FRLB - BACSU - GREMLIN Contacts

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FRLB - Fructosamine deglycase FrlB

UniProt:	O32157	Sequences: MSQATAKVNREVQAFLQDLKGKTIDHVFFVACGGSSAIMYPSKYVFDRESKSINSDLYSANEFIQRNPVQLGEKSLVILCSHSGNTPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQYDWGDEALAINTNYGVLYQIVFGTLQVLENNTKFEQAIEGLDQLQAVYEKALKQEADNAKQFAKAHEKESIIYTMASGANYGVAYSYSICILMEMQWIHSHAIHAGEYFHGPFEIIDESVPFIILLGLDETRPLEERALTFSKKYGKKLTVLDAASYDFTAIDDSVKGYLAPLVLNRVLRSYADELAEERNHPLSHRRYMWKVEY	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	328 (302)
Sequences:	5364 (3173)
Seq/√Len:	182.6

ECOLI - GLMS FRLB AGAS
BACSU - FRLB GLMS
HALSA - GLMS
SULSO - Q980D3 Q97YQ6 Q97W10 PGMI

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
25_D	74_K	4.636	1.00
105_A	118_A	4.070	1.00
94_A	117_E	3.745	1.00
179_A	308_E	3.155	1.00
29_F	39_M	3.150	1.00
134_N	137_Y	3.113	1.00
172_E	176_K	2.935	1.00
97_R	119_Q	2.741	1.00
80_C	145_F	2.726	1.00
228_A	258_E	2.631	1.00
171_Y	300_R	2.597	1.00
138_G	206_V	2.517	1.00
26_H	56_D	2.513	1.00
39_M	80_C	2.509	1.00
187_K	312_E	2.486	1.00
79_L	93_A	2.477	1.00
95_F	98_G	2.449	1.00
210_Y	302_L	2.434	1.00
247_I	262_L	2.266	1.00
42_S	145_F	2.210	1.00
211_S	223_S	2.208	1.00
24_I	76_L	2.199	1.00
156_K	159_Q	2.126	1.00
25_D	72_G	2.109	1.00
311_E	317_L	2.107	1.00
81_S	114_L	2.033	1.00
154_N	157_F	2.026	1.00
178_E	181_N	1.988	1.00
163_G	290_K	1.946	1.00
124_Y	140_L	1.940	1.00
36_S	40_Y	1.933	1.00
173_K	176_K	1.918	1.00
77_V	101_A	1.910	1.00
190_E	312_E	1.910	1.00
76_L	104_I	1.896	1.00
93_A	114_L	1.894	1.00
188_A	271_K	1.837	1.00
252_D	291_G	1.808	1.00
150_V	160_A	1.805	1.00
59_S	227_H	1.776	1.00
166_Q	170_V	1.764	1.00
138_G	299_N	1.739	1.00
43_K	47_D	1.724	1.00
208_Y	225_A	1.696	1.00
107_T	115_A	1.692	1.00
28_F	75_S	1.688	1.00
95_F	99_K	1.669	1.00
102_L	120_Y	1.666	1.00
85_N	113_P	1.659	1.00
26_H	54_N	1.639	1.00
91_K	94_A	1.618	1.00
115_A	121_V	1.606	1.00
45_V	146_G	1.591	1.00
46_F	55_S	1.589	1.00
216_M	224_H	1.582	1.00
27_V	76_L	1.575	1.00
248_L	302_L	1.572	1.00
170_V	297_V	1.562	1.00
110_P	123_Q	1.559	1.00
34_G	134_N	1.540	1.00
58_Y	66_R	1.538	1.00
72_G	75_S	1.526	1.00
204_Y	208_Y	1.525	1.00
163_G	170_V	1.515	1.00
43_K	56_D	1.501	1.00
180_D	183_K	1.499	1.00
308_E	312_E	1.483	1.00
162_E	165_D	1.480	1.00
166_Q	169_A	1.474	1.00
183_K	308_E	1.470	1.00
249_L	262_L	1.455	1.00
185_F	273_T	1.455	1.00
193_S	240_D	1.448	1.00
71_L	101_A	1.442	1.00
183_K	187_K	1.435	1.00
77_V	96_A	1.432	1.00
30_V	77_V	1.430	1.00
46_F	149_Q	1.428	1.00
103_T	118_A	1.418	1.00
48_R	67_N	1.407	1.00
286_D	298_L	1.405	1.00
278_A	282_F	1.405	1.00
181_N	184_Q	1.402	1.00
193_S	242_S	1.397	1.00
249_L	255_R	1.384	1.00
29_F	55_S	1.378	1.00
52_S	70_Q	1.373	1.00
278_A	288_S	1.371	1.00
28_F	63_F	1.370	1.00
79_L	103_T	1.361	1.00
174_A	297_V	1.354	1.00
46_F	152_E	1.352	1.00
87_P	91_K	1.341	1.00
169_A	172_E	1.321	1.00
27_V	78_I	1.315	1.00
151_L	154_N	1.293	1.00
26_H	72_G	1.279	1.00
167_L	296_L	1.274	1.00
30_V	63_F	1.272	1.00
263_T	266_K	1.260	1.00
280_Y	283_T	1.259	1.00
253_E	291_G	1.250	1.00
52_S	67_N	1.246	1.00
246_I	305_Y	1.245	1.00
174_A	178_E	1.242	1.00
96_A	101_A	1.232	1.00
40_Y	208_Y	1.227	1.00
111_E	115_A	1.223	1.00
189_H	305_Y	1.221	1.00
26_H	75_S	1.208	1.00
179_A	183_K	1.206	1.00
210_Y	248_L	1.184	1.00
304_S	308_E	1.178	1.00
142_Q	296_L	1.178	1.00
162_E	166_Q	1.173	1.00
206_V	299_N	1.168	1.00
209_S	213_C	1.165	1.00
49_E	292_Y	1.165	1.00
232_F	264_F	1.165	1.00
105_A	114_L	1.164	1.00
150_V	157_F	1.163	1.00
255_R	259_E	1.162	1.00
245_F	265_S	1.159	1.00
156_K	160_A	1.151	1.00
97_R	103_T	1.139	1.00
159_Q	290_K	1.128	1.00
150_V	153_N	1.124	1.00
102_L	119_Q	1.123	1.00
63_F	71_L	1.121	1.00
161_I	165_D	1.119	1.00
106_M	145_F	1.116	1.00
105_A	121_V	1.111	1.00
29_F	78_I	1.110	1.00
184_Q	187_K	1.109	1.00
250_G	298_L	1.103	1.00
203_N	294_A	1.103	1.00
18_D	102_L	1.100	1.00
23_T	74_K	1.094	1.00
40_Y	57_L	1.093	1.00
127_G	136_N	1.092	1.00
239_I	245_F	1.091	1.00
79_L	89_T	1.083	1.00
194_I	222_H	1.079	1.00
310_A	315_H	1.073	1.00
198_M	231_Y	1.073	1.00
316_P	319_H	1.068	1.00
170_V	173_K	1.058	1.00
97_R	117_E	1.053	1.00
305_Y	309_L	1.030	1.00
143_I	296_L	1.030	1.00
265_S	270_K	1.029	1.00
193_S	313_R	1.024	1.00
157_F	161_I	1.020	0.99
245_F	270_K	1.016	0.99
197_T	215_L	1.011	0.99
240_D	321_R	1.011	0.99
156_K	290_K	1.010	0.99
124_Y	141_Y	1.009	0.99
159_Q	163_G	1.004	0.99
90_V	94_A	1.000	0.99
307_D	311_E	1.000	0.99
93_A	118_A	0.995	0.99
195_I	215_L	0.989	0.99
75_S	101_A	0.979	0.99
178_E	182_A	0.978	0.99
170_V	289_V	0.977	0.99
203_N	298_L	0.968	0.99
197_T	246_I	0.963	0.99
25_D	75_S	0.960	0.99
138_G	205_G	0.960	0.99
207_A	248_L	0.954	0.99
79_L	96_A	0.950	0.99
32_C	60_A	0.946	0.99
110_P	121_V	0.944	0.99
133_I	218_M	0.944	0.99
32_C	86_T	0.942	0.99
186_A	305_Y	0.937	0.99
262_L	272_L	0.932	0.99
110_P	125_D	0.932	0.99
36_S	59_S	0.930	0.99
198_M	265_S	0.929	0.99
24_I	75_S	0.919	0.99
262_L	274_V	0.917	0.99
106_M	144_V	0.915	0.99
248_L	298_L	0.912	0.99
47_D	66_R	0.911	0.99
275_L	286_D	0.909	0.99
158_E	162_E	0.905	0.99
64_I	91_K	0.904	0.99
78_I	104_I	0.902	0.99
31_A	35_S	0.900	0.99
264_F	268_Y	0.898	0.99
251_L	255_R	0.896	0.99
220_W	321_R	0.892	0.99
111_E	116_Q	0.891	0.99
94_A	98_G	0.887	0.99
24_I	102_L	0.885	0.99
167_L	297_V	0.884	0.99
42_S	149_Q	0.881	0.99
153_N	157_F	0.881	0.99
277_A	288_S	0.873	0.98
163_G	166_Q	0.872	0.98
32_C	230_E	0.870	0.98
210_Y	299_N	0.864	0.98
195_I	221_I	0.860	0.98
122_A	144_V	0.857	0.98
275_L	301_V	0.856	0.98
278_A	283_T	0.854	0.98
279_S	283_T	0.841	0.98
125_D	128_D	0.839	0.98
196_Y	243_V	0.838	0.98
149_Q	153_N	0.835	0.98
90_V	113_P	0.829	0.98
148_L	152_E	0.826	0.98
247_I	258_E	0.825	0.98
192_E	271_K	0.824	0.98
50_S	149_Q	0.819	0.98
241_E	269_G	0.819	0.98
34_G	209_S	0.818	0.98
265_S	272_L	0.813	0.97
93_A	103_T	0.813	0.97
239_I	270_K	0.812	0.97
251_L	277_A	0.811	0.97
19_L	22_K	0.809	0.97
169_A	173_K	0.808	0.97
201_G	254_T	0.806	0.97
185_F	189_H	0.803	0.97
139_V	296_L	0.802	0.97
170_V	174_A	0.801	0.97
23_T	102_L	0.798	0.97
198_M	247_I	0.797	0.97
37_A	208_Y	0.796	0.97
122_A	148_L	0.795	0.97
189_H	195_I	0.791	0.97
221_I	309_L	0.785	0.97
203_N	248_L	0.784	0.97
231_Y	236_F	0.784	0.97
103_T	119_Q	0.783	0.97
231_Y	265_S	0.779	0.97
309_L	313_R	0.777	0.97
226_I	235_P	0.777	0.97
107_T	143_I	0.775	0.97
182_A	305_Y	0.774	0.97
35_S	107_T	0.766	0.96
276_D	282_F	0.759	0.96
160_A	293_L	0.759	0.96
30_V	79_L	0.759	0.96
43_K	57_L	0.758	0.96
194_I	243_V	0.757	0.96
213_C	237_E	0.755	0.96
78_I	148_L	0.753	0.96
249_L	258_E	0.749	0.96
289_V	293_L	0.746	0.96
276_D	279_S	0.746	0.96
281_D	284_A	0.742	0.96
279_S	282_F	0.742	0.96
82_H	108_F	0.740	0.96
209_S	303_R	0.738	0.96
45_V	149_Q	0.737	0.96
38_I	145_F	0.730	0.95
37_A	40_Y	0.728	0.95
34_G	213_C	0.727	0.95
249_L	259_E	0.726	0.95
31_A	57_L	0.724	0.95
192_E	244_P	0.717	0.95
113_P	117_E	0.715	0.95
275_L	298_L	0.714	0.95
106_M	124_Y	0.712	0.95
291_G	294_A	0.711	0.95
184_Q	188_A	0.710	0.95
139_V	303_R	0.710	0.95
29_F	57_L	0.709	0.95
67_N	95_F	0.707	0.94
49_E	149_Q	0.705	0.94
129_E	135_T	0.703	0.94
115_A	123_Q	0.702	0.94
48_R	292_Y	0.702	0.94
259_E	263_T	0.695	0.94
22_K	102_L	0.691	0.94
195_I	246_I	0.688	0.94
50_S	53_I	0.687	0.94
88_E	229_G	0.687	0.94
297_V	300_R	0.686	0.94
79_L	114_L	0.684	0.93
134_N	237_E	0.684	0.93
159_Q	162_E	0.683	0.93
36_S	57_L	0.682	0.93
67_N	99_K	0.682	0.93
278_A	281_D	0.682	0.93
82_H	129_E	0.682	0.93
126_W	140_L	0.676	0.93
163_G	293_L	0.676	0.93
41_P	206_V	0.676	0.93
290_K	293_L	0.675	0.93
52_S	55_S	0.674	0.93
182_A	301_V	0.670	0.93
255_R	279_S	0.669	0.93
28_F	77_V	0.667	0.93
232_F	236_F	0.667	0.93
221_I	313_R	0.664	0.92
146_G	160_A	0.662	0.92
111_E	121_V	0.658	0.92
141_Y	145_F	0.655	0.92
220_W	237_E	0.653	0.92
289_V	297_V	0.653	0.92
91_K	95_F	0.652	0.92
186_A	312_E	0.650	0.92
59_S	229_G	0.648	0.91
197_T	210_Y	0.646	0.91
261_A	264_F	0.644	0.91
280_Y	284_A	0.643	0.91
276_D	280_Y	0.643	0.91
29_F	46_F	0.642	0.91
171_Y	296_L	0.642	0.91
27_V	53_I	0.641	0.91
104_I	122_A	0.640	0.91
274_V	282_F	0.637	0.91
42_S	46_F	0.637	0.91
110_P	115_A	0.637	0.91
320_R	323_M	0.633	0.90
47_D	54_N	0.632	0.90
130_A	319_H	0.632	0.90
28_F	56_D	0.632	0.90
209_S	318_S	0.630	0.90
203_N	250_G	0.628	0.90
61_N	229_G	0.626	0.90
34_G	235_P	0.624	0.90
175_L	300_R	0.620	0.90
27_V	55_S	0.620	0.90
68_P	95_F	0.618	0.89
52_S	68_P	0.615	0.89
249_L	274_V	0.613	0.89
206_V	248_L	0.613	0.89
34_G	138_G	0.612	0.89
45_V	292_Y	0.612	0.89
183_K	312_E	0.611	0.89
139_V	300_R	0.611	0.89
263_T	267_K	0.610	0.89
180_D	184_Q	0.608	0.89
40_Y	205_G	0.608	0.89
108_F	134_N	0.607	0.89
61_N	200_S	0.607	0.89
54_N	70_Q	0.606	0.89
188_A	273_T	0.606	0.89
264_F	267_K	0.605	0.88
158_E	166_Q	0.604	0.88
82_H	134_N	0.604	0.88
82_H	136_N	0.604	0.88
67_N	253_E	0.602	0.88
41_P	205_G	0.601	0.88
88_E	232_F	0.600	0.88
219_Q	315_H	0.600	0.88
147_T	161_I	0.600	0.88
182_A	304_S	0.599	0.88
173_K	178_E	0.598	0.88
94_A	116_Q	0.598	0.88
129_E	136_N	0.598	0.88
115_A	118_A	0.595	0.88
255_R	276_D	0.595	0.88
79_L	118_A	0.594	0.88
279_S	288_S	0.592	0.87
166_Q	289_V	0.592	0.87
112_S	115_A	0.591	0.87
289_V	294_A	0.591	0.87
275_L	302_L	0.587	0.87
232_F	324_W	0.584	0.87
114_L	121_V	0.584	0.87
121_V	124_Y	0.582	0.86
187_K	190_E	0.579	0.86
150_V	154_N	0.578	0.86
45_V	202_A	0.576	0.86
160_A	163_G	0.575	0.86
46_F	148_L	0.574	0.86
36_S	60_A	0.572	0.86
49_E	150_V	0.571	0.85
174_A	182_A	0.569	0.85
114_L	118_A	0.568	0.85
111_E	123_Q	0.567	0.85
43_K	55_S	0.567	0.85
135_T	209_S	0.564	0.85
18_D	24_I	0.563	0.85
29_F	145_F	0.561	0.84
30_V	92_A	0.559	0.84
30_V	96_A	0.557	0.84
157_F	160_A	0.557	0.84
268_Y	324_W	0.550	0.83
232_F	268_Y	0.543	0.82
205_G	235_P	0.543	0.82
294_A	298_L	0.543	0.82
109_K	124_Y	0.542	0.82
147_T	151_L	0.540	0.82
139_V	171_Y	0.540	0.82
147_T	150_V	0.539	0.82
143_I	167_L	0.538	0.82
131_L	137_Y	0.538	0.82
236_F	264_F	0.537	0.82
131_L	235_P	0.535	0.82
94_A	113_P	0.535	0.82
86_T	220_W	0.535	0.82
257_L	260_R	0.534	0.81
175_L	304_S	0.534	0.81
40_Y	43_K	0.534	0.81
27_V	46_F	0.534	0.81
88_E	134_N	0.533	0.81
48_R	156_K	0.532	0.81
108_F	136_N	0.532	0.81
297_V	301_V	0.531	0.81
135_T	303_R	0.530	0.81
49_E	153_N	0.529	0.81
304_S	307_D	0.529	0.81
190_E	309_L	0.529	0.81
160_A	290_K	0.528	0.81
167_L	293_L	0.526	0.80
100_G	111_E	0.526	0.80
18_D	22_K	0.525	0.80
259_E	266_K	0.525	0.80
37_A	209_S	0.524	0.80
236_F	268_Y	0.523	0.80
88_E	213_C	0.523	0.80
266_K	272_L	0.522	0.80
310_A	317_L	0.519	0.80
107_T	112_S	0.519	0.80
252_D	288_S	0.519	0.80
209_S	212_I	0.519	0.80
82_H	127_G	0.518	0.79
251_L	278_A	0.518	0.79
142_Q	146_G	0.518	0.79
24_I	74_K	0.516	0.79
32_C	62_E	0.516	0.79
34_G	96_A	0.516	0.79
132_A	136_N	0.515	0.79
215_L	221_I	0.515	0.79
197_T	228_A	0.514	0.79
222_H	238_I	0.514	0.79
181_N	185_F	0.514	0.79
309_L	312_E	0.514	0.79
38_I	142_Q	0.513	0.79
59_S	230_E	0.512	0.79
189_H	246_I	0.511	0.79
126_W	136_N	0.510	0.78
140_L	143_I	0.510	0.78
138_G	141_Y	0.509	0.78
18_D	120_Y	0.507	0.78
318_S	323_M	0.506	0.78
64_I	95_F	0.506	0.78
49_E	156_K	0.506	0.78
63_F	96_A	0.506	0.78
211_S	225_A	0.505	0.78
210_Y	306_A	0.505	0.78
166_Q	288_S	0.503	0.77
34_G	212_I	0.503	0.77
186_A	308_E	0.502	0.77
141_Y	236_F	0.500	0.77

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3euaA	2	0.9939	100	0.216	Contact Map
3fj1A	2	0.9512	100	0.22	Contact Map
2zj3A	2	0.9817	100	0.222	Contact Map
1moqA	2	0.9817	100	0.225	Contact Map
2a3nA	2	0.9787	100	0.227	Contact Map
2pocA	4	0.9512	100	0.227	Contact Map
3fkjA	2	0.9939	100	0.228	Contact Map
2amlA	2	0.9878	100	0.233	Contact Map
3hbaA	2	0.8994	100	0.234	Contact Map
3tbfA	2	0.9573	100	0.237	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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