YURO - BACSU - GREMLIN Contacts

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YURO - Uncharacterized ABC transporter extracellular-binding protein YurO

UniProt:	O32156	Sequences: MKKMLLFLIIAAVSMLTIAGCSSQSSSADGKVTLKFFHRWPKEPEKSYFEEVVKEFEKDHPDIDIQIEAVLNDSYKDKIKVMLGTTSPPDIYFSWSDEFAFKFIRGNKALDLSSYYKNDTDWSSQLVQSQITPFTYENKQYGVPWQMDAKSFFYNKDIFQKLNLDPPKTWDELIDVSKKLKEHGYTPISFGTKATWTISHYIGTLNQRMVDEKTREKDYNAKTGEFTDEGYVKALEKLQELMPYFNKHVNSVDHEYVRQQFKSGKSAMIYAETAEIKLVEPVNLGMFPFPEISGQKGSSEALTGAPEGFMISSRTKHPKEAMEFLQFLTSKRMGEKLVKDVGKYSAVQGTATEENATAIQREAVQHIVDAKSMVPWFDMDVDVEVADAYLTGVQQMLGGDMTPQQVMKAVQKAAKQVRASAE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	422 (392)
Sequences:	30160 (24164)
Seq/√Len:	1220.5

ECOLI - YCJN UGPB MALE YDCS POTF YNJB POTD THIB
BACSU - YURO YESO ARAN MSME CYCB YTCQ MDXE LIPO
HALSA - Q9HHQ8 Q9HP00 Q9HR87 Q9HMT5 Q9HNZ3 Q9HR04
SULSO - Q97ZC3 Q97YY1 Q97UZ1 Q97VC2 Q97UF5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
33_T	66_Q	3.782	1.00
402_T	405_Q	3.551	1.00
110_L	318_P	3.371	1.00
232_V	404_Q	3.207	1.00
157_D	283_N	3.205	1.00
239_Q	243_P	3.151	1.00
156_K	285_G	2.879	1.00
33_T	64_D	2.873	1.00
111_D	139_K	2.862	1.00
236_E	240_E	2.806	1.00
35_K	66_Q	2.801	1.00
174_I	240_E	2.534	1.00
50_E	54_K	2.483	1.00
156_K	160_Q	2.461	1.00
63_I	320_E	2.428	1.00
404_Q	408_K	2.401	1.00
169_T	172_E	2.363	1.00
154_Y	285_G	2.351	1.00
55_E	58_K	2.339	1.00
56_F	323_E	2.266	1.00
74_S	77_D	2.236	1.00
408_K	412_K	2.225	1.00
323_E	326_Q	2.207	1.00
57_E	64_D	2.178	1.00
135_T	140_Q	2.137	1.00
159_F	268_M	2.134	1.00
175_D	179_K	2.130	1.00
229_E	233_K	2.122	1.00
128_Q	132_T	2.101	1.00
330_S	333_M	2.095	1.00
31_K	64_D	2.072	1.00
227_T	408_K	2.071	1.00
411_Q	415_K	2.068	1.00
113_S	139_K	2.063	1.00
178_K	182_E	2.042	1.00
317_H	320_E	2.026	1.00
401_M	409_A	2.017	1.00
35_K	68_E	2.013	1.00
164_L	176_V	1.995	1.00
51_E	54_K	1.993	1.00
253_D	256_Y	1.975	1.00
37_F	82_M	1.956	1.00
125_Q	349_G	1.939	1.00
55_E	327_F	1.929	1.00
54_K	58_K	1.920	1.00
395_Q	400_D	1.912	1.00
157_D	161_K	1.899	1.00
236_E	403_P	1.880	1.00
172_E	175_D	1.875	1.00
233_K	236_E	1.824	1.00
90_D	317_H	1.822	1.00
13_V	16_L	1.817	1.00
175_D	178_K	1.785	1.00
132_T	135_T	1.755	1.00
319_K	323_E	1.747	1.00
109_A	310_M	1.735	1.00
57_E	61_P	1.726	1.00
179_K	183_H	1.725	1.00
32_V	320_E	1.716	1.00
395_Q	401_M	1.715	1.00
14_S	17_T	1.712	1.00
115_Y	322_M	1.709	1.00
365_Q	369_D	1.702	1.00
55_E	59_D	1.669	1.00
405_Q	409_A	1.661	1.00
335_E	339_K	1.647	1.00
396_M	406_V	1.628	1.00
53_V	57_E	1.626	1.00
232_V	403_P	1.626	1.00
236_E	404_Q	1.623	1.00
171_D	174_I	1.588	1.00
54_K	57_E	1.581	1.00
55_E	336_K	1.580	1.00
92_Y	312_S	1.571	1.00
216_E	221_A	1.566	1.00
53_V	324_F	1.558	1.00
142_G	308_G	1.556	1.00
361_R	365_Q	1.554	1.00
409_A	413_A	1.554	1.00
134_F	308_G	1.531	1.00
32_V	317_H	1.526	1.00
387_D	391_T	1.523	1.00
174_I	241_L	1.508	1.00
152_F	287_F	1.506	1.00
154_Y	287_F	1.494	1.00
232_V	236_E	1.486	1.00
83_L	88_P	1.476	1.00
111_D	114_S	1.470	1.00
156_K	283_N	1.470	1.00
388_A	413_A	1.466	1.00
408_K	411_Q	1.459	1.00
405_Q	408_K	1.457	1.00
158_I	267_A	1.457	1.00
46_K	50_E	1.453	1.00
216_E	223_T	1.442	1.00
31_K	62_D	1.439	1.00
315_T	318_P	1.437	1.00
409_A	412_K	1.426	1.00
174_I	178_K	1.403	1.00
331_K	335_E	1.403	1.00
158_I	180_L	1.402	1.00
56_F	327_F	1.402	1.00
171_D	175_D	1.399	1.00
239_Q	396_M	1.397	1.00
56_F	63_I	1.395	1.00
180_L	267_A	1.394	1.00
110_L	313_S	1.394	1.00
260_Q	265_K	1.384	1.00
51_E	55_E	1.380	1.00
230_G	233_K	1.359	1.00
311_I	325_L	1.358	1.00
237_K	240_E	1.357	1.00
237_K	241_L	1.349	1.00
78_K	82_M	1.342	1.00
56_F	324_F	1.341	1.00
392_G	401_M	1.341	1.00
261_F	284_L	1.333	1.00
333_M	336_K	1.330	1.00
396_M	403_P	1.326	1.00
189_S	266_S	1.324	1.00
38_H	67_I	1.316	1.00
392_G	409_A	1.307	1.00
162_L	180_L	1.307	1.00
104_I	141_Y	1.299	1.00
167_P	172_E	1.288	1.00
177_S	268_M	1.287	1.00
227_T	411_Q	1.284	1.00
178_K	244_Y	1.277	1.00
53_V	67_I	1.269	1.00
151_S	286_M	1.262	1.00
63_I	323_E	1.255	1.00
315_T	321_A	1.244	1.00
91_I	325_L	1.243	1.00
217_K	221_A	1.231	1.00
152_F	268_M	1.223	1.00
362_E	365_Q	1.219	1.00
327_F	333_M	1.215	1.00
412_K	415_K	1.204	1.00
320_E	323_E	1.202	1.00
94_S	310_M	1.200	1.00
174_I	237_K	1.198	1.00
401_M	406_V	1.193	1.00
168_K	172_E	1.190	1.00
164_L	179_K	1.190	1.00
134_F	140_Q	1.186	1.00
11_A	15_M	1.182	1.00
21_C	25_S	1.178	1.00
171_D	293_S	1.178	1.00
47_S	50_E	1.177	1.00
392_G	395_Q	1.175	1.00
90_D	315_T	1.174	1.00
10_I	16_L	1.167	1.00
336_K	340_D	1.166	1.00
155_N	282_V	1.164	1.00
71_L	74_S	1.154	1.00
21_C	24_Q	1.145	1.00
240_E	243_P	1.135	1.00
32_V	62_D	1.132	1.00
392_G	410_V	1.131	1.00
121_D	124_S	1.129	1.00
312_S	315_T	1.126	1.00
110_L	315_T	1.125	1.00
159_F	164_L	1.122	1.00
324_F	328_L	1.122	1.00
322_M	326_Q	1.111	1.00
259_Q	263_S	1.111	1.00
91_I	321_A	1.108	1.00
391_T	413_A	1.108	1.00
395_Q	409_A	1.107	1.00
14_S	18_I	1.106	1.00
155_N	158_I	1.102	1.00
176_V	179_K	1.094	1.00
107_N	313_S	1.089	1.00
349_G	352_T	1.089	1.00
347_V	350_T	1.087	1.00
157_D	282_V	1.086	1.00
216_E	222_K	1.080	1.00
173_L	177_S	1.079	1.00
10_I	13_V	1.077	1.00
10_I	14_S	1.065	1.00
324_F	327_F	1.064	1.00
311_I	322_M	1.063	1.00
160_Q	166_P	1.063	1.00
158_I	162_L	1.062	1.00
47_S	51_E	1.061	1.00
365_Q	368_V	1.060	1.00
34_L	324_F	1.058	1.00
358_A	361_R	1.058	1.00
114_S	117_K	1.053	1.00
131_I	135_T	1.051	1.00
9_I	13_V	1.050	1.00
401_M	405_Q	1.044	1.00
104_I	136_Y	1.041	1.00
6_L	13_V	1.041	1.00
233_K	237_K	1.041	1.00
79_I	92_Y	1.040	1.00
311_I	321_A	1.039	1.00
185_Y	265_K	1.035	1.00
232_V	407_M	1.033	1.00
159_F	176_V	1.030	1.00
206_N	212_E	1.029	1.00
160_Q	165_D	1.027	1.00
15_M	18_I	1.025	1.00
56_F	320_E	1.024	1.00
318_P	322_M	1.019	1.00
117_K	123_S	1.018	1.00
158_I	161_K	1.017	1.00
88_P	312_S	1.014	1.00
177_S	244_Y	1.013	1.00
239_Q	403_P	1.012	1.00
336_K	339_K	1.011	1.00
256_Y	259_Q	1.005	1.00
313_S	318_P	1.003	1.00
17_T	20_G	1.000	1.00
181_K	187_P	0.997	1.00
65_I	324_F	0.997	1.00
209_M	233_K	0.996	1.00
385_V	414_A	0.995	1.00
91_I	324_F	0.991	1.00
36_F	309_F	0.991	1.00
236_E	239_Q	0.990	1.00
213_K	217_K	0.988	1.00
83_L	108_K	0.983	1.00
173_L	268_M	0.981	1.00
37_F	89_P	0.980	1.00
388_A	391_T	0.978	1.00
53_V	65_I	0.972	1.00
57_E	62_D	0.967	1.00
229_E	232_V	0.965	1.00
12_A	15_M	0.955	1.00
164_L	180_L	0.954	1.00
354_E	357_T	0.954	1.00
176_V	268_M	0.949	1.00
179_K	182_E	0.949	1.00
162_L	183_H	0.947	1.00
260_Q	266_S	0.945	1.00
224_G	415_K	0.943	1.00
235_L	396_M	0.941	1.00
331_K	349_G	0.939	1.00
291_E	294_G	0.935	1.00
86_T	314_R	0.934	1.00
52_V	55_E	0.931	1.00
358_A	362_E	0.930	1.00
271_A	275_E	0.927	1.00
123_S	131_I	0.927	1.00
92_Y	310_M	0.925	1.00
128_Q	348_Q	0.924	1.00
11_A	17_T	0.922	1.00
9_I	16_L	0.921	1.00
142_G	310_M	0.920	1.00
9_I	15_M	0.917	1.00
158_I	185_Y	0.916	1.00
181_K	244_Y	0.916	1.00
364_V	368_V	0.914	1.00
384_E	387_D	0.908	1.00
406_V	410_V	0.905	1.00
125_Q	347_V	0.903	1.00
131_I	140_Q	0.903	1.00
78_K	81_V	0.899	1.00
51_E	336_K	0.899	1.00
122_W	125_Q	0.897	1.00
59_D	330_S	0.897	1.00
332_R	335_E	0.896	1.00
278_L	281_P	0.896	1.00
21_C	26_S	0.891	1.00
392_G	413_A	0.888	1.00
388_A	410_V	0.887	1.00
81_V	85_T	0.886	1.00
37_F	70_V	0.884	1.00
113_S	117_K	0.878	1.00
157_D	160_Q	0.876	1.00
48_Y	51_E	0.871	1.00
13_V	17_T	0.870	1.00
407_M	411_Q	0.869	1.00
391_T	395_Q	0.868	1.00
402_T	406_V	0.867	1.00
226_F	231_Y	0.864	1.00
51_E	340_D	0.864	1.00
11_A	14_S	0.863	1.00
32_V	63_I	0.853	1.00
388_A	392_G	0.853	1.00
128_Q	131_I	0.851	1.00
335_E	353_E	0.851	1.00
34_L	320_E	0.851	1.00
153_F	271_A	0.850	1.00
154_Y	166_P	0.848	1.00
110_L	312_S	0.843	1.00
104_I	109_A	0.839	1.00
6_L	9_I	0.838	1.00
332_R	336_K	0.838	1.00
31_K	61_P	0.837	1.00
55_E	332_R	0.836	1.00
362_E	366_H	0.830	1.00
363_A	366_H	0.830	1.00
36_F	91_I	0.829	1.00
76_K	99_F	0.827	1.00
115_Y	319_K	0.823	1.00
162_L	179_K	0.821	1.00
127_V	348_Q	0.820	1.00
321_A	325_L	0.820	1.00
166_P	172_E	0.818	1.00
145_W	309_F	0.818	1.00
392_G	406_V	0.815	1.00
126_L	329_T	0.810	1.00
177_S	181_K	0.808	1.00
109_A	141_Y	0.807	1.00
116_Y	140_Q	0.807	1.00
113_S	140_Q	0.806	1.00
224_G	411_Q	0.804	1.00
174_I	244_Y	0.798	1.00
7_F	14_S	0.795	1.00
387_D	390_L	0.791	1.00
206_N	231_Y	0.789	1.00
335_E	350_T	0.787	1.00
160_Q	283_N	0.784	1.00
361_R	364_V	0.783	1.00
12_A	16_L	0.780	1.00
92_Y	109_A	0.779	1.00
165_D	168_K	0.779	1.00
57_E	65_I	0.779	1.00
319_K	322_M	0.778	1.00
70_V	78_K	0.777	1.00
177_S	187_P	0.776	1.00
10_I	17_T	0.774	1.00
311_I	315_T	0.772	1.00
6_L	16_L	0.772	1.00
18_I	21_C	0.771	1.00
121_D	326_Q	0.770	1.00
113_S	135_T	0.765	1.00
159_F	180_L	0.765	1.00
55_E	333_M	0.763	1.00
166_P	287_F	0.763	1.00
110_L	311_I	0.763	1.00
62_D	323_E	0.762	1.00
82_M	87_S	0.762	1.00
235_L	406_V	0.761	1.00
9_I	12_A	0.759	1.00
235_L	407_M	0.758	1.00
6_L	17_T	0.753	1.00
407_M	410_V	0.750	1.00
34_L	317_H	0.748	1.00
111_D	141_Y	0.742	1.00
135_T	138_N	0.741	1.00
186_T	247_K	0.741	1.00
162_L	267_A	0.740	1.00
59_D	332_R	0.738	1.00
174_I	177_S	0.737	1.00
366_H	369_D	0.734	1.00
77_D	81_V	0.734	1.00
391_T	394_Q	0.734	1.00
166_P	176_V	0.731	1.00
12_A	17_T	0.729	1.00
110_L	115_Y	0.727	1.00
389_Y	410_V	0.727	1.00
114_S	322_M	0.726	1.00
110_L	114_S	0.726	1.00
259_Q	262_K	0.723	1.00
7_F	10_I	0.723	1.00
59_D	327_F	0.722	1.00
26_S	30_G	0.720	1.00
228_D	231_Y	0.719	1.00
363_A	367_I	0.712	1.00
162_L	176_V	0.711	1.00
209_M	237_K	0.710	1.00
225_E	228_D	0.709	1.00
353_E	356_A	0.708	1.00
176_V	180_L	0.707	1.00
213_K	216_E	0.705	1.00
114_S	139_K	0.704	1.00
181_K	186_T	0.704	1.00
228_D	232_V	0.702	1.00
170_W	237_K	0.695	1.00
255_E	258_R	0.694	1.00
202_I	206_N	0.692	1.00
8_L	15_M	0.691	1.00
52_V	327_F	0.691	1.00
83_L	312_S	0.688	1.00
204_T	207_Q	0.687	1.00
91_I	309_F	0.684	1.00
350_T	353_E	0.683	1.00
165_D	176_V	0.682	1.00
6_L	10_I	0.682	1.00
31_K	63_I	0.681	1.00
155_N	283_N	0.680	1.00
7_F	13_V	0.678	1.00
123_S	135_T	0.678	1.00
34_L	321_A	0.678	1.00
43_E	47_S	0.676	1.00
277_K	281_P	0.675	1.00
52_V	333_M	0.674	1.00
161_K	185_Y	0.672	1.00
207_Q	374_V	0.666	1.00
103_F	109_A	0.665	1.00
100_A	142_G	0.665	1.00
154_Y	159_F	0.665	1.00
126_L	131_I	0.664	1.00
101_F	105_R	0.662	1.00
59_D	62_D	0.662	1.00
121_D	125_Q	0.662	1.00
7_F	11_A	0.660	1.00
178_K	181_K	0.660	1.00
37_F	68_E	0.659	1.00
383_V	387_D	0.658	1.00
406_V	409_A	0.656	1.00
110_L	322_M	0.654	1.00
180_L	268_M	0.653	1.00
20_G	23_S	0.653	1.00
318_P	321_A	0.651	1.00
104_I	107_N	0.650	1.00
59_D	323_E	0.649	1.00
16_L	19_A	0.647	1.00
212_E	231_Y	0.647	1.00
403_P	407_M	0.644	1.00
241_L	244_Y	0.644	1.00
17_T	21_C	0.644	1.00
129_S	132_T	0.644	1.00
239_Q	242_M	0.643	1.00
216_E	225_E	0.643	1.00
396_M	401_M	0.642	1.00
125_Q	331_K	0.642	1.00
153_F	286_M	0.639	1.00
260_Q	263_S	0.638	1.00
7_F	17_T	0.637	1.00
233_K	292_I	0.637	1.00
386_A	390_L	0.636	1.00
56_F	61_P	0.635	1.00
164_L	167_P	0.635	1.00
170_W	174_I	0.634	1.00
238_L	242_M	0.633	1.00
173_L	188_I	0.630	1.00
57_E	63_I	0.630	1.00
188_I	191_G	0.629	1.00
88_P	314_R	0.628	1.00
75_Y	79_I	0.627	1.00
226_F	414_A	0.627	1.00
257_V	269_I	0.626	1.00
115_Y	318_P	0.624	1.00
168_K	291_E	0.620	1.00
161_K	183_H	0.619	1.00
52_V	328_L	0.619	1.00
255_E	259_Q	0.619	1.00
331_K	347_V	0.617	1.00
348_Q	352_T	0.616	1.00
20_G	24_Q	0.615	1.00
187_P	191_G	0.615	1.00
223_T	415_K	0.613	1.00
95_W	98_E	0.613	1.00
309_F	325_L	0.610	1.00
110_L	314_R	0.609	1.00
114_S	118_N	0.607	1.00
11_A	16_L	0.607	1.00
94_S	103_F	0.607	1.00
186_T	189_S	0.607	1.00
43_E	46_K	0.606	1.00
404_Q	407_M	0.604	1.00
244_Y	248_H	0.603	1.00
36_F	67_I	0.602	1.00
159_F	166_P	0.599	1.00
217_K	223_T	0.598	1.00
360_Q	363_A	0.595	1.00
127_V	351_A	0.594	1.00
19_A	23_S	0.592	1.00
8_L	12_A	0.592	1.00
74_S	78_K	0.592	1.00
177_S	241_L	0.591	1.00
118_N	319_K	0.588	1.00
68_E	82_M	0.588	1.00
351_A	354_E	0.588	1.00
34_L	315_T	0.588	1.00
100_A	104_I	0.586	1.00
100_A	109_A	0.586	1.00
394_Q	398_G	0.586	1.00
19_A	22_S	0.585	1.00
403_P	406_V	0.585	1.00
107_N	110_L	0.584	1.00
102_K	106_G	0.583	1.00
342_G	346_A	0.582	1.00
8_L	14_S	0.581	1.00
261_F	282_V	0.580	1.00
280_E	284_L	0.580	1.00
162_L	185_Y	0.580	1.00
376_W	382_D	0.579	1.00
35_K	82_M	0.579	1.00
377_F	382_D	0.578	1.00
366_H	370_A	0.578	1.00
252_V	260_Q	0.578	1.00
206_N	234_A	0.578	1.00
155_N	264_G	0.577	1.00
8_L	11_A	0.577	1.00
52_V	336_K	0.571	1.00
5_L	12_A	0.571	1.00
156_K	282_V	0.571	1.00
153_F	276_I	0.571	1.00
187_P	192_T	0.570	1.00
360_Q	364_V	0.570	1.00
122_W	326_Q	0.570	1.00
113_S	322_M	0.568	1.00
167_P	268_M	0.566	1.00
76_K	102_K	0.566	1.00
152_F	270_Y	0.564	1.00
205_L	209_M	0.564	1.00
32_V	61_P	0.563	1.00
5_L	8_L	0.562	1.00
80_K	102_K	0.562	1.00
131_I	144_P	0.561	1.00
285_G	362_E	0.560	1.00
21_C	30_G	0.560	1.00
322_M	325_L	0.559	1.00
36_F	53_V	0.558	1.00
82_M	89_P	0.556	1.00
56_F	65_I	0.556	1.00
115_Y	118_N	0.555	1.00
112_L	325_L	0.555	1.00
246_N	260_Q	0.555	1.00
392_G	396_M	0.553	1.00
276_I	280_E	0.553	1.00
228_D	411_Q	0.551	1.00
180_L	183_H	0.551	1.00
239_Q	402_T	0.550	1.00
180_L	185_Y	0.550	1.00
64_D	67_I	0.549	1.00
15_M	19_A	0.548	1.00
34_L	90_D	0.547	1.00
184_G	188_I	0.547	1.00
178_K	240_E	0.547	1.00
5_L	16_L	0.545	1.00
134_F	142_G	0.545	1.00
68_E	78_K	0.544	1.00
77_D	80_K	0.543	1.00
35_K	89_P	0.543	1.00
127_V	130_Q	0.539	1.00
189_S	192_T	0.537	1.00
187_P	190_F	0.537	1.00
148_D	307_E	0.537	1.00
22_S	25_S	0.537	1.00
234_A	238_L	0.536	1.00
117_K	121_D	0.536	1.00
160_Q	163_N	0.536	1.00
157_D	264_G	0.535	1.00
326_Q	330_S	0.532	1.00
309_F	328_L	0.532	1.00
227_T	407_M	0.530	1.00
35_K	90_D	0.530	1.00
99_F	102_K	0.529	1.00
68_E	89_P	0.528	1.00
118_N	322_M	0.527	1.00
76_K	103_F	0.527	1.00
342_G	345_S	0.527	1.00
9_I	14_S	0.527	1.00
50_E	67_I	0.526	1.00
231_Y	411_Q	0.523	1.00
159_F	267_A	0.522	1.00
203_G	207_Q	0.522	1.00
18_I	23_S	0.520	1.00
172_E	176_V	0.520	1.00
188_I	192_T	0.519	1.00
382_D	386_A	0.519	1.00
6_L	14_S	0.519	1.00
258_R	271_A	0.518	1.00
8_L	13_V	0.516	1.00
112_L	322_M	0.516	1.00
165_D	172_E	0.516	1.00
359_I	362_E	0.515	1.00
49_F	52_V	0.515	1.00
230_G	234_A	0.515	1.00
153_F	284_L	0.515	1.00
34_L	91_I	0.515	1.00
125_Q	348_Q	0.514	1.00
291_E	300_E	0.514	1.00
213_K	374_V	0.513	1.00
32_V	323_E	0.513	1.00
39_R	75_Y	0.513	1.00
353_E	357_T	0.513	1.00
108_K	111_D	0.512	1.00
61_P	320_E	0.512	1.00
44_P	47_S	0.510	1.00
257_V	266_S	0.509	1.00
36_F	93_F	0.508	1.00
232_V	408_K	0.507	1.00
159_F	165_D	0.507	1.00
143_V	325_L	0.506	1.00
205_L	234_A	0.506	1.00
148_D	306_P	0.505	1.00
90_D	316_K	0.503	1.00
381_V	384_E	0.503	1.00
275_E	279_V	0.502	1.00
363_A	368_V	0.500	1.00
36_F	324_F	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4r2fA	1	0.8934	100	0.157	Contact Map
3uorA	1	0.8839	100	0.16	Contact Map
4r9fA	1	0.8768	100	0.163	Contact Map
3vxbA	1	0.8934	100	0.164	Contact Map
4r6kA	1	0.9005	100	0.171	Contact Map
4mfiA	1	0.8886	100	0.184	Contact Map
4g68A	1	0.8981	100	0.192	Contact Map
4c1uA	1	0.8981	100	0.194	Contact Map
4r6hA	1	0.8957	100	0.208	Contact Map
4ovjA	1	0.8886	100	0.212	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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