PUCK - BACSU - GREMLIN Contacts

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PUCK - Uric acid permease PucK

UniProt:	O32140	Sequences: MKEQHNALQLMMLGLQHMLAMYAGAILVPLIVGAAIGLNAGQLTYLIAIDLFMCGAATLLQLWRNRYFGIGLPVVLGCTFTAVGPMISIGSTYGVPAIYGAIIAAGLIVVLAAGFFGKLVRFFPPVVTGSVVMIIGISLIPTAMNNLAGGEGSKEFGSLDNVLLGFGVTAFILLLFYFFKGFIRSIAILLGLIAGTAAAYFMGKVDFSEVLEASWLHVPSLFYFGPPTFELPAVVTMLLVAIVSLVESTGVYFALADITNRRLSEKDLEKGYRAEGLAILLGGLFNAFPYTAFSQNVGIVQLSKMKSVNVIAITGIILVAIGLVPKAAALTTVIPTPVLGGAMIVMFGMVISYGIKMLSSVDLDSQGNLLIIASSVSLGLGATTVPALFSSLSGAASVLAGSGIVIGSLTAIALHAFFQTKQPNSADIKT	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	430 (392)
Sequences:	4325 (2243)
Seq/√Len:	113.3

ECOLI - UACT XANQ XANP YBBY URAA RUTG
BACSU - PUCK PBUX PUCJ YWDJ PYRP

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
167_G	198_A	4.954	1.00
171_F	194_A	4.902	1.00
103_I	283_G	4.850	1.00
147_L	165_G	3.897	1.00
134_I	407_G	3.886	1.00
215_W	326_K	3.777	1.00
172_I	191_G	3.622	1.00
52_F	322_G	3.544	1.00
108_I	238_L	3.529	1.00
197_A	201_F	3.427	1.00
208_S	212_E	3.401	1.00
96_P	228_T	3.118	1.00
378_L	410_T	2.995	1.00
175_L	190_L	2.943	1.00
100_G	229_F	2.928	1.00
97_A	228_T	2.878	1.00
207_F	210_V	2.729	1.00
164_L	199_A	2.721	1.00
375_S	411_A	2.601	1.00
55_G	319_V	2.599	1.00
164_L	204_K	2.563	1.00
367_G	419_Q	2.464	1.00
167_G	194_A	2.442	1.00
222_F	284_L	2.442	1.00
213_A	326_K	2.382	1.00
94_G	97_A	2.376	1.00
14_G	313_I	2.342	1.00
18_M	317_I	2.333	1.00
57_A	278_A	2.312	1.00
103_I	280_L	2.308	1.00
164_L	202_M	2.283	1.00
252_Y	271_G	2.275	1.00
104_A	234_V	2.262	1.00
169_T	345_V	2.206	1.00
193_I	197_A	2.201	1.00
71_G	265_E	2.189	1.00
196_T	205_V	2.167	1.00
11_M	317_I	2.149	1.00
10_L	313_I	2.091	1.00
197_A	200_Y	2.061	1.00
122_F	416_A	2.061	1.00
59_L	315_G	2.034	1.00
59_L	312_A	2.030	1.00
53_M	285_F	2.026	1.00
171_F	198_A	2.013	1.00
210_V	330_L	2.012	1.00
110_V	280_L	2.006	1.00
110_V	273_R	1.987	1.00
305_M	310_V	1.981	1.00
107_L	111_L	1.968	1.00
171_F	175_L	1.964	1.00
163_L	167_G	1.932	1.00
62_L	312_A	1.926	1.00
211_L	214_S	1.919	1.00
167_G	171_F	1.913	1.00
32_V	86_M	1.900	1.00
413_A	417_F	1.878	1.00
107_L	280_L	1.868	1.00
106_G	280_L	1.860	1.00
160_D	204_K	1.856	1.00
112_A	245_L	1.811	1.00
86_M	98_I	1.809	1.00
198_A	202_M	1.795	1.00
159_L	163_L	1.794	1.00
256_A	263_L	1.755	1.00
209_E	333_V	1.738	1.00
213_A	329_A	1.737	1.00
196_T	333_V	1.733	1.00
146_N	336_T	1.704	1.00
259_T	262_R	1.692	1.00
208_S	211_L	1.672	1.00
137_I	351_I	1.666	1.00
124_P	415_H	1.663	1.00
52_F	319_V	1.663	1.00
113_A	273_R	1.657	1.00
175_L	179_F	1.623	1.00
102_I	283_G	1.607	1.00
264_S	267_D	1.597	1.00
316_I	320_A	1.586	1.00
182_F	186_I	1.585	1.00
18_M	314_T	1.569	1.00
375_S	410_T	1.567	1.00
163_L	166_F	1.562	1.00
174_L	178_F	1.551	1.00
210_V	213_A	1.542	1.00
110_V	277_L	1.537	1.00
110_V	276_G	1.536	1.00
54_C	75_V	1.513	1.00
267_D	270_K	1.506	1.00
172_I	342_A	1.501	1.00
97_A	230_E	1.463	1.00
230_E	233_A	1.438	1.00
371_I	414_L	1.434	1.00
64_R	71_G	1.422	1.00
166_F	170_A	1.410	1.00
4_Q	309_N	1.404	1.00
195_G	338_V	1.385	1.00
378_L	406_I	1.377	1.00
179_F	183_I	1.367	1.00
89_I	233_A	1.367	1.00
183_I	190_L	1.361	1.00
198_A	201_F	1.360	1.00
200_Y	207_F	1.359	1.00
261_R	267_D	1.347	1.00
93_Y	230_E	1.346	1.00
221_L	284_L	1.334	1.00
59_L	62_L	1.324	1.00
221_L	286_N	1.320	1.00
17_H	296_N	1.320	1.00
169_T	374_S	1.318	1.00
83_V	87_I	1.317	1.00
126_V	372_I	1.317	1.00
160_D	202_M	1.314	1.00
223_Y	286_N	1.307	1.00
209_E	212_E	1.304	1.00
170_A	174_L	1.294	0.99
59_L	319_V	1.294	0.99
103_I	227_P	1.290	0.99
409_L	413_A	1.286	0.99
58_T	75_V	1.284	0.99
300_V	306_K	1.283	0.99
201_F	204_K	1.282	0.99
111_L	115_F	1.275	0.99
63_W	312_A	1.274	0.99
148_A	156_F	1.273	0.99
257_D	360_S	1.269	0.99
56_A	319_V	1.269	0.99
8_L	12_M	1.261	0.99
179_F	184_R	1.255	0.99
361_V	368_N	1.246	0.99
397_S	401_G	1.245	0.99
363_L	372_I	1.241	0.99
222_F	225_G	1.237	0.99
229_F	234_V	1.235	0.99
21_M	25_A	1.229	0.99
255_L	300_V	1.221	0.99
93_Y	233_A	1.220	0.99
251_V	294_S	1.212	0.99
106_G	279_I	1.212	0.99
194_A	198_A	1.210	0.99
374_S	410_T	1.205	0.99
62_L	311_I	1.194	0.99
74_V	255_L	1.194	0.99
326_K	329_A	1.186	0.99
52_F	285_F	1.180	0.99
186_I	190_L	1.158	0.99
106_G	276_G	1.158	0.99
90_G	93_Y	1.154	0.99
66_R	270_K	1.149	0.99
134_I	379_G	1.135	0.99
126_V	130_S	1.122	0.98
324_V	328_A	1.119	0.98
103_I	284_L	1.115	0.98
190_L	194_A	1.112	0.98
163_L	202_M	1.110	0.98
81_T	244_S	1.110	0.98
79_T	244_S	1.101	0.98
91_S	94_G	1.099	0.98
174_L	417_F	1.097	0.98
109_V	244_S	1.092	0.98
77_G	293_F	1.091	0.98
144_M	381_G	1.087	0.98
35_A	220_S	1.077	0.98
200_Y	205_V	1.074	0.98
217_H	325_P	1.060	0.98
155_E	158_S	1.055	0.98
66_R	71_G	1.051	0.98
376_V	380_L	1.043	0.98
7_A	11_M	1.042	0.98
100_G	104_A	1.039	0.98
251_V	297_V	1.037	0.97
247_E	291_T	1.036	0.97
96_P	225_G	1.033	0.97
396_A	399_L	1.030	0.97
5_H	307_S	1.028	0.97
105_A	241_A	1.028	0.97
133_M	376_V	1.026	0.97
248_S	252_Y	1.020	0.97
64_R	277_L	1.019	0.97
160_D	163_L	1.018	0.97
89_I	237_M	1.017	0.97
231_L	234_V	1.014	0.97
85_P	240_V	1.011	0.97
149_G	157_G	1.011	0.97
167_G	202_M	0.999	0.97
100_G	227_P	0.998	0.97
161_N	337_P	0.989	0.97
76_L	292_A	0.989	0.97
149_G	156_F	0.985	0.97
5_H	10_L	0.983	0.97
320_A	324_V	0.981	0.96
222_F	227_P	0.980	0.96
20_A	299_I	0.979	0.96
396_A	400_A	0.976	0.96
56_A	281_L	0.970	0.96
11_M	15_L	0.968	0.96
252_Y	275_E	0.968	0.96
370_L	374_S	0.964	0.96
163_L	198_A	0.958	0.96
386_P	400_A	0.956	0.96
160_D	164_L	0.954	0.96
282_G	290_Y	0.952	0.96
5_H	310_V	0.952	0.96
15_L	317_I	0.948	0.96
56_A	60_L	0.944	0.96
4_Q	10_L	0.941	0.96
309_N	312_A	0.936	0.95
199_A	204_K	0.935	0.95
248_S	271_G	0.934	0.95
59_L	316_I	0.929	0.95
93_Y	97_A	0.927	0.95
281_L	285_F	0.926	0.95
75_V	314_T	0.924	0.95
28_V	80_F	0.918	0.95
199_A	203_G	0.917	0.95
74_V	292_A	0.914	0.95
206_D	209_E	0.902	0.94
164_L	198_A	0.898	0.94
89_I	101_A	0.888	0.94
218_V	323_L	0.884	0.94
61_Q	72_L	0.878	0.94
11_M	313_I	0.877	0.94
215_W	324_V	0.871	0.93
101_A	233_A	0.868	0.93
140_I	377_S	0.867	0.93
17_H	21_M	0.865	0.93
24_G	295_Q	0.865	0.93
17_H	20_A	0.865	0.93
232_P	236_T	0.860	0.93
133_M	355_I	0.854	0.93
214_S	217_H	0.854	0.93
352_S	369_L	0.851	0.92
153_S	158_S	0.847	0.92
196_T	207_F	0.846	0.92
158_S	161_N	0.845	0.92
79_T	291_T	0.838	0.92
103_I	229_F	0.838	0.92
145_N	156_F	0.837	0.92
196_T	334_I	0.837	0.92
153_S	161_N	0.836	0.92
24_G	347_F	0.835	0.92
327_A	330_L	0.832	0.92
171_F	191_G	0.832	0.92
6_N	9_Q	0.831	0.92
207_F	333_V	0.827	0.91
132_V	251_V	0.822	0.91
364_D	368_N	0.822	0.91
220_S	223_Y	0.821	0.91
312_A	315_G	0.819	0.91
351_I	376_V	0.816	0.91
123_F	408_S	0.815	0.91
55_G	315_G	0.814	0.91
109_V	276_G	0.810	0.90
242_I	246_V	0.810	0.90
259_T	306_K	0.810	0.90
189_L	193_I	0.807	0.90
262_R	266_K	0.803	0.90
74_V	252_Y	0.800	0.90
146_N	347_F	0.796	0.90
30_L	339_L	0.795	0.90
28_V	78_C	0.792	0.89
117_G	269_E	0.791	0.89
30_L	33_G	0.790	0.89
53_M	281_L	0.789	0.89
113_A	269_E	0.788	0.89
13_L	17_H	0.787	0.89
53_M	287_A	0.787	0.89
81_T	346_M	0.786	0.89
62_L	308_V	0.779	0.89
138_S	404_I	0.779	0.89
177_Y	352_S	0.778	0.89
373_A	377_S	0.777	0.89
345_V	370_L	0.776	0.89
97_A	233_A	0.774	0.88
169_T	173_L	0.771	0.88
74_V	299_I	0.770	0.88
371_I	375_S	0.770	0.88
60_L	64_R	0.770	0.88
249_T	268_L	0.769	0.88
191_G	194_A	0.768	0.88
248_S	275_E	0.766	0.88
312_A	316_I	0.761	0.88
161_N	204_K	0.761	0.88
75_V	311_I	0.760	0.87
367_G	371_I	0.757	0.87
148_A	157_G	0.756	0.87
166_F	202_M	0.755	0.87
175_L	183_I	0.755	0.87
161_N	164_L	0.753	0.87
110_V	114_G	0.753	0.87
145_N	153_S	0.749	0.87
352_S	372_I	0.749	0.87
297_V	300_V	0.746	0.87
321_I	327_A	0.746	0.87
348_G	352_S	0.746	0.87
122_F	412_I	0.745	0.86
277_L	281_L	0.744	0.86
18_M	321_I	0.744	0.86
244_S	291_T	0.744	0.86
84_G	87_I	0.740	0.86
93_Y	228_T	0.740	0.86
101_A	105_A	0.734	0.86
103_I	107_L	0.733	0.86
116_F	272_Y	0.731	0.85
303_S	317_I	0.729	0.85
231_L	235_V	0.729	0.85
23_A	29_P	0.728	0.85
97_A	101_A	0.726	0.85
53_M	282_G	0.726	0.85
242_I	254_A	0.725	0.85
199_A	202_M	0.724	0.85
197_A	320_A	0.724	0.85
210_V	326_K	0.724	0.85
210_V	333_V	0.722	0.85
109_V	241_A	0.721	0.85
363_L	368_N	0.720	0.85
378_L	382_A	0.720	0.85
215_W	219_P	0.720	0.85
170_A	173_L	0.714	0.84
104_A	229_F	0.713	0.84
50_D	78_C	0.713	0.84
153_S	156_F	0.712	0.84
146_N	339_L	0.711	0.84
379_G	407_G	0.710	0.84
175_L	191_G	0.710	0.84
96_P	99_Y	0.710	0.84
118_K	122_F	0.710	0.84
192_L	342_A	0.705	0.83
83_V	242_I	0.705	0.83
130_S	375_S	0.705	0.83
48_A	328_A	0.704	0.83
279_I	290_Y	0.704	0.83
73_P	311_I	0.701	0.83
78_C	82_A	0.701	0.83
60_L	274_A	0.700	0.83
50_D	288_F	0.700	0.83
79_T	82_A	0.699	0.83
107_L	110_V	0.699	0.83
205_V	333_V	0.696	0.82
14_G	314_T	0.696	0.82
11_M	211_L	0.693	0.82
176_F	370_L	0.693	0.82
21_M	296_N	0.692	0.82
25_A	54_C	0.692	0.82
374_S	414_L	0.688	0.82
52_F	323_L	0.688	0.82
248_S	291_T	0.687	0.82
266_K	270_K	0.686	0.82
76_L	248_S	0.685	0.81
183_I	187_A	0.685	0.81
156_F	385_V	0.685	0.81
197_A	211_L	0.682	0.81
49_I	53_M	0.682	0.81
164_L	337_P	0.681	0.81
382_A	406_I	0.680	0.81
176_F	302_L	0.680	0.81
255_L	292_A	0.676	0.81
32_V	192_L	0.676	0.81
95_V	99_Y	0.676	0.81
317_I	321_I	0.673	0.80
88_S	92_T	0.672	0.80
147_L	344_I	0.672	0.80
218_V	221_L	0.670	0.80
237_M	337_P	0.668	0.80
170_A	193_I	0.666	0.80
88_S	91_S	0.665	0.80
50_D	54_C	0.664	0.79
117_G	121_R	0.663	0.79
194_A	197_A	0.663	0.79
190_L	193_I	0.659	0.79
84_G	88_S	0.658	0.79
258_I	301_Q	0.657	0.79
185_S	419_Q	0.656	0.79
174_L	179_F	0.656	0.79
109_V	245_L	0.655	0.79
316_I	360_S	0.655	0.79
54_C	74_V	0.653	0.78
126_V	368_N	0.652	0.78
210_V	329_A	0.652	0.78
25_A	50_D	0.650	0.78
149_G	162_V	0.650	0.78
36_I	90_G	0.649	0.78
131_V	169_T	0.649	0.78
145_N	148_A	0.649	0.78
362_D	368_N	0.648	0.78
27_L	30_L	0.648	0.78
148_A	162_V	0.648	0.78
72_L	271_G	0.647	0.78
27_L	31_I	0.644	0.77
27_L	146_N	0.644	0.77
162_V	166_F	0.643	0.77
280_L	284_L	0.642	0.77
193_I	330_L	0.640	0.77
171_F	174_L	0.639	0.77
207_F	330_L	0.639	0.77
7_A	317_I	0.638	0.77
86_M	102_I	0.636	0.76
294_S	353_Y	0.632	0.76
180_K	184_R	0.632	0.76
403_G	407_G	0.632	0.76
238_L	241_A	0.631	0.76
21_M	75_V	0.631	0.76
49_I	52_F	0.630	0.76
86_M	237_M	0.630	0.76
123_F	181_G	0.630	0.76
18_M	236_T	0.627	0.75
192_L	246_V	0.627	0.75
118_K	123_F	0.627	0.75
90_G	98_I	0.626	0.75
255_L	297_V	0.626	0.75
371_I	419_Q	0.625	0.75
301_Q	356_K	0.624	0.75
73_P	101_A	0.623	0.75
247_E	275_E	0.621	0.75
99_Y	103_I	0.621	0.75
143_A	168_V	0.621	0.75
356_K	363_L	0.619	0.75
59_L	63_W	0.618	0.74
153_S	157_G	0.616	0.74
126_V	371_I	0.615	0.74
218_V	322_G	0.613	0.74
363_L	369_L	0.612	0.74
58_T	315_G	0.612	0.74
358_L	361_V	0.610	0.73
132_V	135_I	0.609	0.73
174_L	413_A	0.609	0.73
128_T	325_P	0.609	0.73
379_G	403_G	0.608	0.73
377_S	380_L	0.608	0.73
244_S	247_E	0.607	0.73
57_A	274_A	0.607	0.73
25_A	28_V	0.605	0.73
4_Q	7_A	0.603	0.73
226_P	284_L	0.602	0.72
17_H	299_I	0.601	0.72
213_A	325_P	0.600	0.72
90_G	95_V	0.600	0.72
73_P	259_T	0.599	0.72
202_M	327_A	0.599	0.72
14_G	132_V	0.596	0.72
329_A	332_T	0.594	0.71
81_T	135_I	0.591	0.71
179_F	378_L	0.589	0.71
133_M	358_L	0.589	0.71
260_N	306_K	0.588	0.71
241_A	279_I	0.587	0.71
78_C	291_T	0.587	0.71
329_A	333_V	0.587	0.71
124_P	298_G	0.587	0.71
103_I	226_P	0.586	0.70
188_I	299_I	0.585	0.70
251_V	292_A	0.585	0.70
348_G	369_L	0.585	0.70
320_A	399_L	0.583	0.70
216_L	324_V	0.581	0.70
118_K	265_E	0.581	0.70
279_I	282_G	0.581	0.70
179_F	182_F	0.580	0.70
192_L	339_L	0.577	0.69
142_T	146_N	0.575	0.69
322_G	328_A	0.574	0.69
200_Y	203_G	0.573	0.69
372_I	376_V	0.573	0.69
130_S	411_A	0.572	0.69
26_I	331_T	0.572	0.69
254_A	353_Y	0.571	0.69
146_N	343_M	0.568	0.68
249_T	253_F	0.568	0.68
94_G	228_T	0.568	0.68
263_L	267_D	0.568	0.68
138_S	402_S	0.567	0.68
251_V	353_Y	0.565	0.68
15_L	148_A	0.564	0.68
275_E	291_T	0.562	0.67
138_S	403_G	0.561	0.67
252_Y	263_L	0.561	0.67
158_S	163_L	0.560	0.67
140_I	373_A	0.560	0.67
200_Y	417_F	0.559	0.67
60_L	110_V	0.559	0.67
79_T	282_G	0.559	0.67
140_I	380_L	0.558	0.67
165_G	338_V	0.558	0.67
55_G	59_L	0.557	0.67
161_N	165_G	0.557	0.67
195_G	203_G	0.557	0.67
129_G	354_G	0.557	0.67
127_V	415_H	0.555	0.66
177_Y	413_A	0.555	0.66
87_I	218_V	0.555	0.66
148_A	153_S	0.553	0.66
374_S	380_L	0.553	0.66
271_G	275_E	0.552	0.66
97_A	100_G	0.551	0.66
143_A	165_G	0.551	0.66
53_M	278_A	0.549	0.66
149_G	386_P	0.549	0.66
98_I	101_A	0.549	0.66
295_Q	347_F	0.548	0.65
356_K	360_S	0.548	0.65
14_G	63_W	0.548	0.65
222_F	226_P	0.547	0.65
21_M	356_K	0.547	0.65
248_S	292_A	0.547	0.65
89_I	100_G	0.546	0.65
339_L	342_A	0.545	0.65
250_G	379_G	0.545	0.65
177_Y	350_V	0.544	0.65
180_K	420_T	0.544	0.65
224_F	227_P	0.544	0.65
223_Y	227_P	0.543	0.65
133_M	351_I	0.543	0.65
175_L	194_A	0.542	0.65
353_Y	356_K	0.542	0.65
358_L	369_L	0.541	0.64
255_L	331_T	0.540	0.64
160_D	198_A	0.539	0.64
208_S	213_A	0.539	0.64
76_L	279_I	0.538	0.64
108_I	162_V	0.537	0.64
25_A	78_C	0.537	0.64
294_S	297_V	0.537	0.64
56_A	285_F	0.535	0.64
294_S	405_V	0.535	0.64
236_T	399_L	0.534	0.63
361_V	369_L	0.534	0.63
25_A	318_L	0.533	0.63
89_I	98_I	0.533	0.63
218_V	242_I	0.533	0.63
407_G	411_A	0.532	0.63
308_V	312_A	0.531	0.63
135_I	293_F	0.531	0.63
164_L	192_L	0.531	0.63
11_M	320_A	0.530	0.63
18_M	237_M	0.528	0.63
301_Q	344_I	0.528	0.63
244_S	252_Y	0.528	0.63
7_A	10_L	0.527	0.62
31_I	87_I	0.527	0.62
412_I	416_A	0.526	0.62
140_I	344_I	0.526	0.62
22_Y	50_D	0.526	0.62
61_Q	308_V	0.525	0.62
181_G	184_R	0.525	0.62
378_L	383_T	0.524	0.62
58_T	291_T	0.523	0.62
219_P	345_V	0.523	0.62
125_P	305_M	0.523	0.62
81_T	240_V	0.522	0.62
313_I	317_I	0.522	0.62
101_A	234_V	0.522	0.62
171_F	190_L	0.519	0.61
193_I	417_F	0.518	0.61
202_M	206_D	0.518	0.61
78_C	143_A	0.517	0.61
101_A	238_L	0.516	0.61
209_E	285_F	0.516	0.61
91_S	97_A	0.515	0.61
197_A	216_L	0.515	0.61
19_L	371_I	0.513	0.60
277_L	312_A	0.512	0.60
101_A	109_V	0.512	0.60
108_I	112_A	0.512	0.60
305_M	339_L	0.512	0.60
63_W	66_R	0.511	0.60
29_P	33_G	0.511	0.60
301_Q	407_G	0.510	0.60
242_I	412_I	0.510	0.60
295_Q	349_M	0.509	0.60
296_N	299_I	0.509	0.60
165_G	303_S	0.509	0.60
358_L	363_L	0.508	0.60
89_I	249_T	0.508	0.60
71_G	87_I	0.508	0.60
82_A	279_I	0.507	0.59
155_E	204_K	0.507	0.59
275_E	373_A	0.505	0.59
121_R	416_A	0.505	0.59
13_L	294_S	0.504	0.59
309_N	313_I	0.503	0.59
351_I	355_I	0.503	0.59
34_A	191_G	0.502	0.59
356_K	364_D	0.502	0.59
211_L	409_L	0.502	0.59
253_F	304_K	0.501	0.59
242_I	395_A	0.501	0.59
201_F	218_V	0.500	0.58
184_R	363_L	0.500	0.58

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3qe7A	2	0.9163	100	0.396	Contact Map
2cfqA	1	0.9047	89.9	0.954	Contact Map
1pw4A	1	0.8977	89.5	0.954	Contact Map
3wdoA	1	0.886	81	0.959	Contact Map
4ikvA	1	0.9256	73.9	0.962	Contact Map
3o7qA	1	0.4047	73.7	0.962	Contact Map
4u4vA	1	0.8767	73.7	0.962	Contact Map
4m64A	1	0.8791	65.9	0.964	Contact Map
4xnjA	1	0.9093	61.6	0.965	Contact Map
4j05A	3	0.8535	54.2	0.966	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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