YUTH - BACSU - GREMLIN Contacts

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YUTH - Endospore coat-associated protein YutH

UniProt:	O32123	Sequences: MVKGTIKEKYGIHIRQLSMYQHTYQCFQTPNSYFLIVPVSQFSETELAELYYMSQYLQEQSDPYVSVFIFTKEGELTFEHEGKTYALLKAAPPYSNRAFSIGAELAEFHRKGRGYPYEVKAAGRIGQWKDLWGKRIDQLEAFWQRKVQTPPHEPFDKKMIESFPYYLGLSENAIQYLVDTELDDKPQAADSGTICHQRMERHTWSPESLIRIPADWVFDHASRDLAEYMRHTFLHHRQDFNQQGFLFLQEYEQVTPLSSFSKRLLYSRLLFPLHYFEIVESYYMSSESEKHYFEEQLDFILNDCGRYEQFLNTAQEFMNMRAQKLFVPRVSWLGKGSSR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	339 (306)
Sequences:	790 (677)
Seq/√Len:	38.7

BACSU - YUTH YSXE COTS COTI

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
71_T	78_F	7.918	1.00
106_A	254_V	6.528	1.00
162_S	275_Y	4.367	1.00
11_G	72_K	4.105	1.00
105_L	199_M	3.713	1.00
133_G	178_V	3.313	1.00
34_F	89_K	3.307	1.00
222_S	265_L	3.301	1.00
155_F	282_Y	2.939	1.00
26_C	90_A	2.904	1.00
156_D	283_Y	2.762	1.00
252_E	262_K	2.680	1.00
104_E	210_I	2.680	1.00
70_F	76_L	2.673	1.00
36_I	87_L	2.588	1.00
29_T	32_S	2.570	1.00
203_T	212_I	2.560	1.00
102_G	247_F	2.545	1.00
225_L	265_L	2.472	1.00
58_Q	67_V	2.383	1.00
12_I	29_T	2.347	1.00
159_M	279_V	2.347	1.00
136_I	174_I	2.339	1.00
103_A	253_Q	2.289	1.00
181_E	260_F	2.237	0.99
219_D	223_R	2.207	0.99
199_M	210_I	2.183	0.99
24_Y	212_I	2.149	0.99
53_M	194_I	2.088	0.99
155_F	159_M	2.038	0.99
12_I	87_L	2.021	0.99
10_Y	71_T	2.017	0.99
37_V	212_I	1.963	0.99
168_G	171_E	1.935	0.98
196_H	203_T	1.912	0.98
62_D	104_E	1.893	0.98
34_F	69_I	1.880	0.98
168_G	172_N	1.868	0.98
67_V	89_K	1.790	0.97
101_I	228_Y	1.770	0.97
110_R	255_T	1.735	0.97
102_G	250_E	1.733	0.97
298_D	302_N	1.727	0.97
136_I	170_S	1.722	0.97
13_H	30_P	1.711	0.97
37_V	214_A	1.707	0.97
176_Y	267_S	1.705	0.96
113_R	191_S	1.667	0.96
35_L	90_A	1.644	0.96
244_G	310_F	1.641	0.96
56_Y	114_G	1.628	0.95
235_H	274_H	1.626	0.95
173_A	267_S	1.603	0.95
24_Y	37_V	1.602	0.95
158_K	298_D	1.563	0.94
29_T	34_F	1.557	0.94
38_P	83_K	1.554	0.94
12_I	34_F	1.546	0.94
90_A	238_Q	1.531	0.94
182_L	185_K	1.524	0.93
230_R	274_H	1.520	0.93
149_T	156_D	1.512	0.93
143_W	164_P	1.502	0.93
134_K	229_M	1.494	0.93
153_E	156_D	1.479	0.92
136_I	171_E	1.478	0.92
222_S	261_S	1.458	0.92
195_C	310_F	1.457	0.92
198_R	212_I	1.448	0.92
229_M	233_F	1.440	0.91
172_N	175_Q	1.440	0.91
226_A	268_R	1.434	0.91
203_T	214_A	1.423	0.91
16_Q	28_Q	1.414	0.91
169_L	307_Y	1.409	0.90
175_Q	179_D	1.395	0.90
172_N	176_Y	1.374	0.89
184_D	187_Q	1.370	0.89
237_R	306_R	1.366	0.89
57_L	247_F	1.365	0.89
37_V	203_T	1.363	0.89
71_T	77_T	1.361	0.89
177_L	182_L	1.359	0.89
233_F	238_Q	1.311	0.87
112_G	193_T	1.308	0.87
18_S	26_C	1.307	0.87
211_R	214_A	1.295	0.86
60_Q	207_E	1.283	0.86
37_V	211_R	1.278	0.85
31_N	207_E	1.262	0.85
108_F	213_P	1.244	0.84
6_I	10_Y	1.244	0.84
225_L	251_Y	1.236	0.83
9_K	73_E	1.235	0.83
195_C	271_F	1.227	0.83
197_Q	200_E	1.226	0.83
166_Y	275_Y	1.219	0.83
35_L	88_L	1.206	0.82
77_T	84_T	1.205	0.82
227_E	268_R	1.199	0.82
24_Y	35_L	1.177	0.80
177_L	180_T	1.172	0.80
143_W	163_F	1.171	0.80
113_R	121_A	1.169	0.80
37_V	196_H	1.167	0.80
181_E	184_D	1.166	0.80
130_D	133_G	1.162	0.79
221_A	255_T	1.155	0.79
185_K	261_S	1.153	0.79
170_S	238_Q	1.147	0.79
56_Y	115_Y	1.137	0.78
262_K	314_A	1.124	0.77
288_S	296_Q	1.122	0.77
173_A	177_L	1.110	0.76
37_V	198_R	1.104	0.76
105_L	109_H	1.085	0.75
230_R	276_F	1.084	0.74
160_I	275_Y	1.082	0.74
10_Y	135_R	1.082	0.74
176_Y	266_Y	1.080	0.74
55_Q	67_V	1.079	0.74
66_S	88_L	1.078	0.74
205_S	208_S	1.077	0.74
179_D	263_R	1.076	0.74
128_W	219_D	1.073	0.74
24_Y	211_R	1.073	0.74
96_N	101_I	1.072	0.74
229_M	248_L	1.071	0.74
274_H	277_E	1.065	0.73
198_R	202_H	1.052	0.72
163_F	275_Y	1.044	0.72
66_S	199_M	1.037	0.71
135_R	277_E	1.035	0.71
113_R	255_T	1.034	0.71
17_L	27_F	1.032	0.71
57_L	229_M	1.031	0.71
155_F	278_I	1.024	0.70
197_Q	223_R	1.010	0.69
32_S	177_L	1.010	0.69
96_N	204_W	1.001	0.68
210_I	265_L	1.001	0.68
202_H	231_H	0.993	0.68
200_E	219_D	0.990	0.68
108_F	216_W	0.989	0.67
112_G	221_A	0.983	0.67
156_D	296_Q	0.978	0.67
66_S	212_I	0.975	0.66
276_F	310_F	0.975	0.66
202_H	296_Q	0.975	0.66
85_Y	141_A	0.973	0.66
34_F	87_L	0.967	0.66
217_V	223_R	0.963	0.65
139_L	159_M	0.957	0.65
90_A	196_H	0.951	0.64
135_R	156_D	0.950	0.64
172_N	311_L	0.948	0.64
68_F	86_A	0.946	0.64
213_P	234_L	0.946	0.64
24_Y	214_A	0.946	0.64
298_D	301_L	0.940	0.63
51_Y	70_F	0.938	0.63
229_M	276_F	0.937	0.63
159_M	282_Y	0.934	0.63
196_H	214_A	0.929	0.63
282_Y	296_Q	0.926	0.62
210_I	222_S	0.925	0.62
39_V	47_L	0.925	0.62
130_D	205_S	0.922	0.62
102_G	106_A	0.921	0.62
106_A	251_Y	0.921	0.62
135_R	271_F	0.918	0.62
166_Y	173_A	0.918	0.62
251_Y	257_L	0.916	0.61
176_Y	270_L	0.915	0.61
169_L	304_C	0.907	0.61
178_V	305_G	0.898	0.60
34_F	172_N	0.885	0.59
204_W	226_A	0.880	0.58
184_D	259_S	0.878	0.58
199_M	204_W	0.877	0.58
137_D	175_Q	0.874	0.58
79_E	84_T	0.870	0.57
37_V	90_A	0.867	0.57
229_M	244_G	0.864	0.57
163_F	167_L	0.863	0.57
54_S	213_P	0.863	0.57
12_I	94_Y	0.859	0.56
176_Y	263_R	0.858	0.56
252_E	256_P	0.856	0.56
159_M	304_C	0.856	0.56
7_K	221_A	0.856	0.56
27_F	297_L	0.854	0.56
106_A	256_P	0.842	0.55
7_K	10_Y	0.842	0.55
154_P	298_D	0.841	0.55
223_R	227_E	0.840	0.55
116_P	137_D	0.840	0.55
108_F	153_E	0.840	0.55
93_P	96_N	0.839	0.55
65_V	106_A	0.835	0.54
199_M	216_W	0.829	0.54
136_I	140_E	0.829	0.54
10_Y	86_A	0.827	0.54
19_M	37_V	0.822	0.53
213_P	216_W	0.822	0.53
17_L	25_Q	0.821	0.53
157_K	161_E	0.815	0.53
14_I	29_T	0.814	0.52
313_T	316_E	0.805	0.52
49_E	112_G	0.803	0.51
28_Q	33_Y	0.801	0.51
136_I	271_F	0.800	0.51
127_Q	130_D	0.798	0.51
156_D	197_Q	0.797	0.51
166_Y	169_L	0.797	0.51
185_K	264_L	0.797	0.51
10_Y	78_F	0.793	0.51
246_L	250_E	0.792	0.50
90_A	159_M	0.791	0.50
7_K	265_L	0.789	0.50
202_H	307_Y	0.787	0.50
196_H	212_I	0.784	0.50
90_A	214_A	0.784	0.50
9_K	165_Y	0.784	0.50
103_A	312_N	0.783	0.50
224_D	272_P	0.780	0.49
134_K	138_Q	0.780	0.49
153_E	157_K	0.776	0.49
109_H	251_Y	0.771	0.49
32_S	261_S	0.769	0.48
153_E	291_H	0.763	0.48
49_E	198_R	0.758	0.47
30_P	207_E	0.753	0.47
231_H	288_S	0.752	0.47
12_I	107_E	0.749	0.47
165_Y	168_G	0.745	0.46
277_E	280_E	0.743	0.46
200_E	274_H	0.739	0.46
99_F	250_E	0.738	0.46
103_A	259_S	0.734	0.45
305_G	312_N	0.734	0.45
57_L	71_T	0.733	0.45
40_S	118_E	0.731	0.45
135_R	303_D	0.730	0.45
200_E	212_I	0.729	0.45
197_Q	215_D	0.727	0.45
196_H	213_P	0.726	0.45
190_D	248_L	0.724	0.44
180_T	263_R	0.724	0.44
226_A	273_L	0.723	0.44
153_E	290_K	0.723	0.44
14_I	32_S	0.719	0.44
192_G	218_F	0.717	0.44
57_L	193_T	0.717	0.44
140_E	174_I	0.717	0.44
32_S	89_K	0.717	0.44
230_R	268_R	0.714	0.43
15_R	30_P	0.714	0.43
52_Y	115_Y	0.714	0.43
253_Q	299_F	0.711	0.43
156_D	212_I	0.708	0.43
90_A	194_I	0.703	0.43
307_Y	310_F	0.702	0.42
231_H	296_Q	0.702	0.42
69_I	210_I	0.701	0.42
78_F	210_I	0.698	0.42
47_L	86_A	0.698	0.42
138_Q	155_F	0.697	0.42
99_F	246_L	0.696	0.42
125_I	128_W	0.696	0.42
38_P	138_Q	0.694	0.42
6_I	90_A	0.692	0.42
165_Y	171_E	0.691	0.41
163_F	178_V	0.691	0.41
139_L	282_Y	0.689	0.41
165_Y	308_E	0.688	0.41
175_Q	178_V	0.687	0.41
8_E	74_G	0.686	0.41
304_C	311_L	0.684	0.41
103_A	250_E	0.683	0.41
126_G	135_R	0.682	0.41
26_C	37_V	0.681	0.41
93_P	97_R	0.680	0.40
203_T	238_Q	0.679	0.40
203_T	213_P	0.675	0.40
52_Y	87_L	0.675	0.40
304_C	307_Y	0.672	0.40
20_Y	225_L	0.672	0.40
198_R	203_T	0.670	0.40
253_Q	309_Q	0.666	0.39
60_Q	129_K	0.665	0.39
168_G	179_D	0.665	0.39
28_Q	91_A	0.664	0.39
26_C	35_L	0.663	0.39
199_M	203_T	0.663	0.39
292_Y	296_Q	0.663	0.39
149_T	276_F	0.661	0.39
164_P	283_Y	0.661	0.39
141_A	284_M	0.661	0.39
10_Y	122_A	0.660	0.39
266_Y	311_L	0.659	0.39
179_D	242_Q	0.657	0.39
105_L	310_F	0.656	0.38
250_E	254_V	0.656	0.38
57_L	60_Q	0.656	0.38
6_I	27_F	0.656	0.38
264_L	268_R	0.655	0.38
128_W	284_M	0.655	0.38
71_T	148_Q	0.654	0.38
140_E	258_S	0.647	0.38
91_A	212_I	0.646	0.38
72_K	187_Q	0.645	0.37
262_K	265_L	0.644	0.37
128_W	182_L	0.643	0.37
50_L	234_L	0.642	0.37
61_S	207_E	0.641	0.37
14_I	27_F	0.640	0.37
92_P	168_G	0.638	0.37
75_E	253_Q	0.635	0.37
90_A	203_T	0.634	0.37
220_H	264_L	0.634	0.37
6_I	299_F	0.634	0.37
26_C	66_S	0.633	0.36
115_Y	194_I	0.632	0.36
94_Y	198_R	0.627	0.36
24_Y	112_G	0.625	0.36
44_E	139_L	0.624	0.36
197_Q	213_P	0.623	0.36
200_E	227_E	0.622	0.36
303_D	310_F	0.622	0.36
48_A	108_F	0.622	0.36
50_L	53_M	0.621	0.35
158_K	161_E	0.621	0.35
16_Q	220_H	0.620	0.35
7_K	14_I	0.619	0.35
197_Q	214_A	0.616	0.35
204_W	233_F	0.616	0.35
68_F	76_L	0.613	0.35
129_K	174_I	0.610	0.35
238_Q	310_F	0.609	0.34
74_G	309_Q	0.609	0.34
26_C	31_N	0.608	0.34
73_E	305_G	0.606	0.34
51_Y	76_L	0.606	0.34
119_V	171_E	0.605	0.34
91_A	209_L	0.602	0.34
154_P	177_L	0.601	0.34
250_E	304_C	0.600	0.34
10_Y	212_I	0.599	0.34
63_P	253_Q	0.598	0.34
242_Q	313_T	0.598	0.34
109_H	272_P	0.597	0.34
227_E	277_E	0.594	0.33
69_I	74_G	0.593	0.33
105_L	272_P	0.593	0.33
187_Q	257_L	0.590	0.33
24_Y	204_W	0.590	0.33
128_W	227_E	0.589	0.33
221_A	235_H	0.589	0.33
135_R	276_F	0.588	0.33
195_C	229_M	0.588	0.33
194_I	222_S	0.587	0.33
66_S	274_H	0.585	0.33
91_A	97_R	0.585	0.33
201_R	231_H	0.583	0.32
233_F	292_Y	0.583	0.32
194_I	314_A	0.582	0.32
68_F	160_I	0.582	0.32
16_Q	207_E	0.580	0.32
10_Y	68_F	0.577	0.32
132_W	223_R	0.577	0.32
139_L	225_L	0.576	0.32
115_Y	212_I	0.576	0.32
94_Y	247_F	0.575	0.32
58_Q	63_P	0.572	0.32
69_I	77_T	0.571	0.31
168_G	175_Q	0.569	0.31
219_D	268_R	0.569	0.31
166_Y	284_M	0.568	0.31
183_D	257_L	0.567	0.31
226_A	230_R	0.567	0.31
97_R	276_F	0.566	0.31
199_M	289_E	0.565	0.31
137_D	143_W	0.565	0.31
112_G	211_R	0.565	0.31
275_Y	278_I	0.563	0.31
15_R	254_V	0.562	0.31
228_Y	233_F	0.562	0.31
172_N	270_L	0.562	0.31
161_E	301_L	0.560	0.31
27_F	95_S	0.560	0.31
115_Y	123_G	0.560	0.31
93_P	279_V	0.560	0.31
59_E	297_L	0.559	0.31
15_R	28_Q	0.559	0.31
97_R	305_G	0.559	0.31
156_D	282_Y	0.558	0.30
7_K	27_F	0.557	0.30
144_Q	309_Q	0.556	0.30
204_W	248_L	0.556	0.30
93_P	203_T	0.554	0.30
66_S	90_A	0.551	0.30
160_I	283_Y	0.551	0.30
132_W	140_E	0.550	0.30
175_Q	258_S	0.549	0.30
249_Q	253_Q	0.547	0.30
151_P	290_K	0.546	0.30
23_T	66_S	0.546	0.30
84_T	211_R	0.545	0.29
59_E	206_P	0.544	0.29
180_T	185_K	0.543	0.29
282_Y	293_F	0.541	0.29
213_P	282_Y	0.540	0.29
121_A	157_K	0.539	0.29
138_Q	282_Y	0.538	0.29
19_M	95_S	0.537	0.29
108_F	210_I	0.536	0.29
190_D	260_F	0.536	0.29
253_Q	256_P	0.536	0.29
99_F	239_D	0.536	0.29
143_W	147_V	0.535	0.29
135_R	197_Q	0.535	0.29
198_R	215_D	0.535	0.29
78_F	142_F	0.534	0.29
163_F	266_Y	0.534	0.29
40_S	313_T	0.533	0.29
54_S	68_F	0.533	0.29
12_I	110_R	0.528	0.28
227_E	230_R	0.527	0.28
129_K	163_F	0.525	0.28
102_G	114_G	0.525	0.28
140_E	269_L	0.523	0.28
176_Y	262_K	0.523	0.28
49_E	54_S	0.523	0.28
9_K	14_I	0.522	0.28
103_A	245_F	0.520	0.28
19_M	25_Q	0.518	0.27
289_E	293_F	0.517	0.27
169_L	172_N	0.513	0.27
30_P	237_R	0.513	0.27
49_E	216_W	0.512	0.27
5_T	34_F	0.512	0.27
223_R	268_R	0.510	0.27
175_Q	242_Q	0.509	0.27
217_V	267_S	0.509	0.27
183_D	259_S	0.508	0.27
116_P	218_F	0.508	0.27
186_P	189_A	0.508	0.27
93_P	98_A	0.508	0.27
112_G	147_V	0.507	0.27
176_Y	179_D	0.506	0.27
195_C	219_D	0.504	0.27
110_R	254_V	0.503	0.26
238_Q	271_F	0.503	0.26
230_R	235_H	0.503	0.26
12_I	127_Q	0.502	0.26
235_H	286_S	0.501	0.26
59_E	245_F	0.501	0.26
197_Q	314_A	0.500	0.26

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4pdyA	1	0.9174	100	0.412	Contact Map
2q83A	1	0.9056	100	0.474	Contact Map
2ppqA	2	0.823	100	0.668	Contact Map
4ocvA	1	0.8879	99.9	0.679	Contact Map
3i1aA	1	0.8761	99.9	0.709	Contact Map
1zylA	1	0.882	99.9	0.722	Contact Map
3jr1A	1	0.7847	99.8	0.76	Contact Map
3mesA	2	0.8702	99.7	0.769	Contact Map
4dcaA	1	0.7817	99.7	0.774	Contact Map
3csvA	2	0.8555	99.7	0.777	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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