YURJ - BACSU - GREMLIN Contacts

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YURJ - Uncharacterized ABC transporter ATP-binding protein YurJ

UniProt:	O32151	Sequences: MASLTFEHVKKSYHSQLTVKDFDLDVKDKELLVLVGPSGCGKSTTLRMVAGLESISEGNLLIDGERVNDLPPKERDIAMVFQNYALYPHMTVFDNMAFGLKLRKMAKQEIAERVHAAARILEIEHLLKRKPKALSGGQRQRVALGRSIVREPKVFLMDEPLSNLDAKLRVTMRTEISKLHQRLEATIIYVTHDQTEAMTMGDRIVVMNEGEIQQVAKPHDIYHYPANLFVAGFIGSPGMNFLKGIIEQQHGELFFTNSSIRLHIPEEKAKRLKEKGYAGEQMIAGVRPEHITQMTGNDQLFDSVFQANVEVNENLGSELIVHVMAGDERLKVRLDGNTRIDAGDSIQLSVKMDHVVFFDAETEEAVY	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	367 (312)
Sequences:	20258 (14722)
Seq/√Len:	833.5

ECOLI - MALK YCJV UGPC CYSA POTG FBPC POTA PROV YDCT METN MODC SAPD DPPD YEHX RBSA DPPF YADG OPPD ARAG DDPD YHES OPPF MACB UUP GSIA DDPF YECC TAUB MLAF FEPC HISP LPTB CYDC NIKE YTFR SAPF MDLB SSUB LSRA MDLA FHUC FECE MSBA GLNQ PHNC ETTA YOJI YHDZ CYDD GLTL YPHE SUFC LIVG ZNUC ARTP PSTB PHNK THIQ MODF ALSA FTSE LIVF XYLG BTUD LOLD NIKD MGLA CCMA YBBA FETA YEJF PHNL YDDA YNJD YBHF YBIT
BACSU - YURJ MSMX OPUCA OPUBA YVRA OPUAA METN TAGH OPPD YFIL YXLF YKFD DPPD YHCH APPF YDBJ YFMM YHAQ APPD YKPA YCBN YVFR YDIF RBSA YTRB OPPF ECFA1 FHUC YFMR YFMF ECSA SKFE YUSV TCYN BCEA YTLC SUNT YVCR YHEH YFIC YCLP YFIB MNTB YLMA YXDL YKNV ALBC YGAD SUFC YKNU NATA ECFA2 BMRA YXEO GLNQ TCYC CYDD YHEI YWJA FTSE ARTM SSUB YKOD PSTB1 CYDC YTHP YVRO YCLH ZNUC PSTB2 YJKB YKNY EXPZ YYBJ YHCG YUFO YYDI YTRE
HALSA - Q9HHQ5 Q9HR06 Q9HNZ9 Q9HMT3 Q9HMX3 BTUDA Q9HMW0 Q9HMX2 Q9HMU8 Q9HRJ6 PHNC Q9HMG1 Q9HRH8 PSTB2 Q9HHM2 Q9HSQ7 Q9HMG6 Q9HNY3 Q9HRV7 Q9HRZ9 Y2317 Y1631 PSTB1 Q9HHR7 Q9HR96 Q9HT03 Q9HS04 Q9HQA8 Q9HR21 Q9HMC1 Q9HMW1
SULSO - Q97YY4 Q97UF2 Q97UY8 Q97ZC0 Q97VC1 Q7LX64 Q97UH3 Q97VF5 Q97VH6 Q97VK8 Q97VK9 Q97UD4 Q97YP3 Q97YK2 Q97X18 Q97YP7 Q97VF4 Q97YQ7 Q97Z03 Q97YP8 Q97UJ9 Q980W0 Q97U54 Y1893 Y2030 Q97V01 Q97UH4 PSTB Q97W42 Q97V00 Q7LY07 Q7LXM4 Q97VY4 Q97VM2 Q97Z56 Q7LX80 Q97UG5 Q97Z96 Q97UC2 Q97YP4 Q97ZU0 Q980K5 Q980E6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
216_A	220_D	4.293	1.00
33_V	201_G	3.871	1.00
59_N	66_R	3.829	1.00
8_H	21_D	3.747	1.00
30_E	203_R	3.653	1.00
5_T	25_D	3.584	1.00
7_E	59_N	3.449	1.00
119_R	124_E	3.403	1.00
17_L	20_K	3.360	1.00
111_A	115_H	2.978	1.00
32_L	205_V	2.678	1.00
106_A	109_E	2.647	1.00
217_K	220_D	2.643	1.00
20_K	211_E	2.594	1.00
213_Q	227_N	2.585	1.00
10_K	57_E	2.547	1.00
93_F	97_A	2.523	1.00
6_F	9_V	2.475	1.00
10_K	17_L	2.468	1.00
126_L	129_R	2.452	1.00
7_E	61_L	2.435	1.00
5_T	61_L	2.406	1.00
27_K	30_E	2.391	1.00
12_S	17_L	2.363	1.00
93_F	128_K	2.300	1.00
113_R	151_E	2.296	1.00
11_K	48_M	2.260	1.00
8_H	23_D	2.225	1.00
93_F	115_H	2.218	1.00
10_K	21_D	2.173	1.00
76_D	153_K	2.165	1.00
93_F	111_A	2.124	1.00
122_E	171_T	2.112	1.00
198_M	219_H	2.058	1.00
4_L	154_V	2.055	1.00
9_V	55_I	1.981	1.00
228_L	283_I	1.981	1.00
118_A	127_L	1.958	1.00
63_D	153_K	1.953	1.00
11_K	56_S	1.952	1.00
61_L	66_R	1.945	1.00
48_M	55_I	1.875	1.00
205_V	215_V	1.875	1.00
19_V	48_M	1.863	1.00
46_L	190_V	1.831	1.00
49_V	188_I	1.794	1.00
208_N	213_Q	1.777	1.00
112_E	116_A	1.752	1.00
108_Q	112_E	1.750	1.00
109_E	112_E	1.747	1.00
205_V	212_I	1.735	1.00
113_R	116_A	1.723	1.00
11_K	53_E	1.718	1.00
93_F	114_V	1.584	1.00
47_R	53_E	1.567	1.00
12_S	56_S	1.563	1.00
62_I	67_V	1.546	1.00
97_A	114_V	1.542	1.00
109_E	113_R	1.525	1.00
228_L	241_F	1.523	1.00
66_R	69_D	1.514	1.00
67_V	70_L	1.504	1.00
157_M	187_I	1.504	1.00
121_L	145_G	1.499	1.00
115_H	119_R	1.498	1.00
90_M	98_F	1.481	1.00
46_L	156_L	1.473	1.00
26_V	32_L	1.461	1.00
219_H	223_H	1.459	1.00
6_F	24_L	1.451	1.00
117_A	149_V	1.437	1.00
251_G	255_F	1.437	1.00
105_M	109_E	1.432	1.00
116_A	119_R	1.431	1.00
32_L	215_V	1.419	1.00
48_M	60_L	1.407	1.00
241_F	283_I	1.406	1.00
65_E	70_L	1.403	1.00
6_F	49_V	1.397	1.00
232_G	241_F	1.394	1.00
65_E	153_K	1.385	1.00
245_I	281_Q	1.374	1.00
22_F	45_T	1.372	1.00
89_H	132_K	1.363	1.00
277_Y	280_E	1.361	1.00
55_I	60_L	1.330	1.00
105_M	110_I	1.317	1.00
10_K	20_K	1.317	1.00
47_R	52_L	1.316	1.00
91_T	94_D	1.315	1.00
59_N	68_N	1.284	1.00
24_L	205_V	1.279	1.00
228_L	232_G	1.258	1.00
253_L	256_T	1.245	1.00
91_T	130_K	1.244	1.00
97_A	110_I	1.235	1.00
6_F	45_T	1.227	1.00
257_N	260_I	1.209	1.00
301_F	304_V	1.195	1.00
180_H	185_A	1.185	1.00
180_H	187_I	1.184	1.00
32_L	203_R	1.184	1.00
19_V	22_F	1.183	1.00
7_E	23_D	1.183	1.00
94_D	101_K	1.173	1.00
220_D	224_Y	1.170	1.00
177_S	200_M	1.161	1.00
107_K	111_A	1.158	1.00
110_I	114_V	1.157	1.00
115_H	127_L	1.156	1.00
87_Y	90_M	1.154	1.00
70_L	74_E	1.146	1.00
116_A	120_I	1.144	1.00
252_E	255_F	1.143	1.00
94_D	97_A	1.136	1.00
12_S	18_T	1.134	1.00
101_K	107_K	1.114	1.00
92_V	134_L	1.110	1.00
251_G	254_F	1.104	1.00
78_A	147_S	1.095	1.00
19_V	45_T	1.090	1.00
276_G	280_E	1.089	1.00
258_S	261_R	1.088	1.00
116_A	151_E	1.087	1.00
243_K	283_I	1.086	1.00
294_M	297_N	1.082	1.00
248_Q	251_G	1.079	1.00
28_D	63_D	1.076	1.00
262_L	265_P	1.072	1.00
50_A	156_L	1.072	1.00
212_I	215_V	1.071	1.00
265_P	269_A	1.063	1.00
97_A	101_K	1.061	1.00
55_I	68_N	1.057	1.00
12_S	57_E	1.051	1.00
33_V	197_A	1.048	1.00
27_K	203_R	1.044	1.00
243_K	281_Q	1.043	1.00
252_E	256_T	1.041	1.00
251_G	256_T	1.038	1.00
203_R	215_V	1.037	1.00
107_K	110_I	1.033	1.00
45_T	207_M	1.027	1.00
9_V	48_M	1.023	1.00
237_P	285_G	1.019	1.00
177_S	181_Q	1.017	1.00
314_N	319_L	1.004	1.00
99_G	150_R	1.002	1.00
206_V	221_I	1.001	1.00
60_L	67_V	0.999	1.00
256_T	259_S	0.998	1.00
95_N	146_R	0.997	1.00
129_R	133_A	0.994	1.00
12_S	15_S	0.990	1.00
130_K	133_A	0.986	1.00
61_L	64_G	0.983	1.00
264_I	268_K	0.971	1.00
78_A	152_P	0.969	1.00
255_F	258_S	0.966	1.00
117_A	148_I	0.964	1.00
115_H	124_E	0.962	1.00
265_P	268_K	0.956	1.00
244_G	282_M	0.952	1.00
177_S	199_T	0.946	1.00
208_N	229_F	0.945	1.00
26_V	186_T	0.945	1.00
8_H	57_E	0.941	1.00
86_L	131_P	0.941	1.00
269_A	273_K	0.940	1.00
286_V	291_I	0.937	1.00
276_G	279_G	0.934	1.00
71_P	74_E	0.931	1.00
30_E	202_D	0.926	1.00
40_C	207_M	0.925	1.00
24_L	215_V	0.924	1.00
13_Y	18_T	0.920	1.00
289_E	293_Q	0.911	1.00
263_H	266_E	0.907	1.00
31_L	200_M	0.906	1.00
35_V	206_V	0.905	1.00
191_T	197_A	0.900	1.00
6_F	60_L	0.899	1.00
289_E	292_T	0.899	1.00
254_F	257_N	0.895	1.00
93_F	127_L	0.891	1.00
117_A	120_I	0.889	1.00
98_F	102_L	0.888	1.00
255_F	259_S	0.888	1.00
87_Y	99_G	0.887	1.00
96_M	149_V	0.887	1.00
261_R	265_P	0.886	1.00
96_M	145_G	0.883	1.00
103_R	150_R	0.881	1.00
31_L	180_H	0.881	1.00
206_V	230_V	0.878	1.00
309_V	312_N	0.872	1.00
266_E	269_A	0.868	1.00
293_Q	296_G	0.867	1.00
5_T	64_G	0.867	1.00
267_E	271_R	0.866	1.00
276_G	282_M	0.863	1.00
189_Y	201_G	0.862	1.00
161_L	189_Y	0.858	1.00
96_M	118_A	0.854	1.00
261_R	264_I	0.844	1.00
259_S	262_L	0.838	1.00
161_L	176_I	0.837	1.00
151_E	185_A	0.837	1.00
34_L	205_V	0.833	1.00
90_M	94_D	0.832	1.00
29_K	186_T	0.832	1.00
222_Y	225_P	0.830	1.00
48_M	56_S	0.830	1.00
273_K	276_G	0.829	1.00
240_N	243_K	0.825	1.00
29_K	184_E	0.823	1.00
254_F	258_S	0.822	1.00
256_T	260_I	0.821	1.00
125_H	129_R	0.818	1.00
105_M	113_R	0.815	1.00
240_N	244_G	0.809	1.00
223_H	314_N	0.808	1.00
179_L	185_A	0.806	1.00
286_V	289_E	0.806	1.00
31_L	187_I	0.804	1.00
303_S	306_Q	0.798	1.00
169_R	193_D	0.798	1.00
95_N	131_P	0.798	1.00
257_N	261_R	0.798	1.00
78_A	150_R	0.796	1.00
170_V	174_T	0.795	1.00
301_F	309_V	0.794	1.00
152_P	155_F	0.790	1.00
302_D	308_N	0.789	1.00
155_F	185_A	0.786	1.00
28_D	153_K	0.785	1.00
48_M	53_E	0.783	1.00
122_E	125_H	0.782	1.00
311_V	314_N	0.779	1.00
178_K	311_V	0.779	1.00
219_H	314_N	0.779	1.00
34_L	45_T	0.776	1.00
271_R	275_K	0.772	1.00
37_P	40_C	0.772	1.00
258_S	262_L	0.770	1.00
111_A	114_V	0.768	1.00
174_T	311_V	0.767	1.00
11_K	44_T	0.767	1.00
43_S	47_R	0.764	1.00
292_T	295_T	0.764	1.00
32_L	188_I	0.759	1.00
197_A	201_G	0.759	1.00
248_Q	255_F	0.758	1.00
144_L	157_M	0.754	1.00
175_E	178_K	0.748	1.00
9_V	60_L	0.747	1.00
176_I	187_I	0.746	1.00
261_R	266_E	0.745	1.00
96_M	99_G	0.744	1.00
21_D	57_E	0.743	1.00
256_T	261_R	0.743	1.00
262_L	266_E	0.743	1.00
247_E	256_T	0.740	1.00
301_F	308_N	0.740	1.00
77_I	154_V	0.740	1.00
131_P	142_V	0.739	1.00
208_N	211_E	0.737	1.00
99_G	146_R	0.737	1.00
7_E	25_D	0.735	1.00
166_A	170_V	0.735	1.00
195_T	199_T	0.729	1.00
288_P	292_T	0.728	1.00
84_Y	163_N	0.726	1.00
203_R	214_Q	0.726	1.00
222_Y	289_E	0.722	1.00
315_L	320_I	0.721	1.00
190_V	194_Q	0.721	1.00
271_R	274_E	0.715	1.00
124_E	127_L	0.715	1.00
113_R	117_A	0.710	1.00
260_I	264_I	0.709	1.00
153_K	185_A	0.708	1.00
275_K	279_G	0.706	1.00
253_L	257_N	0.699	1.00
195_T	315_L	0.697	1.00
157_M	189_Y	0.696	1.00
62_I	77_I	0.694	1.00
272_L	276_G	0.691	1.00
159_E	192_H	0.690	1.00
66_R	75_R	0.689	1.00
290_H	293_Q	0.688	1.00
40_C	45_T	0.685	1.00
90_M	95_N	0.684	1.00
259_S	264_I	0.683	1.00
101_K	110_I	0.682	1.00
249_Q	254_F	0.682	1.00
80_V	147_S	0.681	1.00
308_N	311_V	0.680	1.00
304_V	308_N	0.680	1.00
190_V	193_D	0.678	1.00
206_V	225_P	0.677	1.00
207_M	212_I	0.677	1.00
250_H	253_L	0.676	1.00
260_I	265_P	0.676	1.00
247_E	250_H	0.675	1.00
288_P	291_I	0.670	1.00
282_M	286_V	0.669	1.00
279_G	283_I	0.669	1.00
118_A	123_I	0.669	1.00
50_A	79_M	0.669	1.00
167_K	232_G	0.666	1.00
303_S	307_A	0.664	1.00
218_P	222_Y	0.664	1.00
253_L	258_S	0.658	1.00
307_A	310_E	0.656	1.00
14_H	17_L	0.656	1.00
255_F	260_I	0.655	1.00
92_V	142_V	0.654	1.00
287_R	291_I	0.653	1.00
118_A	121_L	0.652	1.00
286_V	292_T	0.651	1.00
269_A	276_G	0.647	1.00
117_A	121_L	0.646	1.00
13_Y	53_E	0.645	1.00
220_D	223_H	0.645	1.00
106_A	110_I	0.644	1.00
284_A	287_R	0.642	1.00
291_I	294_M	0.640	1.00
91_T	128_K	0.638	1.00
260_I	263_H	0.637	1.00
114_V	117_A	0.636	1.00
229_F	232_G	0.636	1.00
166_A	173_R	0.633	1.00
283_I	287_R	0.632	1.00
155_F	187_I	0.630	1.00
268_K	271_R	0.629	1.00
287_R	290_H	0.626	1.00
315_L	318_E	0.624	1.00
254_F	259_S	0.623	1.00
279_G	282_M	0.623	1.00
249_Q	252_E	0.622	1.00
108_Q	111_A	0.621	1.00
276_G	290_H	0.620	1.00
246_I	249_Q	0.619	1.00
123_I	126_L	0.619	1.00
281_Q	285_G	0.617	1.00
304_V	307_A	0.615	1.00
174_T	178_K	0.615	1.00
264_I	267_E	0.612	1.00
262_L	268_K	0.612	1.00
170_V	195_T	0.612	1.00
162_S	166_A	0.611	1.00
86_L	95_N	0.611	1.00
117_A	145_G	0.609	1.00
293_Q	297_N	0.609	1.00
223_H	226_A	0.608	1.00
302_D	306_Q	0.608	1.00
76_D	150_R	0.608	1.00
275_K	278_A	0.602	1.00
110_I	113_R	0.601	1.00
219_H	319_L	0.598	1.00
306_Q	309_V	0.598	1.00
88_P	132_K	0.597	1.00
93_F	96_M	0.594	1.00
87_Y	95_N	0.594	1.00
141_R	164_L	0.592	1.00
172_M	175_E	0.589	1.00
34_L	207_M	0.589	1.00
263_H	269_A	0.587	1.00
268_K	272_L	0.585	1.00
82_Q	163_N	0.585	1.00
154_V	186_T	0.584	1.00
112_E	115_H	0.582	1.00
239_M	242_L	0.582	1.00
312_N	316_G	0.582	1.00
270_K	273_K	0.582	1.00
12_S	20_K	0.581	1.00
317_S	320_I	0.581	1.00
244_G	284_A	0.580	1.00
247_E	252_E	0.580	1.00
221_I	225_P	0.579	1.00
11_K	19_V	0.579	1.00
223_H	227_N	0.578	1.00
177_S	314_N	0.575	1.00
274_E	278_A	0.574	1.00
93_F	110_I	0.573	1.00
229_F	233_F	0.573	1.00
257_N	262_L	0.571	1.00
230_V	233_F	0.569	1.00
78_A	187_I	0.569	1.00
156_L	188_I	0.568	1.00
125_H	138_Q	0.566	1.00
171_T	175_E	0.566	1.00
49_V	156_L	0.565	1.00
82_Q	136_G	0.565	1.00
274_E	277_Y	0.560	1.00
270_K	274_E	0.560	1.00
216_A	221_I	0.554	1.00
173_R	199_T	0.549	1.00
254_F	261_R	0.547	1.00
83_N	139_R	0.547	1.00
24_L	212_I	0.547	1.00
249_Q	253_L	0.545	1.00
249_Q	255_F	0.543	1.00
307_A	311_V	0.543	1.00
280_E	283_I	0.540	1.00
240_N	245_I	0.540	1.00
54_S	69_D	0.539	1.00
34_L	188_I	0.538	1.00
118_A	124_E	0.538	1.00
292_T	296_G	0.537	1.00
273_K	277_Y	0.537	1.00
308_N	312_N	0.536	1.00
22_F	212_I	0.536	1.00
179_L	187_I	0.534	1.00
262_L	267_E	0.534	1.00
80_V	140_Q	0.533	1.00
237_P	241_F	0.532	1.00
302_D	312_N	0.531	1.00
177_S	202_D	0.531	1.00
178_K	310_E	0.531	1.00
98_F	101_K	0.531	1.00
76_D	103_R	0.530	1.00
250_H	256_T	0.530	1.00
163_N	173_R	0.528	1.00
30_E	215_V	0.528	1.00
91_T	95_N	0.527	1.00
230_V	234_I	0.527	1.00
242_L	246_I	0.527	1.00
245_I	249_Q	0.526	1.00
269_A	275_K	0.525	1.00
31_L	189_Y	0.525	1.00
170_V	236_S	0.524	1.00
231_A	235_G	0.524	1.00
285_G	288_P	0.524	1.00
267_E	270_K	0.523	1.00
20_K	209_E	0.523	1.00
272_L	279_G	0.522	1.00
144_L	200_M	0.522	1.00
38_S	192_H	0.522	1.00
222_Y	226_A	0.522	1.00
204_I	218_P	0.521	1.00
248_Q	252_E	0.519	1.00
291_I	297_N	0.519	1.00
125_H	209_E	0.518	1.00
292_T	297_N	0.518	1.00
169_R	196_E	0.515	1.00
17_L	21_D	0.514	1.00
275_K	283_I	0.513	1.00
252_E	261_R	0.512	1.00
247_E	251_G	0.512	1.00
100_L	149_V	0.511	1.00
97_A	111_A	0.510	1.00
312_N	319_L	0.510	1.00
264_I	269_A	0.509	1.00
68_N	72_P	0.509	1.00
26_V	188_I	0.508	1.00
238_G	241_F	0.508	1.00
301_F	305_F	0.507	1.00
269_A	272_L	0.506	1.00
301_F	316_G	0.506	1.00
246_I	250_H	0.506	1.00
285_G	289_E	0.506	1.00
224_Y	227_N	0.504	1.00
278_A	282_M	0.504	1.00
6_F	22_F	0.502	1.00
250_H	257_N	0.501	1.00
294_M	303_S	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1v43A	2	0.951	100	0.187	Contact Map
1g291	4	0.9891	100	0.191	Contact Map
2it1A	1	0.9755	100	0.192	Contact Map
2yyzA	1	0.97	100	0.197	Contact Map
3rlfA	2	0.9809	100	0.208	Contact Map
1oxxK	1	0.9319	100	0.208	Contact Map
3fvqA	2	0.9401	100	0.227	Contact Map
4tquS	2	0.9837	100	0.234	Contact Map
3d31A	2	0.9346	100	0.235	Contact Map
1z47A	2	0.9264	100	0.236	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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