YRBD - BACSU - GREMLIN Contacts

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YRBD - Putative sodium/proton-dependent alanine carrier protein YrbD

UniProt:	O32060	Sequences: MADFVASLNAVLWSTPVIYILLGIGFAFSIMTRFLQVRHLKEMIVQMFKGKSSEAGVSSFQALSIALSGRVGTGNIAGVATAIAFGGPGAVFWMWAIAFIGAASAFVESTLAQIYKVKQDGQYRGGPAYYIEKGLGIKWFAVLFAAAALIAMAFLMPGVQSNSIAAGIQNAFGISPFVTGCGLVLLLGFIIFGGVKRIANAAQMIVPFMAIGYILLSLIIIVMNVSELPAVISLIFKSAFALDSAFGGLIGMAISWGVKRGIYSNEAGQGTGPHPAAAAEVSHPVKQGLVQAFSVYIDTLFVCSATAFMILFTGMYNTQAADGSFIVHQLKGVEAGPGFTQAAIDSVLPGFGAGFVAIALFFFAFTTIMAYYYIAETNIAYLARGRESKWAMLGLKLIILAATFYGTVKTASLAWALGDAGLGIMVWLNVIAIVLLAKPALLALKDYERQKKQGLDPIFDPKALGIKNADFWEKEYTHESERVS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	484 (434)
Sequences:	3790 (2342)
Seq/√Len:	112.4

ECOLI - YAAJ
BACSU - YRBD GLNT ALST YFLA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
91_V	307_A	4.780	1.00
114_I	443_A	4.141	1.00
217_S	305_A	3.578	1.00
131_I	432_A	3.461	1.00
107_V	440_A	3.382	1.00
225_V	228_L	3.265	1.00
117_V	133_K	3.099	1.00
304_S	308_F	3.058	1.00
135_L	435_L	3.011	1.00
106_F	444_L	2.968	1.00
233_S	237_K	2.944	1.00
219_I	223_M	2.793	1.00
37_V	99_F	2.760	1.00
227_E	230_A	2.718	1.00
232_I	236_F	2.710	1.00
202_A	366_T	2.665	1.00
31_M	441_L	2.631	1.00
24_I	434_V	2.567	1.00
201_A	205_I	2.502	1.00
132_E	138_K	2.437	1.00
375_A	395_L	2.410	1.00
148_A	378_N	2.409	1.00
6_A	10_A	2.408	1.00
184_V	400_L	2.369	1.00
234_L	238_S	2.366	1.00
143_L	147_A	2.351	1.00
115_Y	439_P	2.237	1.00
171_A	357_A	2.181	1.00
211_I	215_L	2.179	1.00
7_S	11_V	2.173	1.00
24_I	430_V	2.148	1.00
26_F	100_I	2.131	1.00
230_A	233_S	2.117	1.00
132_E	381_Y	2.079	1.00
197_R	200_N	2.064	1.00
131_I	141_A	2.063	1.00
241_A	244_S	2.049	1.00
188_G	400_L	2.031	1.00
9_N	420_A	1.999	1.00
283_H	446_D	1.992	1.00
75_N	298_D	1.978	1.00
31_M	438_K	1.966	1.00
231_V	311_L	1.963	1.00
5_V	420_A	1.931	1.00
91_V	235_I	1.903	1.00
27_A	437_A	1.900	1.00
181_C	185_L	1.876	1.00
412_S	416_A	1.873	1.00
222_V	225_V	1.866	1.00
42_E	45_V	1.861	1.00
41_K	45_V	1.842	1.00
184_V	404_F	1.829	1.00
142_V	382_L	1.829	1.00
283_H	450_Q	1.823	1.00
393_L	396_K	1.807	1.00
5_V	416_A	1.798	1.00
296_Y	300_L	1.781	1.00
186_L	361_F	1.771	1.00
282_S	286_K	1.736	1.00
427_W	431_I	1.731	1.00
177_F	404_F	1.709	1.00
205_I	362_F	1.706	1.00
376_E	396_K	1.687	1.00
285_V	443_A	1.679	1.00
255_S	259_K	1.670	1.00
147_A	424_I	1.669	1.00
83_I	91_V	1.667	1.00
231_V	308_F	1.663	1.00
29_S	36_Q	1.652	1.00
77_A	336_G	1.620	1.00
61_Q	199_A	1.602	1.00
256_W	259_K	1.589	1.00
233_S	236_F	1.587	1.00
33_R	445_K	1.576	1.00
38_R	448_E	1.574	1.00
42_E	447_Y	1.569	1.00
4_F	8_L	1.568	1.00
175_S	178_V	1.568	1.00
13_W	423_G	1.557	1.00
246_F	249_L	1.536	1.00
228_L	231_V	1.513	1.00
85_F	256_W	1.508	1.00
223_M	226_S	1.503	1.00
188_G	192_F	1.491	1.00
254_I	258_V	1.489	1.00
112_A	277_A	1.488	1.00
21_L	262_I	1.488	1.00
379_I	383_A	1.488	1.00
191_I	372_Y	1.478	1.00
438_K	442_L	1.478	1.00
215_L	219_I	1.472	1.00
443_A	446_D	1.465	1.00
397_L	401_A	1.458	1.00
144_F	425_M	1.446	1.00
64_S	202_A	1.439	1.00
42_E	46_Q	1.438	1.00
221_I	312_F	1.437	1.00
178_V	182_G	1.436	1.00
393_L	397_L	1.432	1.00
132_E	142_V	1.426	1.00
138_K	141_A	1.422	1.00
102_A	296_Y	1.422	1.00
3_D	6_A	1.415	1.00
221_I	228_L	1.412	1.00
276_A	291_Q	1.412	1.00
446_D	450_Q	1.411	1.00
71_V	302_V	1.410	1.00
217_S	309_M	1.404	1.00
29_S	34_F	1.402	1.00
180_G	407_T	1.401	1.00
61_Q	203_Q	1.401	1.00
20_I	434_V	1.400	1.00
165_A	179_T	1.399	1.00
221_I	308_F	1.395	1.00
223_M	347_V	1.392	1.00
164_I	183_L	1.390	1.00
142_V	146_A	1.389	1.00
114_I	439_P	1.389	1.00
31_M	437_A	1.386	1.00
32_T	35_L	1.377	1.00
15_T	19_Y	1.370	1.00
238_S	242_L	1.366	1.00
234_L	311_L	1.359	1.00
95_W	304_S	1.350	1.00
229_P	233_S	1.345	1.00
33_R	448_E	1.343	1.00
449_R	453_Q	1.337	1.00
8_L	420_A	1.337	1.00
59_S	281_V	1.333	1.00
200_N	203_Q	1.333	1.00
441_L	445_K	1.322	1.00
73_T	360_L	1.320	1.00
131_I	140_F	1.319	1.00
231_V	312_F	1.306	0.99
222_V	226_S	1.288	0.99
345_D	353_A	1.287	0.99
5_V	413_L	1.282	0.99
27_A	31_M	1.278	0.99
144_F	273_P	1.276	0.99
417_L	421_G	1.267	0.99
159_V	418_G	1.255	0.99
278_A	373_Y	1.253	0.99
221_I	225_V	1.252	0.99
269_Q	426_V	1.234	0.99
175_S	179_T	1.225	0.99
174_I	179_T	1.224	0.99
439_P	442_L	1.208	0.99
40_L	44_I	1.203	0.99
34_F	37_V	1.199	0.99
60_F	64_S	1.198	0.99
186_L	365_F	1.197	0.99
58_S	61_Q	1.191	0.99
105_A	109_S	1.184	0.99
118_K	123_Y	1.182	0.99
27_A	441_L	1.171	0.99
200_N	204_M	1.169	0.99
226_S	229_P	1.168	0.99
275_P	374_I	1.166	0.99
39_H	448_E	1.165	0.99
201_A	369_M	1.165	0.99
237_K	243_D	1.165	0.99
218_L	222_V	1.164	0.99
404_F	408_V	1.164	0.99
99_F	300_L	1.162	0.99
180_G	404_F	1.161	0.99
368_I	403_T	1.159	0.99
63_L	297_I	1.157	0.99
161_S	407_T	1.156	0.99
149_L	379_I	1.153	0.99
134_G	436_L	1.152	0.99
214_I	218_L	1.147	0.99
8_L	11_V	1.144	0.99
76_I	337_P	1.141	0.99
177_F	181_C	1.139	0.99
234_L	237_K	1.138	0.99
36_Q	103_A	1.133	0.99
315_M	342_A	1.127	0.98
238_S	241_A	1.127	0.98
39_H	289_L	1.126	0.98
136_G	139_W	1.124	0.98
219_I	348_L	1.122	0.98
149_L	152_M	1.121	0.98
20_I	427_W	1.121	0.98
247_G	251_G	1.118	0.98
348_L	351_F	1.113	0.98
383_A	391_A	1.113	0.98
28_F	107_V	1.112	0.98
7_S	10_A	1.108	0.98
109_S	291_Q	1.100	0.98
77_A	163_S	1.090	0.98
342_A	346_S	1.089	0.98
224_N	312_F	1.086	0.98
40_L	296_Y	1.082	0.98
130_Y	432_A	1.081	0.98
306_T	340_T	1.080	0.98
19_Y	23_G	1.077	0.98
342_A	345_D	1.072	0.98
313_T	347_V	1.064	0.98
313_T	343_A	1.062	0.98
97_I	258_V	1.060	0.98
205_I	366_T	1.058	0.98
156_M	371_Y	1.056	0.98
252_M	256_W	1.054	0.98
166_A	338_G	1.053	0.98
84_A	339_F	1.052	0.98
178_V	181_C	1.045	0.98
214_I	305_A	1.044	0.98
187_L	365_F	1.043	0.98
310_I	339_F	1.042	0.97
135_L	139_W	1.042	0.97
224_N	227_E	1.038	0.97
65_I	195_V	1.038	0.97
110_T	288_G	1.036	0.97
22_L	97_I	1.031	0.97
310_I	340_T	1.030	0.97
354_G	358_I	1.029	0.97
193_G	197_R	1.028	0.97
106_F	110_T	1.027	0.97
379_I	391_A	1.026	0.97
139_W	143_L	1.026	0.97
106_F	285_V	1.025	0.97
185_L	189_F	1.024	0.97
220_I	347_V	1.024	0.97
293_F	297_I	1.023	0.97
3_D	7_S	1.019	0.97
69_G	370_A	1.017	0.97
110_T	285_V	1.016	0.97
338_G	342_A	1.014	0.97
225_V	229_P	1.005	0.97
355_F	359_A	1.004	0.97
228_L	232_I	1.002	0.97
152_M	271_T	1.000	0.97
230_A	234_L	0.999	0.97
445_K	449_R	0.997	0.97
47_M	290_V	0.996	0.97
59_S	290_V	0.995	0.97
124_R	377_T	0.992	0.97
426_V	430_V	0.991	0.97
401_A	405_Y	0.990	0.97
246_F	250_I	0.987	0.97
39_H	42_E	0.985	0.96
102_A	300_L	0.984	0.96
220_I	344_I	0.983	0.96
80_A	340_T	0.977	0.96
243_D	249_L	0.976	0.96
17_V	423_G	0.964	0.96
245_A	248_G	0.964	0.96
138_K	142_V	0.963	0.96
61_Q	200_N	0.960	0.96
307_A	311_L	0.952	0.96
244_S	247_G	0.951	0.96
22_L	262_I	0.951	0.96
43_M	293_F	0.949	0.96
405_Y	409_K	0.949	0.96
4_F	7_S	0.947	0.96
95_W	232_I	0.944	0.96
80_A	310_I	0.944	0.96
392_M	396_K	0.942	0.95
42_E	451_K	0.938	0.95
208_F	212_G	0.936	0.95
266_E	271_T	0.935	0.95
148_A	425_M	0.935	0.95
196_K	200_N	0.933	0.95
117_V	132_E	0.933	0.95
252_M	255_S	0.932	0.95
450_Q	454_G	0.924	0.95
444_L	448_E	0.924	0.95
83_I	310_I	0.921	0.95
150_I	421_G	0.919	0.95
83_I	307_A	0.914	0.95
227_E	312_F	0.910	0.95
163_S	360_L	0.910	0.95
335_A	338_G	0.908	0.94
44_I	293_F	0.908	0.94
162_N	415_W	0.907	0.94
352_G	356_V	0.907	0.94
32_T	441_L	0.906	0.94
245_A	249_L	0.904	0.94
79_V	303_C	0.904	0.94
127_P	273_P	0.902	0.94
302_V	305_A	0.902	0.94
170_N	338_G	0.902	0.94
187_L	368_I	0.901	0.94
20_I	24_I	0.900	0.94
169_Q	176_P	0.899	0.94
172_F	354_G	0.898	0.94
264_S	298_D	0.896	0.94
140_F	432_A	0.895	0.94
102_A	292_A	0.890	0.94
221_I	231_V	0.888	0.94
312_F	347_V	0.888	0.94
56_G	280_E	0.887	0.94
398_I	401_A	0.882	0.94
434_V	437_A	0.882	0.94
109_S	294_S	0.882	0.94
43_M	292_A	0.881	0.94
123_Y	280_E	0.877	0.93
88_P	234_L	0.875	0.93
219_I	222_V	0.864	0.93
166_A	169_Q	0.862	0.93
83_I	311_L	0.862	0.93
267_A	295_V	0.859	0.93
28_F	433_I	0.858	0.93
67_L	71_V	0.857	0.93
439_P	443_A	0.855	0.92
85_F	250_I	0.853	0.92
156_M	269_Q	0.853	0.92
168_I	361_F	0.851	0.92
212_G	359_A	0.847	0.92
77_A	80_A	0.845	0.92
167_G	341_Q	0.845	0.92
435_L	438_K	0.843	0.92
190_I	201_A	0.841	0.92
70_R	105_A	0.840	0.92
18_I	22_L	0.839	0.92
92_F	240_F	0.838	0.92
131_I	139_W	0.836	0.92
437_A	441_L	0.834	0.92
92_F	96_A	0.832	0.91
416_A	420_A	0.831	0.91
31_M	34_F	0.830	0.91
161_S	368_I	0.827	0.91
158_G	409_K	0.826	0.91
187_L	403_T	0.826	0.91
76_I	356_V	0.822	0.91
296_Y	301_F	0.822	0.91
152_M	395_L	0.820	0.91
83_I	316_Y	0.818	0.91
57_V	199_A	0.818	0.91
282_S	447_Y	0.815	0.91
46_Q	290_V	0.813	0.90
107_V	110_T	0.813	0.90
273_P	277_A	0.812	0.90
305_A	309_M	0.812	0.90
345_D	350_G	0.809	0.90
300_L	304_S	0.808	0.90
6_A	416_A	0.805	0.90
220_I	309_M	0.804	0.90
29_S	37_V	0.804	0.90
216_L	359_A	0.803	0.90
81_T	256_W	0.803	0.90
204_M	208_F	0.796	0.90
232_I	308_F	0.795	0.89
113_Q	116_K	0.795	0.89
119_Q	385_G	0.792	0.89
75_N	264_S	0.791	0.89
156_M	422_L	0.789	0.89
71_V	210_A	0.789	0.89
50_G	53_S	0.788	0.89
314_G	317_N	0.788	0.89
107_V	441_L	0.787	0.89
12_L	16_P	0.784	0.89
147_A	428_L	0.782	0.89
198_I	373_Y	0.782	0.89
206_V	209_M	0.781	0.89
157_P	418_G	0.781	0.89
291_Q	294_S	0.780	0.89
23_G	434_V	0.780	0.89
117_V	124_R	0.779	0.89
377_T	380_A	0.778	0.88
63_L	290_V	0.774	0.88
140_F	143_L	0.773	0.88
127_P	130_Y	0.772	0.88
125_G	277_A	0.771	0.88
281_V	286_K	0.769	0.88
163_S	337_P	0.767	0.88
234_L	316_Y	0.767	0.88
12_L	427_W	0.766	0.88
242_L	245_A	0.766	0.88
169_Q	179_T	0.764	0.88
35_L	444_L	0.760	0.87
180_G	408_V	0.758	0.87
226_S	230_A	0.757	0.87
16_P	19_Y	0.757	0.87
25_G	101_G	0.756	0.87
286_K	447_Y	0.755	0.87
216_L	355_F	0.753	0.87
264_S	299_T	0.753	0.87
192_F	393_L	0.750	0.87
345_D	349_P	0.750	0.87
43_M	289_L	0.749	0.86
402_A	405_Y	0.748	0.86
70_R	291_Q	0.747	0.86
216_L	348_L	0.747	0.86
235_I	307_A	0.743	0.86
49_K	52_S	0.742	0.86
4_F	11_V	0.740	0.86
438_K	445_K	0.739	0.86
409_K	414_A	0.738	0.86
17_V	426_V	0.737	0.86
391_A	394_G	0.737	0.86
195_V	373_Y	0.737	0.86
25_G	100_I	0.734	0.85
232_I	304_S	0.733	0.85
105_A	272_G	0.730	0.85
11_V	15_T	0.730	0.85
238_S	243_D	0.727	0.85
35_L	39_H	0.727	0.85
210_A	302_V	0.726	0.85
64_S	203_Q	0.726	0.85
290_V	294_S	0.724	0.85
440_A	444_L	0.724	0.85
354_G	357_A	0.723	0.85
351_F	354_G	0.722	0.84
313_T	318_T	0.722	0.84
84_A	335_A	0.721	0.84
177_F	408_V	0.715	0.84
168_I	179_T	0.712	0.84
206_V	210_A	0.711	0.84
18_I	262_I	0.711	0.84
69_G	371_Y	0.709	0.83
101_G	104_S	0.709	0.83
228_L	308_F	0.707	0.83
313_T	316_Y	0.705	0.83
169_Q	173_G	0.700	0.83
32_T	444_L	0.699	0.82
47_M	293_F	0.698	0.82
81_T	84_A	0.698	0.82
209_M	264_S	0.695	0.82
276_A	294_S	0.695	0.82
166_A	170_N	0.691	0.82
159_V	415_W	0.690	0.82
49_K	53_S	0.688	0.81
109_S	276_A	0.688	0.81
15_T	18_I	0.687	0.81
341_Q	345_D	0.687	0.81
451_K	454_G	0.686	0.81
55_A	280_E	0.685	0.81
445_K	448_E	0.685	0.81
195_V	198_I	0.682	0.81
184_V	188_G	0.680	0.81
46_Q	447_Y	0.679	0.81
139_W	142_V	0.678	0.81
283_H	447_Y	0.676	0.80
223_M	227_E	0.675	0.80
68_S	295_V	0.675	0.80
237_K	241_A	0.673	0.80
65_I	370_A	0.673	0.80
394_G	397_L	0.672	0.80
152_M	371_Y	0.670	0.80
167_G	337_P	0.669	0.80
356_V	359_A	0.669	0.80
371_Y	422_L	0.668	0.80
158_G	161_S	0.667	0.79
236_F	311_L	0.667	0.79
186_L	189_F	0.666	0.79
33_R	41_K	0.666	0.79
156_M	418_G	0.665	0.79
32_T	107_V	0.664	0.79
214_I	217_S	0.663	0.79
73_T	364_A	0.662	0.79
237_K	242_L	0.660	0.79
85_F	252_M	0.660	0.79
308_F	312_F	0.660	0.79
438_K	441_L	0.660	0.79
350_G	353_A	0.659	0.79
337_P	360_L	0.657	0.78
34_F	99_F	0.654	0.78
227_E	231_V	0.654	0.78
56_G	123_Y	0.654	0.78
224_N	347_V	0.651	0.78
271_T	371_Y	0.648	0.77
98_A	299_T	0.648	0.77
264_S	300_L	0.648	0.77
164_I	364_A	0.647	0.77
285_V	440_A	0.647	0.77
35_L	103_A	0.647	0.77
335_A	339_F	0.643	0.77
76_I	363_F	0.641	0.77
172_F	179_T	0.641	0.77
12_L	426_V	0.638	0.76
438_K	443_A	0.635	0.76
71_V	297_I	0.635	0.76
107_V	444_L	0.635	0.76
157_P	399_I	0.632	0.76
269_Q	422_L	0.630	0.75
91_V	95_W	0.630	0.75
54_E	118_K	0.630	0.75
128_A	378_N	0.628	0.75
154_F	398_I	0.627	0.75
63_L	294_S	0.626	0.75
357_A	361_F	0.626	0.75
142_V	145_A	0.625	0.75
212_G	358_I	0.625	0.75
249_L	316_Y	0.624	0.75
156_M	426_V	0.621	0.74
73_T	163_S	0.620	0.74
124_R	380_A	0.618	0.74
235_I	311_L	0.617	0.74
28_F	437_A	0.617	0.74
157_P	371_Y	0.617	0.74
212_G	216_L	0.616	0.74
46_Q	286_K	0.614	0.74
213_Y	217_S	0.614	0.74
435_L	439_P	0.614	0.74
242_L	246_F	0.611	0.73
84_A	319_Q	0.610	0.73
69_G	269_Q	0.610	0.73
315_M	318_T	0.610	0.73
152_M	156_M	0.610	0.73
106_F	440_A	0.607	0.73
94_M	299_T	0.607	0.73
24_I	28_F	0.605	0.73
220_I	313_T	0.602	0.72
297_I	301_F	0.602	0.72
47_M	297_I	0.602	0.72
37_V	41_K	0.602	0.72
110_T	440_A	0.601	0.72
112_A	273_P	0.595	0.71
180_G	184_V	0.593	0.71
320_A	338_G	0.590	0.71
96_A	236_F	0.590	0.71
81_T	411_A	0.589	0.71
110_T	443_A	0.589	0.71
227_E	234_L	0.586	0.70
309_M	344_I	0.586	0.70
405_Y	408_V	0.583	0.70
218_L	221_I	0.583	0.70
17_V	427_W	0.583	0.70
40_L	102_A	0.581	0.70
98_A	101_G	0.581	0.70
316_Y	343_A	0.580	0.69
45_V	48_F	0.580	0.69
315_M	339_F	0.579	0.69
70_R	276_A	0.579	0.69
97_I	262_I	0.579	0.69
253_A	256_W	0.579	0.69
159_V	414_A	0.579	0.69
131_I	137_I	0.578	0.69
241_A	249_L	0.576	0.69
313_T	317_N	0.576	0.69
130_Y	429_N	0.576	0.69
114_I	442_L	0.575	0.69
77_A	335_A	0.574	0.69
59_S	279_A	0.574	0.69
187_L	191_I	0.572	0.68
95_W	236_F	0.570	0.68
214_I	301_F	0.570	0.68
249_L	252_M	0.568	0.68
151_A	422_L	0.568	0.68
276_A	287_Q	0.567	0.68
179_T	183_L	0.567	0.68
145_A	382_L	0.567	0.68
340_T	343_A	0.566	0.68
195_V	199_A	0.566	0.68
431_I	435_L	0.566	0.68
81_T	415_W	0.565	0.67
143_L	146_A	0.565	0.67
243_D	246_F	0.565	0.67
173_G	176_P	0.564	0.67
127_P	274_H	0.563	0.67
81_T	336_G	0.563	0.67
107_V	433_I	0.562	0.67
395_L	399_I	0.562	0.67
191_I	396_K	0.560	0.67
168_I	172_F	0.559	0.67
142_V	381_Y	0.558	0.66
277_A	396_K	0.557	0.66
110_T	444_L	0.556	0.66
182_G	185_L	0.554	0.66
272_G	374_I	0.553	0.66
33_R	438_K	0.552	0.66
57_V	65_I	0.552	0.66
128_A	274_H	0.552	0.66
92_F	236_F	0.550	0.65
43_M	47_M	0.549	0.65
216_L	361_F	0.549	0.65
379_I	394_G	0.548	0.65
122_Q	196_K	0.547	0.65
39_H	452_K	0.546	0.65
225_V	230_A	0.545	0.65
73_T	164_I	0.545	0.65
105_A	116_K	0.543	0.64
179_T	182_G	0.542	0.64
104_S	272_G	0.542	0.64
112_A	272_G	0.541	0.64
229_P	232_I	0.540	0.64
120_D	385_G	0.540	0.64
75_N	90_A	0.540	0.64
176_P	179_T	0.539	0.64
57_V	278_A	0.539	0.64
146_A	149_L	0.539	0.64
368_I	399_I	0.539	0.64
77_A	360_L	0.538	0.64
20_I	431_I	0.538	0.64
28_F	440_A	0.538	0.64
35_L	106_F	0.536	0.63
410_T	413_L	0.536	0.63
55_A	281_V	0.536	0.63
245_A	253_A	0.535	0.63
345_D	352_G	0.535	0.63
140_F	435_L	0.533	0.63
158_G	414_A	0.532	0.63
401_A	404_F	0.532	0.63
360_L	367_T	0.529	0.62
35_L	40_L	0.529	0.62
84_A	338_G	0.528	0.62
104_S	265_N	0.527	0.62
88_P	316_Y	0.527	0.62
5_V	9_N	0.527	0.62
241_A	245_A	0.526	0.62
12_L	420_A	0.525	0.62
53_S	280_E	0.524	0.62
154_F	399_I	0.524	0.62
449_R	452_K	0.523	0.61
446_D	449_R	0.523	0.61
448_E	452_K	0.523	0.61
263_Y	418_G	0.522	0.61
316_Y	319_Q	0.522	0.61
89_G	239_A	0.521	0.61
158_G	411_A	0.521	0.61
265_N	299_T	0.521	0.61
450_Q	453_Q	0.521	0.61
190_I	365_F	0.519	0.61
70_R	109_S	0.519	0.61
380_A	385_G	0.519	0.61
135_L	432_A	0.516	0.60
59_S	287_Q	0.515	0.60
62_A	275_P	0.515	0.60
35_L	289_L	0.514	0.60
164_I	361_F	0.513	0.60
220_I	346_S	0.512	0.60
424_I	428_L	0.512	0.60
107_V	437_A	0.511	0.60
210_A	368_I	0.511	0.60
152_M	399_I	0.510	0.60
79_V	264_S	0.510	0.60
81_T	163_S	0.510	0.60
141_A	147_A	0.509	0.59
155_L	263_Y	0.509	0.59
287_Q	295_V	0.508	0.59
119_Q	122_Q	0.507	0.59
245_A	252_M	0.507	0.59
63_L	67_L	0.506	0.59
232_I	235_I	0.506	0.59
181_C	404_F	0.505	0.59
447_Y	451_K	0.505	0.59
360_L	364_A	0.505	0.59
158_G	410_T	0.505	0.59
17_V	420_A	0.504	0.59
166_A	336_G	0.504	0.59
134_G	137_I	0.504	0.59
165_A	407_T	0.503	0.59
255_S	420_A	0.502	0.58
76_I	340_T	0.502	0.58
413_L	417_L	0.502	0.58
69_G	367_T	0.501	0.58
67_L	297_I	0.501	0.58
122_Q	377_T	0.501	0.58
166_A	176_P	0.500	0.58
105_A	294_S	0.500	0.58

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l1lA	2	0.7831	99.9	0.862	Contact Map
3giaA	1	0.7872	99.8	0.872	Contact Map
4djkA	2	0.7293	99.6	0.895	Contact Map
2xq2A	2	0.8512	98.3	0.942	Contact Map
3dh4A	3	0.8223	98.1	0.944	Contact Map
4wgvA	2	0.75	97.8	0.949	Contact Map
4us3A	1	0.7872	97.1	0.954	Contact Map
2a65A	2	0.814	97	0.955	Contact Map
4xp4A	1	0.8058	96.5	0.958	Contact Map
4c7rA	3	0.8926	95.8	0.96	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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