YUNC - BACSU - GREMLIN Contacts

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YUNC - Uncharacterized protein YunC

UniProt:	O32132	Sequences: MVNLTPIMIEGQPFTAVTVKLPKTNFMAVANDHGYIMCGALDVALLNEKLKERGIVAGRAVGVRTIDQLLDAPLESVTYAAEDLGIKVGMSGREALLKMMK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	101 (99)
Sequences:	168 (106)
Seq/√Len:	10.7

BACSU - YUNC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
16_A	66_I	4.376	1.00
14_F	31_N	4.248	0.99
67_D	71_D	2.775	0.91
54_G	80_A	2.470	0.85
36_I	92_G	2.359	0.82
71_D	93_R	2.295	0.80
29_V	66_I	2.116	0.74
16_A	29_V	2.025	0.71
29_V	96_L	1.988	0.69
14_F	96_L	1.964	0.68
86_I	99_M	1.958	0.68
76_S	86_I	1.836	0.63
17_V	30_A	1.828	0.63
36_I	73_P	1.826	0.62
73_P	92_G	1.822	0.62
58_G	74_L	1.740	0.59
18_T	31_N	1.643	0.54
76_S	81_A	1.627	0.53
77_V	88_V	1.578	0.51
49_K	68_Q	1.519	0.48
28_A	64_R	1.477	0.46
2_V	15_T	1.426	0.44
47_N	55_I	1.414	0.43
4_L	15_T	1.399	0.43
23_K	70_L	1.392	0.42
74_L	77_V	1.374	0.41
52_E	68_Q	1.369	0.41
14_F	18_T	1.334	0.40
82_E	86_I	1.334	0.40
81_A	86_I	1.317	0.39
31_N	96_L	1.297	0.38
3_N	18_T	1.268	0.37
91_S	94_E	1.266	0.37
7_I	29_V	1.231	0.35
39_G	45_L	1.225	0.35
15_T	31_N	1.205	0.34
51_K	61_V	1.191	0.33
19_V	26_F	1.170	0.32
76_S	84_L	1.160	0.32
8_M	11_G	1.152	0.32
74_L	92_G	1.140	0.31
18_T	25_N	1.137	0.31
2_V	17_V	1.121	0.30
47_N	74_L	1.117	0.30
48_E	51_K	1.113	0.30
8_M	13_P	1.107	0.30
28_A	51_K	1.104	0.30
80_A	83_D	1.073	0.29
33_H	80_A	1.059	0.28
83_D	91_S	1.054	0.28
9_I	97_L	1.053	0.28
18_T	66_I	1.048	0.28
25_N	54_G	1.041	0.27
44_A	76_S	1.025	0.27
8_M	15_T	1.015	0.26
29_V	83_D	1.012	0.26
10_E	80_A	0.993	0.26
47_N	58_G	0.971	0.25
64_R	68_Q	0.921	0.23
3_N	30_A	0.905	0.23
43_V	72_A	0.901	0.22
59_R	75_E	0.886	0.22
9_I	79_Y	0.886	0.22
94_E	98_K	0.856	0.21
3_N	17_V	0.851	0.21
4_L	20_K	0.846	0.21
13_P	31_N	0.845	0.21
23_K	82_E	0.830	0.20
48_E	58_G	0.811	0.20
82_E	99_M	0.804	0.19
30_A	51_K	0.800	0.19
27_M	52_E	0.800	0.19
47_N	77_V	0.791	0.19
13_P	51_K	0.783	0.19
18_T	26_F	0.779	0.19
52_E	61_V	0.776	0.19
48_E	64_R	0.771	0.18
70_L	87_K	0.752	0.18
9_I	32_D	0.751	0.18
49_K	65_T	0.741	0.18
10_E	83_D	0.739	0.18
77_V	92_G	0.732	0.17
12_Q	97_L	0.732	0.17
4_L	19_V	0.714	0.17
12_Q	28_A	0.711	0.17
73_P	77_V	0.710	0.17
7_I	87_K	0.697	0.16
33_H	56_V	0.695	0.16
25_N	72_A	0.693	0.16
71_D	90_M	0.690	0.16
79_Y	82_E	0.681	0.16
2_V	19_V	0.681	0.16
2_V	5_T	0.678	0.16
44_A	86_I	0.677	0.16
59_R	76_S	0.677	0.16
17_V	28_A	0.675	0.16
18_T	98_K	0.668	0.16
26_F	64_R	0.659	0.15
65_T	82_E	0.657	0.15
54_G	97_L	0.656	0.15
48_E	79_Y	0.653	0.15
26_F	37_M	0.653	0.15
31_N	98_K	0.652	0.15
8_M	87_K	0.648	0.15
66_I	98_K	0.647	0.15
55_I	86_I	0.634	0.15
14_F	32_D	0.631	0.15
47_N	92_G	0.622	0.15
52_E	91_S	0.620	0.14
68_Q	97_L	0.611	0.14
32_D	87_K	0.609	0.14
30_A	83_D	0.603	0.14
5_T	87_K	0.598	0.14
43_V	73_P	0.597	0.14
4_L	13_P	0.596	0.14
56_V	70_L	0.593	0.14
82_E	88_V	0.578	0.14
12_Q	98_K	0.576	0.13
29_V	91_S	0.576	0.13
16_A	31_N	0.567	0.13
4_L	94_E	0.563	0.13
3_N	8_M	0.559	0.13
7_I	70_L	0.550	0.13
30_A	96_L	0.549	0.13
8_M	94_E	0.549	0.13
15_T	97_L	0.539	0.13
36_I	74_L	0.537	0.13
49_K	70_L	0.532	0.13
43_V	55_I	0.529	0.12
67_D	97_L	0.527	0.12
52_E	64_R	0.525	0.12
88_V	91_S	0.522	0.12
61_V	68_Q	0.522	0.12
5_T	25_N	0.518	0.12
46_L	52_E	0.518	0.12
51_K	79_Y	0.517	0.12
39_G	76_S	0.514	0.12
33_H	81_A	0.513	0.12
36_I	43_V	0.512	0.12
3_N	16_A	0.512	0.12
14_F	97_L	0.511	0.12
10_E	28_A	0.511	0.12
9_I	99_M	0.507	0.12
47_N	99_M	0.506	0.12
39_G	55_I	0.503	0.12
20_K	25_N	0.502	0.12
12_Q	52_E	0.502	0.12
80_A	97_L	0.500	0.12

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1qw2A	3	0.9505	100	0.309	Contact Map
4f50A	1	0.6436	54	0.926	Contact Map
4tqrA	1	0.6931	47.7	0.929	Contact Map
4q45F	1	0.6832	46.8	0.929	Contact Map
3osnA	1	0.6535	43.5	0.931	Contact Map
3mfiA	1	0.8218	41.9	0.931	Contact Map
4ecqA	1	0.7525	37.8	0.933	Contact Map
3pzpA	1	0.8515	33.9	0.935	Contact Map
4dezA	2	0.5842	32.4	0.936	Contact Map
2aq4A	1	0.8614	22.5	0.94	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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