GREMLIN Database
YURT - Uncharacterized protein YurT
UniProt: O32161 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 127 (120)
Sequences: 3549 (1816)
Seq/√Len: 165.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
18_E22_E5.8321.00
90_N94_E3.8451.00
98_T115_D3.8051.00
91_R95_K2.9431.00
84_D87_K2.9291.00
93_K102_E2.4911.00
29_K43_V2.2781.00
13_Q40_I2.2651.00
66_Y72_S2.1871.00
92_L97_V2.0931.00
100_T121_L2.0011.00
11_Q15_M1.9941.00
86_Q110_T1.8581.00
23_K95_K1.8291.00
4_V81_G1.7591.00
17_L28_K1.7501.00
31_D38_R1.7111.00
115_D121_L1.6631.00
65_E68_K1.6061.00
61_P64_K1.5631.00
12_D15_M1.5401.00
34_M37_F1.5251.00
28_K31_D1.4891.00
86_Q105_K1.4771.00
26_F44_S1.4601.00
85_I103_P1.4581.00
29_K52_E1.4561.00
106_M109_V1.4551.00
82_V88_E1.4321.00
18_E23_K1.4031.00
113_V123_Q1.3931.00
11_Q118_C1.3721.00
88_E91_R1.3691.00
21_T42_L1.3461.00
5_V79_M1.3441.00
28_K40_I1.3381.00
44_S80_F1.2911.00
87_K91_R1.2821.00
90_N93_K1.2591.00
33_P38_R1.2421.00
14_D18_E1.2201.00
27_I45_P1.2111.00
5_V54_L1.1931.00
89_Y112_A1.1851.00
101_T104_T1.1561.00
86_Q90_N1.1511.00
58_N67_Q1.1481.00
92_L99_F1.1461.00
100_T115_D1.1001.00
3_I80_F1.0961.00
33_P59_E1.0871.00
23_K92_L1.0851.00
78_T122_I1.0731.00
27_I46_D1.0570.99
27_I43_V1.0550.99
18_E21_T1.0510.99
15_M118_C1.0490.99
89_Y93_K1.0410.99
37_F58_N1.0350.99
10_V13_Q1.0330.99
79_M125_V1.0230.99
112_A124_I0.9830.99
10_V16_A0.9770.99
99_F103_P0.9620.99
38_R59_E0.9610.99
53_L78_T0.9530.99
92_L124_I0.9390.99
35_G59_E0.9300.99
5_V41_T0.9220.98
17_L40_I0.9170.98
101_T112_A0.9060.98
62_A65_E0.8910.98
22_E95_K0.8910.98
99_F114_F0.8800.98
101_T111_I0.8680.98
11_Q117_T0.8610.98
16_A118_C0.8550.98
99_F112_A0.8450.97
111_I123_Q0.8430.97
86_Q103_P0.8390.97
20_Y24_L0.8350.97
60_H63_A0.8340.97
86_Q89_Y0.8320.97
11_Q64_K0.8240.97
5_V77_A0.8190.97
4_V79_M0.8180.97
105_K110_T0.8140.97
75_L78_T0.8120.97
64_K68_K0.8020.96
14_D31_D0.7920.96
41_T52_E0.7890.96
8_I20_Y0.7800.96
39_W56_E0.7800.96
16_A20_Y0.7720.95
85_I125_V0.7650.95
30_E52_E0.7370.94
56_E77_A0.7320.94
20_Y116_D0.7250.94
92_L114_F0.7220.94
10_V40_I0.7150.93
60_H73_E0.7130.93
41_T54_L0.7100.93
97_V114_F0.7090.93
88_E92_L0.7060.93
20_Y122_I0.7040.93
19_F117_T0.7030.93
10_V18_E0.7000.92
24_L114_F0.6970.92
82_V87_K0.6970.92
54_L58_N0.6940.92
15_M18_E0.6910.92
111_I125_V0.6870.92
63_A67_Q0.6840.92
85_I126_Q0.6820.91
76_P123_Q0.6740.91
56_E75_L0.6740.91
68_K72_S0.6600.90
86_Q104_T0.6490.89
24_L53_L0.6430.89
33_P36_K0.6410.89
66_Y77_A0.6400.89
42_L52_E0.6330.88
89_Y102_E0.6310.88
65_E72_S0.6280.88
9_F58_N0.6270.88
64_K67_Q0.6250.88
62_A66_Y0.6190.87
77_A123_Q0.6190.87
23_K97_V0.6150.87
85_I111_I0.6140.87
77_A113_V0.6110.86
11_Q16_A0.6090.86
76_P79_M0.6080.86
43_V52_E0.6040.86
106_M111_I0.6010.85
115_D119_G0.6010.85
22_E91_R0.5950.85
37_F106_M0.5920.85
61_P65_E0.5900.84
116_D119_G0.5880.84
81_G125_V0.5870.84
45_P48_Q0.5860.84
54_L77_A0.5810.84
68_K74_G0.5780.83
54_L79_M0.5780.83
9_F75_L0.5760.83
44_S47_D0.5720.83
7_S54_L0.5690.82
29_K41_T0.5690.82
104_T111_I0.5650.82
37_F56_E0.5610.81
9_F72_S0.5530.80
60_H64_K0.5510.80
26_F80_F0.5510.80
32_V35_G0.5500.80
56_E60_H0.5490.80
67_Q119_G0.5470.80
13_Q57_P0.5450.79
14_D38_R0.5440.79
17_L21_T0.5390.79
87_K90_N0.5380.79
21_T28_K0.5360.78
17_L42_L0.5350.78
6_T77_A0.5290.77
116_D120_N0.5280.77
23_K114_F0.5270.77
47_D51_T0.5230.77
5_V52_E0.5230.77
113_V125_V0.5210.76
85_I88_E0.5210.76
8_I75_L0.5150.76
89_Y99_F0.5150.76
31_D39_W0.5110.75
6_T41_T0.5050.74
42_L53_L0.5030.74
31_D40_I0.5020.74
63_A119_G0.5010.74
88_E124_I0.5010.74
8_I39_W0.5000.73
34_M39_W0.5000.73
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4g6xA 2 1 99.9 0.397 Contact Map
3w0tA 2 1 99.9 0.399 Contact Map
4mtsA 2 0.9606 99.9 0.412 Contact Map
1f9zA 2 0.9606 99.9 0.417 Contact Map
1ss4A 4 0.9764 99.9 0.424 Contact Map
3kolA 2 0.9685 99.8 0.442 Contact Map
3l7tA 2 0.9449 99.8 0.444 Contact Map
3hdpA 2 0.9606 99.8 0.444 Contact Map
2c21A 2 0.937 99.8 0.447 Contact Map
2p25A 2 0.9449 99.8 0.451 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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