00
100_A	128_W	1.284	1.00
73_K	285_G	1.281	1.00
295_G	298_E	1.249	1.00
312_E	315_R	1.249	1.00
40_T	43_K	1.247	1.00
310_A	388_I	1.234	1.00
89_T	98_M	1.227	1.00
73_K	76_K	1.226	1.00
118_Y	141_Y	1.225	1.00
103_Y	194_V	1.224	1.00
140_K	160_T	1.220	1.00
92_T	200_A	1.218	1.00
72_E	75_R	1.210	1.00
343_D	347_V	1.200	1.00
72_E	83_M	1.188	1.00
115_V	163_T	1.181	1.00
347_V	351_E	1.176	1.00
152_L	156_R	1.173	1.00
126_I	129_Q	1.171	1.00
40_T	286_A	1.165	1.00
41_L	283_G	1.160	1.00
386_E	389_D	1.152	1.00
68_E	72_E	1.148	1.00
217_F	236_G	1.145	1.00
187_I	190_D	1.145	1.00
247_A	251_G	1.144	1.00
166_V	193_A	1.143	1.00
181_I	197_V	1.139	1.00
390_K	393_E	1.139	1.00
313_R	317_L	1.137	1.00
65_D	69_G	1.137	1.00
138_T	160_T	1.132	1.00
224_K	227_G	1.132	1.00
346_T	350_A	1.131	1.00
116_I	141_Y	1.127	1.00
145_Q	151_S	1.126	1.00
393_E	397_K	1.112	1.00
129_Q	133_K	1.110	1.00
189_H	195_I	1.108	1.00
289_D	293_E	1.104	1.00
392_V	396_Q	1.079	1.00
285_G	289_D	1.076	1.00
298_E	301_R	1.074	1.00
389_D	393_E	1.067	1.00
170_H	181_I	1.064	1.00
342_H	346_T	1.060	1.00
125_I	141_Y	1.059	1.00
81_K	238_K	1.056	1.00
96_L	196_V	1.055	1.00
298_E	302_H	1.054	1.00
295_G	299_I	1.053	1.00
196_V	219_A	1.052	1.00
388_I	392_V	1.051	1.00
309_Y	312_E	1.050	1.00
348_L	355_V	1.050	1.00
222_S	284_L	1.049	1.00
330_G	333_T	1.045	1.00
175_L	369_L	1.043	1.00
306_L	388_I	1.042	1.00
208_I	212_D	1.041	1.00
313_R	393_E	1.040	1.00
95_S	219_A	1.035	1.00
84_A	238_K	1.034	1.00
311_L	315_R	1.028	1.00
101_L	249_F	1.026	1.00
353_I	390_K	1.011	1.00
147_D	325_P	1.009	1.00
81_K	237_K	1.003	1.00
179_N	184_M	0.998	1.00
228_P	283_G	0.996	1.00
155_V	166_V	0.995	1.00
81_K	85_E	0.994	1.00
250_G	253_M	0.993	1.00
312_E	316_Q	0.984	1.00
70_A	285_G	0.983	1.00
216_D	237_K	0.978	1.00
248_E	251_G	0.977	1.00
159_V	191_N	0.973	1.00
225_M	284_L	0.973	1.00
305_K	309_Y	0.965	1.00
86_I	235_Y	0.954	1.00
66_G	282_I	0.950	1.00
210_V	213_L	0.946	1.00
96_L	219_A	0.945	1.00
167_A	196_V	0.944	1.00
185_A	214_D	0.943	1.00
248_E	253_M	0.940	1.00
345_A	355_V	0.938	1.00
159_V	193_A	0.938	1.00
108_L	137_A	0.937	1.00
97_N	101_L	0.936	1.00
203_T	220_L	0.936	1.00
249_F	253_M	0.932	1.00
153_E	183_E	0.927	1.00
128_W	139_L	0.925	1.00
168_V	181_I	0.925	1.00
328_R	331_L	0.924	1.00
48_Y	62_R	0.924	1.00
310_A	391_L	0.922	1.00
171_V	202_S	0.918	1.00
344_V	398_T	0.918	1.00
160_T	191_N	0.918	1.00
353_I	391_L	0.918	1.00
111_G	164_K	0.913	1.00
159_V	163_T	0.912	1.00
226_C	380_Y	0.912	1.00
79_N	211_Q	0.904	1.00
78_I	220_L	0.903	1.00
170_H	218_F	0.903	1.00
85_E	239_A	0.900	1.00
247_A	253_M	0.900	1.00
210_V	214_D	0.896	1.00
125_I	129_Q	0.893	1.00
75_R	86_I	0.890	1.00
69_G	285_G	0.886	1.00
355_V	375_A	0.885	1.00
242_E	245_E	0.883	1.00
81_K	211_Q	0.881	1.00
130_Q	249_F	0.880	1.00
194_V	217_F	0.878	1.00
286_A	290_F	0.868	1.00
353_I	394_A	0.867	1.00
282_I	285_G	0.865	1.00
329_A	332_V	0.858	1.00
166_V	184_M	0.856	1.00
346_T	349_D	0.848	1.00
343_D	346_T	0.847	1.00
77_F	203_T	0.846	1.00
108_L	112_D	0.842	1.00
115_V	142_I	0.842	1.00
73_K	290_F	0.841	1.00
43_K	46_N	0.839	1.00
66_G	69_G	0.839	1.00
116_I	120_E	0.837	1.00
345_A	357_A	0.836	1.00
142_I	154_D	0.833	1.00
119_M	179_N	0.833	1.00
99_V	196_V	0.829	1.00
132_V	137_A	0.827	1.00
334_F	377_A	0.823	1.00
249_F	252_E	0.819	1.00
116_I	139_L	0.816	1.00
309_Y	392_V	0.812	1.00
78_I	235_Y	0.810	1.00
188_A	191_N	0.808	1.00
68_E	71_R	0.806	1.00
182_K	208_I	0.805	1.00
140_K	163_T	0.805	1.00
306_L	385_E	0.801	1.00
159_V	166_V	0.798	1.00
210_V	235_Y	0.798	1.00
331_L	334_F	0.798	1.00
247_A	250_G	0.797	1.00
103_Y	217_F	0.792	1.00
266_E	269_W	0.791	1.00
81_K	239_A	0.791	1.00
299_I	302_H	0.785	1.00
86_I	89_T	0.783	1.00
237_K	240_L	0.783	1.00
80_A	235_Y	0.778	1.00
329_A	334_F	0.776	1.00
217_F	240_L	0.775	1.00
171_V	329_A	0.774	1.00
67_Y	281_A	0.773	1.00
328_R	332_V	0.772	1.00
310_A	377_A	0.768	1.00
331_L	335_N	0.768	1.00
329_A	333_T	0.767	1.00
247_A	252_E	0.766	1.00
168_V	179_N	0.766	1.00
386_E	390_K	0.766	1.00
183_E	187_I	0.765	1.00
285_G	288_I	0.760	1.00
310_A	392_V	0.758	1.00
75_R	80_A	0.758	1.00
314_F	395_L	0.758	1.00
196_V	217_F	0.756	1.00
155_V	187_I	0.756	1.00
115_V	140_K	0.755	1.00
41_L	45_Y	0.754	1.00
332_V	335_N	0.754	1.00
299_I	381_L	0.753	1.00
322_V	325_P	0.753	1.00
265_K	269_W	0.752	1.00
126_I	130_Q	0.752	1.00
170_H	213_L	0.749	1.00
103_Y	107_N	0.748	1.00
184_M	195_I	0.748	1.00
241_L	244_M	0.746	1.00
194_V	216_D	0.745	1.00
189_H	214_D	0.745	1.00
49_N	52_V	0.745	1.00
344_V	395_L	0.737	1.00
182_K	213_L	0.737	1.00
307_A	332_V	0.734	1.00
114_V	165_I	0.732	1.00
124_N	167_A	0.729	1.00
185_A	213_L	0.728	1.00
171_V	328_R	0.727	1.00
194_V	240_L	0.726	1.00
302_H	385_E	0.725	1.00
207_K	297_D	0.723	1.00
77_F	297_D	0.723	1.00
152_L	155_V	0.722	1.00
299_I	303_E	0.721	1.00
188_A	192_G	0.718	1.00
165_I	194_V	0.717	1.00
222_S	231_V	0.717	1.00
383_N	388_I	0.717	1.00
339_V	343_D	0.715	1.00
114_V	128_W	0.713	1.00
130_Q	134_A	0.712	1.00
186_K	189_H	0.712	1.00
169_S	173_N	0.711	1.00
56_V	60_G	0.706	1.00
70_A	88_F	0.705	1.00
99_V	103_Y	0.705	1.00
350_A	358_G	0.704	1.00
70_A	73_K	0.704	1.00
245_E	249_F	0.702	1.00
248_E	252_E	0.701	1.00
129_Q	141_Y	0.700	1.00
233_V	237_K	0.700	1.00
319_G	337_D	0.700	1.00
246_P	251_G	0.698	1.00
211_Q	214_D	0.696	1.00
273_A	276_P	0.696	1.00
306_L	379_F	0.696	1.00
69_G	72_E	0.695	1.00
170_H	197_V	0.691	1.00
289_D	292_E	0.690	1.00
43_K	48_Y	0.690	1.00
328_R	333_T	0.689	1.00
246_P	249_F	0.687	1.00
280_G	283_G	0.685	1.00
96_L	167_A	0.685	1.00
228_P	231_V	0.684	1.00
75_R	83_M	0.682	1.00
178_V	206_M	0.679	1.00
389_D	392_V	0.679	1.00
240_L	243_N	0.678	1.00
143_P	158_T	0.676	1.00
81_K	84_A	0.673	1.00
238_K	242_E	0.672	1.00
303_E	330_G	0.667	1.00
138_T	162_N	0.667	1.00
355_V	377_A	0.663	1.00
315_R	325_P	0.662	1.00
393_E	396_Q	0.661	1.00
314_F	334_F	0.660	1.00
330_G	334_F	0.660	1.00
323_Y	374_T	0.654	1.00
58_T	62_R	0.653	1.00
62_R	65_D	0.651	1.00
77_F	288_I	0.650	1.00
202_S	218_F	0.647	1.00
73_K	294_I	0.647	1.00
101_L	135_T	0.647	1.00
222_S	225_M	0.645	1.00
311_L	322_V	0.644	1.00
317_L	320_V	0.642	1.00
300_S	303_E	0.641	1.00
246_P	252_E	0.640	1.00
216_D	221_S	0.639	1.00
383_N	387_E	0.639	1.00
158_T	161_S	0.638	1.00
100_A	165_I	0.637	1.00
284_L	288_I	0.632	1.00
69_G	289_D	0.632	1.00
222_S	227_G	0.631	1.00
64_T	68_E	0.631	1.00
301_R	304_H	0.631	1.00
287_A	291_L	0.628	1.00
242_E	246_P	0.627	1.00
322_V	335_N	0.625	1.00
85_E	237_K	0.624	1.00
291_L	294_I	0.623	1.00
70_A	289_D	0.622	1.00
356_R	359_H	0.620	1.00
238_K	241_L	0.619	1.00
391_L	394_A	0.619	1.00
127_P	130_Q	0.619	1.00
86_I	233_V	0.618	1.00
199_G	202_S	0.617	1.00
101_L	130_Q	0.616	1.00
100_A	167_A	0.616	1.00
185_A	215_C	0.614	1.00
320_V	325_P	0.613	1.00
305_K	308_A	0.612	1.00
306_L	310_A	0.611	1.00
310_A	332_V	0.611	1.00
80_A	85_E	0.610	1.00
185_A	188_A	0.609	1.00
310_A	314_F	0.606	1.00
308_A	311_L	0.605	1.00
227_G	231_V	0.604	1.00
344_V	375_A	0.604	1.00
297_D	300_S	0.604	1.00
93_T	97_N	0.601	1.00
157_E	161_S	0.601	1.00
74_V	288_I	0.601	1.00
341_P	357_A	0.600	1.00
317_L	392_V	0.599	1.00
279_A	282_I	0.596	1.00
207_K	210_V	0.596	1.00
218_F	221_S	0.594	1.00
119_M	177_T	0.590	1.00
199_G	203_T	0.589	1.00
236_G	241_L	0.589	1.00
48_Y	52_V	0.589	1.00
122_H	126_I	0.589	1.00
168_V	197_V	0.587	1.00
283_G	287_A	0.586	1.00
216_D	219_A	0.585	1.00
124_N	127_P	0.585	1.00
156_R	186_K	0.584	1.00
394_A	398_T	0.583	1.00
379_F	388_I	0.583	1.00
333_T	336_L	0.581	1.00
187_I	193_A	0.579	1.00
155_V	159_V	0.578	1.00
266_E	270_K	0.577	1.00
73_K	77_F	0.577	1.00
118_Y	144_L	0.572	1.00
380_Y	383_N	0.572	1.00
74_V	88_F	0.570	1.00
121_H	173_N	0.570	1.00
181_I	195_I	0.569	1.00
310_A	313_R	0.569	1.00
329_A	335_N	0.568	1.00
92_T	96_L	0.567	1.00
145_Q	154_D	0.566	1.00
219_A	222_S	0.564	1.00
341_P	345_A	0.561	1.00
67_Y	278_I	0.559	1.00
233_V	236_G	0.559	1.00
186_K	214_D	0.559	1.00
323_Y	333_T	0.558	1.00
87_I	98_M	0.557	1.00
181_I	185_A	0.555	1.00
149_T	179_N	0.555	1.00
231_V	280_G	0.551	1.00
241_L	245_E	0.548	1.00
195_I	215_C	0.547	1.00
246_P	253_M	0.547	1.00
321_T	324_G	0.546	1.00
61_T	64_T	0.546	1.00
44_Y	48_Y	0.545	1.00
311_L	328_R	0.545	1.00
41_L	44_Y	0.545	1.00
85_E	89_T	0.545	1.00
161_S	191_N	0.544	1.00
42_D	45_Y	0.542	1.00
246_P	250_G	0.542	1.00
391_L	395_L	0.541	1.00
290_F	293_E	0.540	1.00
306_L	383_N	0.540	1.00
291_L	295_G	0.539	1.00
227_G	230_G	0.539	1.00
94_T	97_N	0.539	1.00
226_C	381_L	0.538	1.00
71_R	88_F	0.537	1.00
111_G	138_T	0.535	1.00
182_K	207_K	0.534	1.00
45_Y	279_A	0.534	1.00
203_T	225_M	0.534	1.00
224_K	376_R	0.532	1.00
160_T	190_D	0.529	1.00
170_H	208_I	0.529	1.00
354_A	357_A	0.528	1.00
142_I	155_V	0.526	1.00
152_L	180_P	0.526	1.00
55_G	60_G	0.525	1.00
332_V	336_L	0.525	1.00
330_G	335_N	0.523	1.00
339_V	344_V	0.522	1.00
80_A	218_F	0.522	1.00
70_A	281_A	0.521	1.00
218_F	222_S	0.520	1.00
294_I	298_E	0.519	1.00
267_L	271_F	0.519	1.00
268_P	271_F	0.519	1.00
130_Q	135_T	0.518	1.00
379_F	383_N	0.517	1.00
40_T	44_Y	0.516	1.00
132_V	135_T	0.515	1.00
41_L	280_G	0.514	1.00
278_I	281_A	0.513	1.00
185_A	197_V	0.511	1.00
40_T	45_Y	0.511	1.00
328_R	334_F	0.509	1.00
119_M	144_L	0.507	1.00
101_L	247_A	0.506	1.00
76_K	79_N	0.504	1.00
306_L	309_Y	0.501	1.00
355_V	358_G	0.500	1.00
189_H	193_A	0.500	1.00
218_F	235_Y	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1kmjA	2	0.9926	100	0.302	Contact Map
4w91A	2	0.9926	100	0.321	Contact Map
4lw2A	2	0.9778	100	0.328	Contact Map
4q75A	2	1	100	0.33	Contact Map
1t3iA	2	0.9828	100	0.331	Contact Map
3e9kA	2	0.9458	100	0.352	Contact Map
3caiA	2	0.9261	100	0.369	Contact Map
1eluA	2	0.9113	100	0.376	Contact Map
4isyA	2	0.8892	100	0.386	Contact Map
3a9zA	2	0.8966	100	0.386	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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