YUNB - BACSU - GREMLIN Contacts

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YUNB - Sporulation protein YunB

UniProt:	O32131	Sequences: MPRYRGPFRKRGPLPFRYVMLLSVVFFILSTTVSLWMINGSIKPVLMDIGEMETKRIATEVIQDSIEDYMSDSENMKDMFQMNSDENGNLTTIDFNTQVVNSVKTKVTKQLQAHLKEMETHTGHSGASENIMINIPLGQVTGNSLLGNLGPKIPVRFNLIGDAFTDVKTKIKPYGINNALIDISIFVEIKVKVIIPFASKTAVVTNNVPVSIKAVQGEVPQFYNGSGGSGVTPSVQLPSSKENGADSKKEKSSK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	254 (207)
Sequences:	430 (377)
Seq/√Len:	26.2

BACSU - YUNB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
89_N	218_E	5.122	1.00
85_D	89_N	4.716	1.00
96_N	99_V	3.709	1.00
171_I	179_A	3.459	1.00
51_E	200_K	3.406	1.00
53_E	56_R	3.068	1.00
174_Y	179_A	2.859	1.00
76_M	181_I	2.771	1.00
178_N	181_I	2.575	0.99
172_K	180_L	2.469	0.99
172_K	182_D	2.430	0.99
81_Q	96_N	2.245	0.98
13_P	17_R	2.220	0.98
171_I	212_I	2.161	0.97
100_V	167_V	2.143	0.97
171_I	181_I	2.096	0.97
178_N	212_I	2.084	0.96
171_I	174_Y	2.076	0.96
164_F	188_E	2.044	0.96
82_M	90_L	2.006	0.96
174_Y	216_Q	1.984	0.95
99_V	102_S	1.919	0.94
138_G	150_G	1.865	0.93
171_I	178_N	1.794	0.92
94_D	209_P	1.784	0.92
137_L	191_V	1.766	0.91
212_I	216_Q	1.755	0.91
153_I	166_D	1.736	0.91
84_S	90_L	1.710	0.90
184_S	204_V	1.651	0.88
66_I	189_I	1.634	0.88
76_M	171_I	1.628	0.88
15_P	19_V	1.593	0.86
188_E	205_T	1.575	0.86
90_L	93_I	1.568	0.86
170_K	182_D	1.564	0.85
62_I	204_V	1.556	0.85
97_T	209_P	1.482	0.82
101_N	179_A	1.475	0.82
108_T	165_T	1.466	0.81
69_Y	111_L	1.460	0.81
174_Y	178_N	1.432	0.80
54_T	157_F	1.405	0.79
65_S	111_L	1.403	0.78
135_I	147_G	1.394	0.78
178_N	216_Q	1.389	0.78
192_K	201_T	1.376	0.77
15_P	18_Y	1.348	0.76
14_L	18_Y	1.336	0.75
95_F	183_I	1.327	0.74
141_T	146_L	1.322	0.74
181_I	213_K	1.320	0.74
23_S	41_S	1.303	0.73
85_D	90_L	1.297	0.73
190_K	203_V	1.279	0.72
34_S	38_I	1.277	0.71
76_M	178_N	1.275	0.71
193_V	202_A	1.253	0.70
139_Q	167_V	1.252	0.70
95_F	171_I	1.250	0.70
93_I	215_V	1.243	0.69
53_E	185_I	1.237	0.69
60_E	183_I	1.236	0.69
184_S	209_P	1.234	0.69
186_F	205_T	1.224	0.68
140_V	219_V	1.219	0.68
85_D	216_Q	1.219	0.68
23_S	27_F	1.218	0.68
96_N	120_T	1.210	0.67
186_F	207_N	1.191	0.66
75_N	78_D	1.186	0.66
185_I	210_V	1.179	0.65
178_N	222_F	1.178	0.65
50_G	155_V	1.176	0.65
79_M	210_V	1.171	0.65
147_G	194_I	1.162	0.64
96_N	107_V	1.154	0.64
56_R	119_E	1.154	0.64
180_L	212_I	1.152	0.63
82_M	219_V	1.151	0.63
76_M	214_A	1.120	0.61
181_I	212_I	1.118	0.61
118_M	147_G	1.108	0.60
105_T	167_V	1.108	0.60
46_L	57_I	1.100	0.60
50_G	209_P	1.098	0.60
161_G	196_P	1.098	0.60
213_K	216_Q	1.094	0.59
30_S	155_V	1.082	0.58
12_G	17_R	1.080	0.58
83_N	89_N	1.077	0.58
114_H	117_E	1.077	0.58
50_G	142_G	1.072	0.58
95_F	100_V	1.070	0.58
97_T	165_T	1.065	0.57
171_I	180_L	1.057	0.57
209_P	212_I	1.055	0.56
38_I	145_L	1.041	0.55
177_N	220_P	1.033	0.55
197_F	209_P	1.031	0.55
141_T	144_S	1.017	0.54
57_I	153_I	1.012	0.53
28_I	168_K	1.007	0.53
26_F	30_S	1.005	0.53
100_V	218_E	0.999	0.52
46_L	157_F	0.977	0.51
35_L	146_L	0.967	0.50
188_E	203_V	0.966	0.50
102_S	210_V	0.961	0.50
169_T	179_A	0.961	0.50
119_E	132_M	0.957	0.49
22_L	140_V	0.954	0.49
94_D	159_L	0.950	0.49
55_K	190_K	0.949	0.49
76_M	212_I	0.941	0.48
152_K	187_V	0.941	0.48
54_T	132_M	0.935	0.48
62_I	160_I	0.934	0.48
22_L	26_F	0.922	0.47
106_K	214_A	0.919	0.46
91_T	163_A	0.916	0.46
178_N	214_A	0.916	0.46
25_V	62_I	0.915	0.46
63_Q	206_N	0.915	0.46
193_V	209_P	0.907	0.46
84_S	141_T	0.907	0.46
142_G	147_G	0.894	0.45
74_E	167_V	0.888	0.44
70_M	96_N	0.886	0.44
181_I	214_A	0.884	0.44
42_I	111_L	0.881	0.44
63_Q	69_Y	0.877	0.43
66_I	171_I	0.873	0.43
16_F	22_L	0.870	0.43
135_I	192_K	0.868	0.43
90_L	216_Q	0.868	0.43
46_L	219_V	0.867	0.43
22_L	87_N	0.859	0.42
69_Y	107_V	0.857	0.42
144_S	208_V	0.857	0.42
71_S	107_V	0.855	0.42
11_R	183_I	0.850	0.41
83_N	208_V	0.845	0.41
167_V	211_S	0.842	0.41
178_N	213_K	0.838	0.41
65_S	110_Q	0.837	0.40
141_T	187_V	0.833	0.40
179_A	212_I	0.831	0.40
159_L	194_I	0.825	0.40
154_P	201_T	0.822	0.39
93_I	96_N	0.821	0.39
79_M	103_V	0.821	0.39
95_F	178_N	0.820	0.39
148_N	192_K	0.815	0.39
137_L	151_P	0.815	0.39
58_A	141_T	0.812	0.39
65_S	219_V	0.811	0.39
44_P	151_P	0.806	0.38
162_D	190_K	0.803	0.38
29_L	113_A	0.799	0.38
164_F	214_A	0.799	0.38
62_I	106_K	0.797	0.38
174_Y	180_L	0.795	0.37
26_F	145_L	0.793	0.37
168_K	186_F	0.791	0.37
74_E	111_L	0.790	0.37
25_V	32_T	0.783	0.37
109_K	183_I	0.779	0.36
65_S	142_G	0.778	0.36
85_D	186_F	0.776	0.36
120_T	132_M	0.774	0.36
48_D	141_T	0.772	0.36
13_P	88_G	0.770	0.36
171_I	182_D	0.770	0.36
174_Y	212_I	0.761	0.35
14_L	19_V	0.759	0.35
134_N	155_V	0.759	0.35
39_N	121_H	0.758	0.35
50_G	151_P	0.758	0.35
174_Y	181_I	0.755	0.35
152_K	155_V	0.754	0.35
101_N	212_I	0.752	0.35
55_K	162_D	0.748	0.34
24_V	32_T	0.746	0.34
73_S	163_A	0.741	0.34
49_I	53_E	0.738	0.34
36_W	142_G	0.734	0.33
156_R	188_E	0.733	0.33
186_F	193_V	0.733	0.33
159_L	171_I	0.727	0.33
191_V	201_T	0.726	0.33
135_I	206_N	0.725	0.33
41_S	195_I	0.724	0.33
49_I	147_G	0.715	0.32
62_I	193_V	0.715	0.32
24_V	27_F	0.708	0.32
107_V	201_T	0.706	0.32
103_V	224_N	0.706	0.32
137_L	219_V	0.704	0.31
42_I	187_V	0.704	0.31
37_M	144_S	0.703	0.31
113_A	119_E	0.703	0.31
178_N	182_D	0.698	0.31
44_P	191_V	0.696	0.31
141_T	153_I	0.696	0.31
165_T	187_V	0.696	0.31
141_T	149_L	0.694	0.31
79_M	223_Y	0.690	0.31
86_E	137_L	0.686	0.30
92_T	155_V	0.685	0.30
91_T	213_K	0.683	0.30
173_P	193_V	0.674	0.30
105_T	185_I	0.671	0.29
85_D	91_T	0.670	0.29
14_L	21_L	0.669	0.29
66_I	219_V	0.669	0.29
175_G	220_P	0.669	0.29
58_A	194_I	0.664	0.29
68_D	87_N	0.663	0.29
28_I	170_K	0.661	0.29
15_P	20_M	0.660	0.29
168_K	207_N	0.657	0.28
93_I	166_D	0.656	0.28
29_L	33_V	0.655	0.28
171_I	215_V	0.655	0.28
27_F	115_L	0.654	0.28
15_P	155_V	0.653	0.28
192_K	202_A	0.653	0.28
17_R	210_V	0.651	0.28
95_F	104_K	0.648	0.28
113_A	203_V	0.647	0.28
20_M	210_V	0.639	0.27
153_I	191_V	0.638	0.27
73_S	188_E	0.637	0.27
18_Y	22_L	0.634	0.27
76_M	183_I	0.630	0.27
148_N	212_I	0.628	0.27
132_M	178_N	0.628	0.27
115_L	161_G	0.616	0.26
63_Q	182_D	0.614	0.26
23_S	40_G	0.613	0.26
188_E	208_V	0.613	0.26
182_D	212_I	0.609	0.26
59_T	166_D	0.608	0.26
155_V	188_E	0.607	0.26
171_I	216_Q	0.607	0.26
55_K	66_I	0.606	0.25
186_F	208_V	0.605	0.25
191_V	203_V	0.605	0.25
190_K	201_T	0.603	0.25
118_M	202_A	0.598	0.25
24_V	163_A	0.595	0.25
185_I	208_V	0.592	0.25
157_F	194_I	0.590	0.25
141_T	160_I	0.589	0.25
139_Q	142_G	0.588	0.24
97_T	213_K	0.588	0.24
90_L	215_V	0.580	0.24
178_N	226_S	0.576	0.24
78_D	137_L	0.571	0.24
13_P	18_Y	0.570	0.24
15_P	160_I	0.568	0.23
85_D	132_M	0.565	0.23
61_V	135_I	0.565	0.23
185_I	193_V	0.565	0.23
76_M	95_F	0.564	0.23
17_R	23_S	0.563	0.23
78_D	109_K	0.562	0.23
38_I	42_I	0.560	0.23
26_F	116_K	0.558	0.23
37_M	166_D	0.557	0.23
139_Q	209_P	0.555	0.23
97_T	211_S	0.553	0.23
60_E	214_A	0.549	0.22
38_I	166_D	0.547	0.22
113_A	117_E	0.545	0.22
29_L	200_K	0.543	0.22
69_Y	106_K	0.541	0.22
210_V	224_N	0.539	0.22
34_S	145_L	0.538	0.22
119_E	149_L	0.538	0.22
27_F	36_W	0.537	0.22
56_R	211_S	0.535	0.22
115_L	205_T	0.534	0.22
25_V	30_S	0.533	0.22
47_M	91_T	0.533	0.22
67_E	70_M	0.532	0.22
210_V	218_E	0.532	0.22
32_T	59_T	0.532	0.22
135_I	198_A	0.527	0.21
217_G	220_P	0.527	0.21
144_S	167_V	0.527	0.21
117_E	120_T	0.521	0.21
85_D	197_F	0.519	0.21
182_D	222_F	0.519	0.21
110_Q	221_Q	0.518	0.21
121_H	132_M	0.517	0.21
117_E	140_V	0.516	0.21
25_V	77_K	0.515	0.21
198_A	210_V	0.514	0.21
106_K	111_L	0.512	0.21
41_S	146_L	0.511	0.21
167_V	182_D	0.507	0.20
76_M	216_Q	0.507	0.20
51_E	72_D	0.507	0.20
19_V	27_F	0.505	0.20
34_S	59_T	0.502	0.20
38_I	219_V	0.501	0.20
173_P	178_N	0.500	0.20
31_T	154_P	0.500	0.20

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2kogA	1	0.1535	57.3	0.947	Contact Map
2m8rA	1	0.1575	46.8	0.95	Contact Map
3hd7A	1	0.1535	44.4	0.951	Contact Map
3fymA	1	0	38.6	0.952	Contact Map
3bboT	1	0.1181	11.5	0.963	Contact Map
1ybxA	2	0.3425	11.4	0.963	Contact Map
1vx7g	1	0.063	9.6	0.964	Contact Map
4yayA	1	0.2756	8.5	0.965	Contact Map
3owqA	1	0.5512	8.2	0.965	Contact Map
1j8bA	2	0.3465	7.3	0.966	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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