PUCJ - BACSU - GREMLIN Contacts

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PUCJ - Uric acid permease PucJ

UniProt:	O32139	Sequences: MKKRSFKVFTLSLQHVLAMYAGAILVPLLVGRALNVTTEQLSYLLAIDLLTCGVATLLQTLRGTYIGIGLPVMLGSSFVAVTPMIAIGSNYGIHAIYGSIIAAGVFIFLFARFFGKLTVLFPPVVTGTVVTLIGLSLVPTGVKNMAGGEKINGSANPEYGSLENLLLSVGVLVLILVLNRFLKGFARTLSVLIGIAAGTAAAAIMGKVSFSSVTEAPFFQIPKPFYFGAPAFEIGPILTMLIVGIVIIVESTGVFYAIGKICGRPLTDKDLVKGYRAEGIAILIGGLFNAFPYNTFAQNAGLLQLTKVKTRNIVVTAGCILVCLGLIPKIAALASAVPAAVLGGATVVMFGMVIASGVKMLSTADLKNQYHLLTIACSIALGIGASTAPGIFAEFPAPIRILVSDGTITGSLTAIFLNLFFSLRDKKELTAQQTELPVLEHTLALEKEV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	449 (394)
Sequences:	4328 (2239)
Seq/√Len:	112.8

ECOLI - UACT XANQ XANP YBBY URAA RUTG
BACSU - PUCJ PBUX PUCK YWDJ PYRP

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
174_L	197_A	5.080	1.00
170_G	201_A	5.016	1.00
101_I	286_G	4.906	1.00
145_M	168_S	4.130	1.00
132_L	410_G	3.956	1.00
175_I	194_G	3.849	1.00
218_F	329_K	3.772	1.00
106_F	241_L	3.520	1.00
200_A	204_I	3.504	1.00
50_L	325_G	3.494	1.00
211_S	215_E	3.379	1.00
178_L	193_I	3.212	1.00
94_H	231_A	3.198	1.00
167_L	202_A	3.091	1.00
381_L	413_T	3.071	1.00
95_A	231_A	3.020	1.00
98_G	232_F	2.836	1.00
210_F	213_V	2.753	1.00
167_L	207_K	2.705	1.00
225_F	287_L	2.697	1.00
53_G	322_V	2.681	1.00
378_S	414_A	2.604	1.00
170_G	197_A	2.541	1.00
370_Y	422_S	2.479	1.00
172_L	348_V	2.368	1.00
216_A	329_K	2.344	1.00
16_V	320_I	2.333	1.00
12_S	316_T	2.317	1.00
255_F	274_G	2.311	1.00
101_I	283_L	2.299	1.00
55_A	281_A	2.296	1.00
167_L	205_M	2.275	1.00
102_A	237_I	2.249	1.00
196_A	200_A	2.206	1.00
9_F	320_I	2.176	1.00
8_V	316_T	2.142	1.00
170_G	174_L	2.134	1.00
69_G	268_D	2.125	1.00
166_L	170_G	2.112	1.00
51_T	288_F	2.091	1.00
57_L	315_V	2.084	1.00
120_L	419_L	2.041	1.00
57_L	318_G	2.040	1.00
200_A	203_A	2.032	1.00
108_F	276_R	2.029	1.00
213_V	333_L	2.012	1.00
108_F	283_L	1.985	1.00
111_A	276_R	1.972	1.00
60_T	315_V	1.968	1.00
105_V	109_L	1.965	1.00
174_L	201_A	1.963	1.00
308_V	313_I	1.959	1.00
416_F	420_F	1.885	1.00
174_L	178_L	1.885	1.00
104_G	283_L	1.875	1.00
110_F	248_I	1.837	1.00
259_G	266_L	1.835	1.00
162_L	166_L	1.833	1.00
84_M	96_I	1.819	1.00
163_E	207_K	1.810	1.00
105_V	283_L	1.799	1.00
214_T	217_P	1.795	1.00
212_S	336_A	1.794	1.00
30_V	84_M	1.789	1.00
199_T	336_A	1.767	1.00
50_L	322_V	1.761	1.00
175_I	345_A	1.758	1.00
262_C	265_P	1.755	1.00
135_L	354_I	1.745	1.00
178_L	182_L	1.718	1.00
201_A	205_M	1.709	1.00
100_I	286_G	1.707	1.00
216_A	332_A	1.702	1.00
177_V	181_F	1.681	1.00
166_L	169_V	1.673	1.00
204_I	207_K	1.673	1.00
144_N	339_A	1.656	1.00
319_C	323_C	1.653	1.00
122_P	418_N	1.651	1.00
211_S	214_T	1.637	1.00
108_F	279_G	1.613	1.00
115_G	272_V	1.560	1.00
185_F	189_L	1.556	1.00
270_D	273_K	1.554	1.00
16_V	317_A	1.554	1.00
172_L	377_C	1.540	1.00
52_C	73_M	1.525	1.00
213_V	216_A	1.490	1.00
108_F	280_I	1.476	1.00
267_T	270_D	1.467	1.00
374_T	417_L	1.461	1.00
199_T	208_V	1.452	1.00
62_R	69_G	1.451	1.00
224_P	289_N	1.448	1.00
233_E	236_P	1.445	1.00
378_S	413_T	1.437	1.00
92_G	95_A	1.431	1.00
212_S	215_E	1.421	1.00
186_A	193_I	1.419	1.00
264_R	270_D	1.417	1.00
124_V	375_I	1.413	1.00
198_G	341_V	1.407	1.00
226_Y	289_N	1.387	1.00
203_A	210_F	1.383	1.00
201_A	204_I	1.382	1.00
163_E	205_M	1.369	1.00
95_A	233_E	1.343	1.00
15_H	299_N	1.343	1.00
85_I	88_G	1.342	1.00
87_I	236_P	1.336	1.00
34_L	88_G	1.333	1.00
56_T	73_M	1.330	1.00
381_L	409_T	1.328	1.00
169_V	173_V	1.327	1.00
61_L	315_V	1.326	1.00
57_L	60_T	1.326	1.00
182_L	186_A	1.324	1.00
148_G	160_G	1.317	1.00
303_L	309_K	1.311	1.00
158_E	161_S	1.304	0.99
260_K	363_T	1.298	0.99
104_G	282_I	1.298	0.99
101_I	230_P	1.297	0.99
412_L	416_F	1.286	0.99
400_R	404_S	1.282	0.99
397_A	400_R	1.280	0.99
197_A	201_A	1.276	0.99
19_M	23_A	1.271	0.99
81_V	85_I	1.269	0.99
173_V	177_V	1.262	0.99
182_L	187_R	1.260	0.99
329_K	332_A	1.232	0.99
91_Y	233_E	1.230	0.99
57_L	322_V	1.226	0.99
377_C	413_T	1.224	0.99
6_F	10_T	1.221	0.99
146_A	159_Y	1.214	0.99
224_P	287_L	1.202	0.99
364_A	371_H	1.202	0.99
366_L	375_I	1.197	0.99
50_L	288_F	1.192	0.99
54_V	322_V	1.184	0.99
258_I	303_L	1.183	0.99
60_T	314_V	1.168	0.99
189_L	193_I	1.167	0.99
193_I	197_A	1.166	0.99
232_F	237_I	1.160	0.99
72_V	258_I	1.160	0.99
254_V	297_A	1.157	0.99
124_V	128_T	1.156	0.99
75_G	296_F	1.141	0.99
94_H	228_G	1.138	0.99
104_G	279_G	1.134	0.99
77_S	247_I	1.130	0.99
132_L	382_G	1.124	0.98
220_Q	328_P	1.108	0.98
33_A	223_K	1.102	0.98
142_V	384_G	1.095	0.98
91_Y	95_A	1.086	0.98
101_I	287_L	1.085	0.98
107_I	247_I	1.077	0.98
79_V	247_I	1.072	0.98
147_G	159_Y	1.063	0.98
109_L	113_F	1.051	0.98
66_I	280_I	1.046	0.98
74_L	295_T	1.043	0.98
170_G	205_M	1.040	0.97
18_A	302_L	1.039	0.97
254_V	300_A	1.028	0.97
399_I	402_L	1.026	0.97
234_I	237_I	1.025	0.97
379_I	383_I	1.024	0.97
103_A	244_G	1.022	0.97
250_E	294_N	1.018	0.97
255_F	278_E	1.017	0.97
111_A	272_V	1.012	0.97
203_A	208_V	1.012	0.97
83_P	243_V	1.006	0.97
87_I	240_M	1.002	0.97
166_L	205_M	1.001	0.97
327_I	331_A	1.001	0.97
163_E	166_L	1.001	0.97
67_G	273_K	0.998	0.97
399_I	403_V	0.994	0.97
373_L	377_C	0.991	0.97
285_G	293_Y	0.991	0.97
251_S	255_F	0.988	0.97
54_V	284_I	0.987	0.97
62_R	280_I	0.984	0.96
101_I	232_F	0.984	0.96
98_G	102_A	0.967	0.96
72_V	295_T	0.959	0.96
159_Y	388_A	0.959	0.96
312_N	315_V	0.956	0.96
177_V	420_F	0.952	0.96
143_K	159_Y	0.950	0.96
73_M	317_A	0.949	0.96
13_L	320_I	0.945	0.96
9_F	13_L	0.937	0.95
323_C	327_I	0.936	0.95
26_V	78_F	0.934	0.95
31_G	36_V	0.933	0.95
225_F	228_G	0.932	0.95
251_S	274_G	0.922	0.95
138_V	380_A	0.917	0.95
131_T	379_I	0.913	0.95
15_H	18_A	0.912	0.95
284_I	288_F	0.911	0.95
57_L	319_C	0.911	0.95
54_V	58_L	0.911	0.95
183_K	187_R	0.892	0.94
131_T	358_V	0.886	0.94
354_I	379_I	0.880	0.94
163_E	167_L	0.874	0.93
209_S	212_S	0.873	0.93
99_S	236_P	0.872	0.93
315_V	318_G	0.872	0.93
136_S	407_T	0.864	0.93
99_S	103_A	0.861	0.93
178_L	186_A	0.858	0.93
59_Q	70_L	0.853	0.92
355_A	372_L	0.852	0.92
98_G	230_P	0.851	0.92
202_A	206_G	0.849	0.92
202_A	207_K	0.843	0.92
58_L	62_R	0.840	0.92
91_Y	236_P	0.838	0.92
192_L	196_A	0.837	0.92
217_P	220_Q	0.837	0.92
15_H	19_M	0.836	0.92
147_G	160_G	0.835	0.92
101_I	229_A	0.834	0.92
141_G	171_V	0.832	0.92
330_I	333_L	0.831	0.91
199_T	210_F	0.830	0.91
172_L	176_L	0.830	0.91
367_K	371_H	0.828	0.91
148_G	159_Y	0.828	0.91
218_F	327_I	0.826	0.91
235_G	239_T	0.826	0.91
9_F	316_T	0.825	0.91
121_F	411_S	0.822	0.91
199_T	337_V	0.821	0.91
164_N	340_A	0.820	0.91
53_G	318_G	0.817	0.91
77_S	294_N	0.816	0.91
225_F	230_P	0.816	0.91
111_A	279_G	0.816	0.91
141_G	168_S	0.814	0.91
221_I	326_L	0.811	0.90
107_I	279_G	0.805	0.90
224_P	228_G	0.805	0.90
28_L	342_L	0.804	0.90
167_L	201_A	0.804	0.90
200_A	323_C	0.801	0.90
245_I	249_V	0.801	0.90
72_V	302_L	0.801	0.90
247_I	294_N	0.800	0.90
72_V	255_F	0.799	0.90
11_L	15_H	0.799	0.90
51_T	290_A	0.798	0.90
262_C	309_K	0.797	0.90
51_T	284_I	0.797	0.90
130_V	254_V	0.796	0.90
86_A	90_N	0.794	0.90
60_T	311_R	0.794	0.90
178_L	194_G	0.791	0.89
221_I	224_P	0.789	0.89
28_L	31_G	0.789	0.89
95_A	236_P	0.786	0.89
280_I	284_I	0.785	0.89
51_T	285_G	0.785	0.89
251_S	278_E	0.784	0.89
315_V	319_C	0.782	0.89
252_T	271_L	0.781	0.89
161_S	164_N	0.780	0.89
73_M	314_V	0.779	0.89
146_A	160_G	0.772	0.88
202_A	205_M	0.771	0.88
269_K	273_K	0.768	0.88
144_N	350_F	0.768	0.88
173_V	176_L	0.767	0.88
370_Y	374_T	0.767	0.88
81_V	245_I	0.766	0.88
213_V	336_A	0.764	0.88
179_N	305_L	0.763	0.88
22_G	350_F	0.760	0.87
105_V	108_F	0.759	0.87
300_A	303_L	0.759	0.87
26_V	76_S	0.758	0.87
251_S	294_N	0.757	0.87
324_L	330_I	0.756	0.87
23_A	52_C	0.751	0.87
22_G	298_Q	0.751	0.87
21_A	27_P	0.750	0.87
120_L	415_I	0.750	0.87
205_M	330_I	0.748	0.87
169_V	205_M	0.748	0.87
71_P	314_V	0.745	0.86
79_V	349_M	0.743	0.86
223_K	226_Y	0.742	0.86
306_T	320_I	0.739	0.86
348_V	373_L	0.739	0.86
210_F	336_A	0.737	0.86
112_R	115_G	0.737	0.86
377_C	417_L	0.737	0.86
107_I	244_G	0.736	0.86
174_L	194_G	0.735	0.86
179_N	373_L	0.734	0.85
146_A	165_L	0.733	0.85
144_N	342_L	0.730	0.85
48_D	291_F	0.729	0.85
12_S	317_A	0.729	0.85
174_L	193_I	0.729	0.85
265_P	269_K	0.726	0.85
128_T	378_S	0.722	0.85
374_T	422_S	0.720	0.84
355_A	375_I	0.719	0.84
194_G	197_A	0.717	0.84
19_M	299_N	0.716	0.84
213_V	329_K	0.715	0.84
376_A	380_A	0.714	0.84
351_G	355_A	0.714	0.84
89_S	92_G	0.712	0.84
16_V	324_L	0.711	0.84
76_S	80_A	0.711	0.84
82_T	85_I	0.711	0.84
282_I	293_Y	0.708	0.83
101_I	105_V	0.707	0.83
159_Y	162_L	0.706	0.83
5_S	9_F	0.704	0.83
234_I	238_L	0.703	0.83
145_M	347_V	0.703	0.83
164_N	167_L	0.702	0.83
148_G	158_E	0.696	0.82
229_A	287_L	0.695	0.82
245_I	257_A	0.693	0.82
381_L	385_A	0.693	0.82
385_A	409_T	0.691	0.82
74_L	251_S	0.690	0.82
167_L	340_A	0.690	0.82
48_D	52_C	0.690	0.82
88_G	96_I	0.689	0.82
23_A	48_D	0.687	0.82
374_T	378_S	0.687	0.82
195_I	345_A	0.686	0.81
87_I	99_S	0.684	0.81
107_I	248_I	0.684	0.81
94_H	97_Y	0.684	0.81
48_D	76_S	0.684	0.81
58_L	277_A	0.683	0.81
86_A	89_S	0.682	0.81
19_M	73_M	0.680	0.81
95_A	99_S	0.674	0.80
188_T	422_S	0.674	0.80
25_L	144_N	0.673	0.80
175_I	348_V	0.670	0.80
193_I	196_A	0.668	0.80
415_I	419_L	0.667	0.80
195_I	249_V	0.666	0.79
258_I	300_A	0.666	0.79
186_A	190_S	0.665	0.79
77_S	80_A	0.665	0.79
258_I	295_T	0.664	0.79
221_I	325_G	0.664	0.79
163_E	201_A	0.663	0.79
366_L	371_H	0.662	0.79
84_M	100_I	0.657	0.79
297_A	356_S	0.656	0.78
213_V	332_A	0.656	0.78
5_S	320_I	0.656	0.78
382_G	406_G	0.656	0.78
382_G	410_G	0.656	0.78
131_T	361_L	0.656	0.78
218_F	222_P	0.654	0.78
320_I	324_L	0.653	0.78
102_A	232_F	0.653	0.78
166_L	201_A	0.653	0.78
319_C	363_T	0.649	0.78
25_L	28_L	0.649	0.78
15_H	302_L	0.648	0.78
197_A	204_I	0.648	0.78
93_I	97_Y	0.644	0.77
191_V	302_L	0.643	0.77
195_I	342_L	0.642	0.77
50_L	326_L	0.642	0.77
36_V	327_I	0.642	0.77
178_L	190_S	0.641	0.77
82_T	86_A	0.639	0.77
130_V	133_I	0.636	0.76
143_K	146_A	0.635	0.76
52_C	72_V	0.635	0.76
366_L	372_L	0.632	0.76
180_R	353_V	0.632	0.76
250_E	278_E	0.631	0.76
124_V	371_H	0.629	0.76
79_V	133_I	0.628	0.75
241_L	244_G	0.628	0.75
71_P	262_C	0.628	0.75
247_I	250_E	0.627	0.75
361_L	364_A	0.626	0.75
25_L	29_L	0.626	0.75
197_A	200_A	0.624	0.75
304_Q	359_K	0.623	0.75
398_P	401_I	0.622	0.75
261_I	304_Q	0.621	0.75
138_V	383_I	0.620	0.74
84_M	88_G	0.620	0.74
99_S	237_I	0.620	0.74
182_L	185_F	0.619	0.74
23_A	26_V	0.618	0.74
116_K	120_L	0.617	0.74
70_L	274_G	0.616	0.74
165_L	169_V	0.616	0.74
68_I	270_D	0.615	0.74
9_F	214_T	0.614	0.74
30_V	195_I	0.613	0.74
174_L	177_V	0.610	0.73
59_Q	67_G	0.610	0.73
332_A	335_S	0.609	0.73
124_V	374_T	0.609	0.73
58_L	108_F	0.608	0.73
13_L	146_A	0.608	0.73
144_N	346_T	0.607	0.73
116_K	121_F	0.604	0.73
406_G	410_G	0.604	0.73
266_L	270_D	0.604	0.73
71_P	99_S	0.602	0.72
180_R	355_A	0.602	0.72
332_A	336_A	0.601	0.72
55_A	277_A	0.601	0.72
359_K	363_T	0.600	0.72
244_G	282_I	0.596	0.72
196_A	333_L	0.594	0.71
227_F	230_P	0.593	0.71
283_L	286_G	0.592	0.71
51_T	281_A	0.590	0.71
99_S	241_L	0.588	0.71
254_V	295_T	0.588	0.71
196_A	420_F	0.588	0.71
308_V	342_L	0.587	0.70
122_P	301_G	0.587	0.70
140_T	144_N	0.586	0.70
282_I	285_G	0.586	0.70
204_I	208_V	0.585	0.70
131_T	175_I	0.584	0.70
200_A	214_T	0.582	0.70
138_V	376_A	0.582	0.70
74_L	282_I	0.581	0.70
254_V	356_S	0.581	0.70
240_M	340_A	0.581	0.70
12_S	130_V	0.580	0.70
19_M	359_K	0.580	0.70
109_L	169_V	0.580	0.70
221_I	245_I	0.579	0.69
121_F	184_G	0.579	0.69
13_L	90_N	0.579	0.69
126_T	328_P	0.579	0.69
278_E	294_N	0.579	0.69
210_F	333_L	0.578	0.69
299_N	302_L	0.577	0.69
54_V	288_F	0.576	0.69
283_L	287_L	0.576	0.69
143_K	149_E	0.575	0.69
199_T	203_A	0.574	0.69
147_G	165_L	0.573	0.69
97_Y	101_I	0.573	0.69
203_A	420_F	0.572	0.68
216_A	328_P	0.569	0.68
27_P	31_G	0.568	0.68
131_T	354_I	0.568	0.68
298_Q	350_F	0.567	0.68
184_G	187_R	0.567	0.68
57_L	61_L	0.565	0.68
274_G	278_E	0.565	0.68
377_C	383_I	0.564	0.67
351_G	372_L	0.564	0.67
53_G	57_L	0.563	0.67
257_A	356_S	0.563	0.67
247_I	255_F	0.563	0.67
223_K	228_G	0.562	0.67
410_G	414_A	0.562	0.67
136_S	405_D	0.562	0.67
88_G	91_Y	0.561	0.67
79_V	294_N	0.561	0.67
311_R	315_V	0.560	0.67
84_M	240_M	0.560	0.67
11_L	297_A	0.560	0.67
178_L	181_F	0.560	0.67
175_I	358_V	0.560	0.67
76_S	294_N	0.557	0.66
380_A	383_I	0.557	0.66
5_S	8_V	0.555	0.66
129_V	172_L	0.555	0.66
56_T	294_N	0.554	0.66
122_P	127_G	0.554	0.66
198_G	206_G	0.554	0.66
23_A	321_L	0.552	0.66
88_G	93_I	0.552	0.66
66_I	266_L	0.552	0.66
421_F	424_R	0.551	0.66
87_I	96_I	0.550	0.65
167_L	195_I	0.549	0.65
252_T	256_Y	0.548	0.65
106_F	110_F	0.548	0.65
127_G	357_G	0.547	0.65
136_S	406_G	0.547	0.65
375_I	379_I	0.546	0.65
161_S	166_L	0.545	0.65
356_S	359_K	0.544	0.65
365_D	371_H	0.543	0.64
66_I	130_V	0.540	0.64
106_F	165_L	0.540	0.64
138_V	347_V	0.540	0.64
205_M	208_V	0.539	0.64
23_A	76_S	0.538	0.64
83_P	406_G	0.537	0.64
144_N	168_S	0.537	0.64
83_P	86_A	0.536	0.64
312_N	316_T	0.533	0.63
59_Q	311_R	0.533	0.63
359_K	366_L	0.532	0.63
325_G	331_A	0.532	0.63
177_V	182_L	0.530	0.63
178_L	197_A	0.530	0.63
95_A	98_G	0.530	0.63
80_A	282_I	0.529	0.62
87_I	98_G	0.529	0.62
381_L	386_S	0.528	0.62
76_S	141_G	0.528	0.62
57_L	310_T	0.528	0.62
226_Y	230_P	0.528	0.62
133_I	296_F	0.527	0.62
125_V	418_N	0.527	0.62
128_T	414_A	0.526	0.62
24_I	334_A	0.525	0.62
26_V	48_D	0.525	0.62
253_G	382_G	0.525	0.62
109_L	173_V	0.524	0.62
91_Y	231_A	0.524	0.62
196_A	425_D	0.524	0.62
74_L	255_F	0.523	0.62
56_T	318_G	0.523	0.62
36_V	288_F	0.522	0.61
17_L	374_T	0.522	0.61
370_Y	417_L	0.521	0.61
77_S	285_G	0.521	0.61
222_P	348_V	0.521	0.61
186_A	267_T	0.519	0.61
30_V	68_I	0.519	0.61
239_T	402_L	0.519	0.61
278_E	376_A	0.519	0.61
245_I	415_I	0.517	0.61
297_A	300_A	0.517	0.61
297_A	408_I	0.517	0.61
411_S	414_A	0.517	0.61
251_S	295_T	0.515	0.60
119_V	419_L	0.514	0.60
148_G	164_N	0.514	0.60
160_G	164_N	0.514	0.60
280_I	315_V	0.514	0.60
165_L	386_S	0.513	0.60
256_Y	259_G	0.512	0.60
173_V	196_A	0.512	0.60
123_P	372_L	0.512	0.60
134_G	141_G	0.511	0.60
361_L	366_L	0.511	0.60
20_Y	48_D	0.511	0.60
121_F	187_R	0.510	0.60
359_K	367_K	0.510	0.60
98_G	231_A	0.510	0.60
99_S	107_I	0.509	0.60
121_F	126_T	0.509	0.60
160_G	383_I	0.509	0.60
259_G	264_R	0.509	0.60
76_S	254_V	0.508	0.59
280_I	283_L	0.508	0.59
61_L	319_C	0.507	0.59
221_I	424_R	0.506	0.59
255_F	266_L	0.505	0.59
342_L	345_A	0.505	0.59
74_L	254_V	0.505	0.59
7_K	376_A	0.505	0.59
364_A	372_L	0.504	0.59
32_R	194_G	0.503	0.59
143_K	196_A	0.502	0.59
69_G	85_I	0.502	0.59
88_G	328_P	0.502	0.59
18_A	299_N	0.502	0.59
256_Y	307_K	0.501	0.58
52_C	243_V	0.500	0.58

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3qe7A	2	0.8731	100	0.421	Contact Map
3wdoA	1	0.882	95.3	0.946	Contact Map
4m64A	1	0.8552	94.6	0.948	Contact Map
4pypA	1	0.8864	94	0.95	Contact Map
1pw4A	1	0.8731	92.2	0.953	Contact Map
2cfqA	1	0.8619	91.7	0.953	Contact Map
4j05A	3	0.8508	90.9	0.954	Contact Map
4tphA	2	0.8463	83.9	0.959	Contact Map
4ikvA	1	0.882	82.8	0.96	Contact Map
4ldsA	2	0.8508	80.8	0.961	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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