BESA - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

BESA - Ferri-bacillibactin esterase BesA

UniProt:	O32102	Sequences: MKEQTTDRTNGGTSNAFTIPGTEVRMMSSRNENRTYHIFISKPSTPPPPAGYPVIYLLDANSVFGTMTEAVRIQGRRPEKTGVIPAVIVGIGYETAEPFSSARHRDFTMPTAQSKLPERPDGREWPEHGGAEGFFRFIEEDLKPEIERDYQIDKKRQTIFGHSLGGLFVLQVLLTKPDAFQTYIAGSPSIHWNKPFILKKTDHFVSLTKKNNQPINILLAAGELEQHHKSRMNDNARELYERLAVLSEQGIRAEFCEFSGEGHISVLPVLVSRALRFALHPDGPHLSMG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	289 (236)
Sequences:	7716 (5765)
Seq/√Len:	375.3

ECOLI - FES SFGH1 SFGH2 YIEL
BACSU - BESA YJCH YBBA
SULSO - Q97UM5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
173_L	183_Y	3.615	1.00
147_E	157_Q	3.503	1.00
28_S	35_T	3.419	1.00
136_R	140_E	2.776	1.00
145_E	149_D	2.750	1.00
147_E	152_I	2.693	1.00
240_Y	244_A	2.622	1.00
185_A	188_P	2.504	1.00
55_I	86_A	2.463	1.00
256_C	273_R	2.444	1.00
45_T	85_P	2.385	1.00
223_E	259_S	2.320	1.00
201_T	204_F	2.317	1.00
26_M	35_T	2.301	1.00
186_G	274_A	2.264	1.00
87_V	152_I	2.248	1.00
135_F	172_V	2.220	1.00
46_P	151_Q	2.192	1.00
233_N	237_R	2.173	1.00
135_F	176_K	2.097	1.00
153_D	156_R	2.092	1.00
143_K	157_Q	2.065	1.00
54_V	89_V	2.058	1.00
240_Y	253_A	1.992	1.00
52_Y	87_V	1.977	1.00
55_I	160_F	1.965	1.00
237_R	257_E	1.955	1.00
220_A	270_L	1.946	1.00
242_R	249_Q	1.930	1.00
28_S	33_N	1.928	1.00
40_I	89_V	1.922	1.00
89_V	146_I	1.918	1.00
56_Y	157_Q	1.884	1.00
184_I	274_A	1.824	1.00
24_V	37_H	1.814	1.00
158_T	182_T	1.798	1.00
57_L	160_F	1.783	1.00
56_Y	143_K	1.744	1.00
46_P	52_Y	1.715	1.00
26_M	37_H	1.664	1.00
139_E	176_K	1.618	1.00
27_M	137_F	1.612	1.00
146_I	152_I	1.586	1.00
137_F	142_L	1.585	1.00
50_A	85_P	1.575	1.00
197_I	200_K	1.572	1.00
42_K	87_V	1.556	1.00
135_F	175_T	1.508	1.00
25_R	38_I	1.504	1.00
74_Q	88_I	1.491	1.00
82_G	276_R	1.468	1.00
56_Y	147_E	1.466	1.00
143_K	179_A	1.458	1.00
241_E	245_V	1.435	1.00
101_S	109_M	1.432	1.00
238_E	241_E	1.428	1.00
201_T	205_V	1.418	1.00
109_M	136_R	1.386	1.00
193_N	196_F	1.374	1.00
38_I	142_L	1.353	1.00
159_I	169_V	1.349	1.00
69_E	72_R	1.342	1.00
126_P	129_G	1.333	1.00
182_T	216_N	1.332	1.00
171_Q	175_T	1.326	1.00
202_D	205_V	1.324	1.00
223_E	257_E	1.324	1.00
31_N	141_D	1.302	1.00
58_L	134_F	1.301	1.00
183_Y	217_I	1.280	1.00
194_K	197_I	1.280	1.00
84_I	275_L	1.272	1.00
23_E	150_Y	1.270	1.00
240_Y	255_F	1.260	1.00
241_E	244_A	1.253	1.00
29_S	141_D	1.242	1.00
188_P	236_A	1.220	1.00
237_R	241_E	1.219	1.00
170_L	190_I	1.201	1.00
45_T	52_Y	1.199	1.00
191_H	238_E	1.199	1.00
23_E	42_K	1.192	1.00
218_L	256_C	1.190	1.00
24_V	39_F	1.186	1.00
272_S	276_R	1.185	1.00
56_Y	89_V	1.180	1.00
236_A	255_F	1.171	1.00
170_L	185_A	1.168	1.00
196_F	200_K	1.166	1.00
54_V	152_I	1.158	1.00
87_V	150_Y	1.156	1.00
58_L	168_F	1.154	1.00
157_Q	179_A	1.150	1.00
139_E	179_A	1.142	1.00
25_R	149_D	1.134	1.00
160_F	184_I	1.133	1.00
242_R	245_V	1.131	1.00
42_K	46_P	1.124	1.00
31_N	140_E	1.123	1.00
25_R	145_E	1.122	1.00
169_V	183_Y	1.114	1.00
38_I	145_E	1.109	1.00
143_K	147_E	1.101	1.00
41_S	75_G	1.098	1.00
102_A	109_M	1.098	1.00
162_H	268_P	1.082	1.00
55_I	88_I	1.072	1.00
38_I	137_F	1.071	1.00
51_G	151_Q	1.046	1.00
140_E	144_P	1.044	1.00
56_Y	146_I	1.041	1.00
240_Y	257_E	1.040	1.00
140_E	176_K	1.032	1.00
145_E	148_R	1.031	1.00
216_N	252_R	1.022	1.00
187_S	268_P	1.012	1.00
166_G	185_A	1.010	1.00
52_Y	151_Q	1.006	1.00
184_I	278_A	0.999	1.00
200_K	204_F	0.998	1.00
223_E	258_F	0.996	1.00
57_L	68_T	0.991	1.00
160_F	186_G	0.991	1.00
31_N	136_R	0.990	1.00
243_L	253_A	0.990	1.00
139_E	172_V	0.987	1.00
53_P	86_A	0.985	1.00
135_F	139_E	0.985	1.00
216_N	277_F	0.982	1.00
258_F	270_L	0.973	1.00
219_L	236_A	0.969	1.00
103_R	109_M	0.967	1.00
76_R	80_K	0.965	1.00
167_L	171_Q	0.952	1.00
58_L	159_I	0.945	1.00
254_E	277_F	0.943	1.00
86_A	279_L	0.939	1.00
234_D	238_E	0.928	1.00
139_E	180_F	0.927	1.00
39_F	92_G	0.927	1.00
29_S	32_E	0.923	1.00
91_I	138_I	0.920	1.00
69_E	73_I	0.919	1.00
158_T	279_L	0.914	1.00
195_P	200_K	0.904	1.00
37_H	65_G	0.900	1.00
107_F	199_K	0.898	1.00
57_L	271_V	0.898	1.00
196_F	199_K	0.893	1.00
258_F	273_R	0.891	1.00
37_H	92_G	0.890	1.00
83_V	86_A	0.890	1.00
54_V	87_V	0.888	1.00
200_K	203_H	0.887	1.00
194_K	198_L	0.887	1.00
47_P	50_A	0.886	1.00
32_E	36_Y	0.883	1.00
156_R	181_Q	0.883	1.00
30_R	141_D	0.882	1.00
169_V	185_A	0.875	1.00
68_T	74_Q	0.874	1.00
221_A	232_M	0.873	1.00
198_L	202_D	0.873	1.00
76_R	272_S	0.873	1.00
20_P	41_S	0.862	1.00
235_N	238_E	0.862	1.00
48_P	52_Y	0.860	1.00
54_V	157_Q	0.857	1.00
137_F	141_D	0.854	1.00
36_Y	137_F	0.850	1.00
185_A	219_L	0.849	1.00
199_K	202_D	0.848	1.00
106_D	109_M	0.844	1.00
273_R	276_R	0.838	1.00
170_L	217_I	0.836	1.00
57_L	90_G	0.833	1.00
193_N	200_K	0.830	1.00
48_P	51_G	0.825	1.00
162_H	265_S	0.824	1.00
105_R	108_T	0.824	1.00
176_K	179_A	0.823	1.00
144_P	180_F	0.814	1.00
186_G	268_P	0.810	1.00
138_I	172_V	0.810	1.00
58_L	91_I	0.810	1.00
143_K	180_F	0.807	1.00
187_S	225_E	0.807	1.00
42_K	52_Y	0.804	1.00
190_I	239_L	0.803	1.00
239_L	243_L	0.800	1.00
163_S	263_H	0.799	1.00
193_N	197_I	0.797	1.00
244_A	253_A	0.794	1.00
52_Y	85_P	0.793	1.00
219_L	239_L	0.793	1.00
70_A	74_Q	0.787	1.00
159_I	183_Y	0.784	1.00
182_T	278_A	0.778	1.00
56_Y	180_F	0.776	1.00
143_K	146_I	0.775	1.00
131_A	168_F	0.773	1.00
84_I	276_R	0.773	1.00
222_G	225_E	0.773	1.00
219_L	240_Y	0.770	1.00
192_W	198_L	0.766	1.00
224_L	260_G	0.765	1.00
46_P	87_V	0.763	1.00
104_H	164_L	0.758	1.00
107_F	168_F	0.757	1.00
192_W	195_P	0.755	1.00
102_A	105_R	0.741	1.00
105_R	109_M	0.739	1.00
261_E	267_L	0.738	1.00
40_I	150_Y	0.731	1.00
139_E	143_K	0.729	1.00
185_A	217_I	0.728	1.00
195_P	199_K	0.728	1.00
222_G	260_G	0.727	1.00
159_I	172_V	0.725	1.00
223_E	260_G	0.718	1.00
195_P	198_L	0.717	1.00
258_F	261_E	0.717	1.00
258_F	267_L	0.715	1.00
109_M	133_G	0.709	1.00
86_A	275_L	0.708	1.00
140_E	179_A	0.707	0.99
103_R	106_D	0.707	0.99
30_R	33_N	0.706	0.99
108_T	111_T	0.705	0.99
154_K	157_Q	0.698	0.99
232_M	235_N	0.696	0.99
64_F	90_G	0.692	0.99
139_E	144_P	0.692	0.99
147_E	154_K	0.689	0.99
54_V	146_I	0.687	0.99
221_A	236_A	0.685	0.99
157_Q	181_Q	0.683	0.99
210_K	213_Q	0.679	0.99
271_V	275_L	0.675	0.99
173_L	215_I	0.674	0.99
193_N	199_K	0.672	0.99
70_A	73_I	0.671	0.99
220_A	258_F	0.671	0.99
135_F	171_Q	0.669	0.99
66_T	70_A	0.668	0.99
103_R	107_F	0.666	0.99
193_N	198_L	0.666	0.99
198_L	203_H	0.665	0.99
87_V	151_Q	0.662	0.99
67_M	265_S	0.662	0.99
198_L	201_T	0.659	0.99
59_D	64_F	0.654	0.99
243_L	251_I	0.648	0.99
32_E	141_D	0.643	0.99
233_N	257_E	0.643	0.99
186_G	220_A	0.641	0.99
186_G	270_L	0.640	0.99
40_I	87_V	0.638	0.99
54_V	88_I	0.638	0.99
46_P	152_I	0.633	0.99
55_I	275_L	0.630	0.99
89_V	142_L	0.627	0.99
147_E	179_A	0.626	0.99
219_L	253_A	0.626	0.99
187_S	222_G	0.624	0.99
75_G	79_E	0.624	0.99
53_P	85_P	0.620	0.99
68_T	72_R	0.618	0.99
58_L	107_F	0.618	0.99
59_D	67_M	0.616	0.99
144_P	148_R	0.615	0.99
24_V	66_T	0.614	0.99
51_G	152_I	0.613	0.99
197_I	202_D	0.610	0.99
165_G	168_F	0.609	0.99
58_L	169_V	0.607	0.98
59_D	63_V	0.606	0.98
200_K	205_V	0.605	0.98
42_K	150_Y	0.605	0.98
25_R	40_I	0.602	0.98
77_R	272_S	0.602	0.98
47_P	51_G	0.601	0.98
46_P	49_P	0.600	0.98
71_V	75_G	0.598	0.98
232_M	236_A	0.591	0.98
144_P	179_A	0.591	0.98
134_F	168_F	0.585	0.98
158_T	184_I	0.584	0.98
91_I	142_L	0.583	0.98
76_R	79_E	0.581	0.98
106_D	110_P	0.580	0.98
24_V	65_G	0.580	0.98
212_N	215_I	0.578	0.98
77_R	276_R	0.575	0.98
154_K	181_Q	0.573	0.98
213_Q	251_I	0.573	0.98
22_T	39_F	0.571	0.98
39_F	65_G	0.571	0.98
41_S	88_I	0.570	0.98
56_Y	152_I	0.570	0.98
162_H	188_P	0.569	0.98
146_I	150_Y	0.567	0.98
211_N	214_P	0.566	0.98
208_T	211_N	0.566	0.98
68_T	162_H	0.565	0.98
217_I	251_I	0.564	0.98
219_L	243_L	0.563	0.98
181_Q	215_I	0.563	0.98
270_L	273_R	0.562	0.98
105_R	111_T	0.561	0.97
133_G	136_R	0.557	0.97
57_L	70_A	0.556	0.97
36_Y	93_Y	0.554	0.97
25_R	150_Y	0.551	0.97
87_V	146_I	0.551	0.97
215_I	251_I	0.551	0.97
192_W	197_I	0.551	0.97
189_S	232_M	0.545	0.97
168_F	172_V	0.544	0.97
68_T	268_P	0.543	0.97
236_A	253_A	0.543	0.97
70_A	75_G	0.542	0.97
59_D	91_I	0.541	0.97
55_I	158_T	0.541	0.97
220_A	267_L	0.538	0.97
105_R	110_P	0.537	0.97
81_T	84_I	0.535	0.97
48_P	151_Q	0.535	0.97
210_K	214_P	0.533	0.97
69_E	90_G	0.533	0.97
100_S	107_F	0.532	0.97
166_G	188_P	0.531	0.96
101_S	105_R	0.530	0.96
73_I	76_R	0.529	0.96
234_D	237_R	0.528	0.96
41_S	44_S	0.521	0.96
220_A	256_C	0.521	0.96
59_D	103_R	0.520	0.96
238_E	242_R	0.519	0.96
77_R	80_K	0.518	0.96
76_R	83_V	0.517	0.96
72_R	76_R	0.516	0.96
68_T	90_G	0.516	0.96
214_P	251_I	0.516	0.96
142_L	145_E	0.516	0.96
63_V	67_M	0.514	0.96
226_Q	231_R	0.510	0.96
136_R	176_K	0.504	0.95
192_W	196_F	0.503	0.95
31_N	133_G	0.503	0.95
108_T	164_L	0.502	0.95
51_G	147_E	0.502	0.95
196_F	201_T	0.501	0.95
27_M	38_I	0.500	0.95

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3gffA	2	0.8858	100	0.441	Contact Map
4w9rA	2	0.827	100	0.45	Contact Map
2gzsA	1	0.8581	100	0.488	Contact Map
2qm0A	3	0.9308	100	0.497	Contact Map
1jjfA	1	0.8512	100	0.498	Contact Map
3c8dA	2	0.8443	100	0.503	Contact Map
3ls2A	2	0.872	100	0.507	Contact Map
3e4dA	3	0.8754	100	0.528	Contact Map
3i6yA	1	0.8789	100	0.529	Contact Map
4rotA	4	0.8131	100	0.533	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0093 seconds.