YRRT - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YRRT - Uncharacterized methyltransferase YrrT

UniProt:	O32029	Sequences: MGREFIPLFEDWAATYDQTVQGLDIQYKEAFRGYDHILDAIVRKSGTHVLEFGPGTGNLTAKLLDAGKTVFGIEPSPAMRKLASDKLSGRTEIVDGDFLTFPEPPFQADTIVSSYAFHHLTDEEKRAAIKQYGKYLHLHDKIVFADTVFENAQAYQQAIDKARSQGFYQLANDLETEHYPTLDALKEMFTAEGFAVRFTQQNDFVWIMEAIKR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	213 (183)
Sequences:	27342 (20763)
Seq/√Len:	1534.8

ECOLI - UBIE UBIG BIOC CMOA SMTA YJHP TAM TEHB YAFE CMOB RLMA YAFS CFA
BACSU - YRRT MENG YCGJ YXBB YBAJ YODH YQEM YRHH YDAC YXJB
HALSA - Q9HR81 Q9HND6 Q9HMT2 Q9HR63 Q9HQ85 Q9HRX3 ARSM Q9HSK6
SULSO - Q7LXN7 Q97ZU8 Q97WN4 Q97WT7 Q97XD7 Q97X57 Q97YX4 Q97WH3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
48_H	69_T	2.923	1.00
77_P	95_D	2.759	1.00
133_G	194_F	2.729	1.00
54_P	72_G	2.728	1.00
126_R	191_A	2.429	1.00
53_G	116_A	2.385	1.00
71_F	108_A	2.382	1.00
109_D	137_H	2.230	1.00
71_F	94_V	2.194	1.00
73_I	96_G	2.176	1.00
83_A	93_I	2.172	1.00
132_Y	142_I	2.171	1.00
50_L	108_A	2.123	1.00
136_L	140_D	2.121	1.00
131_Q	134_K	2.098	1.00
61_A	87_L	2.093	1.00
80_R	93_I	2.082	1.00
60_T	70_V	2.008	1.00
103_E	108_A	1.975	1.00
69_T	92_E	1.965	1.00
52_F	132_Y	1.944	1.00
77_P	81_K	1.940	1.00
44_K	47_T	1.932	1.00
80_R	95_D	1.928	1.00
111_I	132_Y	1.910	1.00
126_R	130_K	1.809	1.00
111_I	136_L	1.749	1.00
82_L	85_D	1.744	1.00
48_H	71_F	1.731	1.00
47_T	110_T	1.711	1.00
126_R	188_M	1.696	1.00
52_F	98_F	1.674	1.00
75_P	97_D	1.662	1.00
131_Q	135_Y	1.649	1.00
10_E	76_S	1.634	1.00
87_L	93_I	1.628	1.00
186_K	190_T	1.602	1.00
74_E	80_R	1.563	1.00
136_L	142_I	1.555	1.00
116_A	120_L	1.539	1.00
61_A	86_K	1.527	1.00
48_H	137_H	1.514	1.00
96_G	102_P	1.496	1.00
10_E	78_A	1.472	1.00
123_E	126_R	1.464	1.00
71_F	92_E	1.456	1.00
48_H	109_D	1.455	1.00
49_V	110_T	1.452	1.00
54_P	60_T	1.447	1.00
78_A	81_K	1.430	1.00
49_V	63_L	1.428	1.00
60_T	72_G	1.424	1.00
123_E	188_M	1.415	1.00
181_T	184_A	1.377	1.00
80_R	84_S	1.373	1.00
187_E	191_A	1.371	1.00
122_D	127_A	1.342	1.00
113_S	116_A	1.321	1.00
62_K	65_D	1.320	1.00
129_I	189_F	1.309	1.00
48_H	108_A	1.308	1.00
105_P	134_K	1.301	1.00
126_R	192_E	1.277	1.00
98_F	116_A	1.268	1.00
118_H	146_D	1.265	1.00
120_L	128_A	1.234	1.00
30_A	33_G	1.200	1.00
94_V	103_E	1.199	1.00
87_L	91_T	1.197	1.00
111_I	135_Y	1.194	1.00
130_K	192_E	1.188	1.00
136_L	194_F	1.176	1.00
47_T	68_K	1.151	1.00
97_D	100_T	1.149	1.00
81_K	84_S	1.148	1.00
64_L	90_R	1.146	1.00
104_P	107_Q	1.129	1.00
127_A	130_K	1.120	1.00
62_K	66_A	1.116	1.00
51_E	54_P	1.114	1.00
98_F	120_L	1.113	1.00
101_F	131_Q	1.110	1.00
48_H	107_Q	1.103	1.00
133_G	192_E	1.097	1.00
61_A	65_D	1.094	1.00
102_P	131_Q	1.082	1.00
72_G	93_I	1.080	1.00
43_R	47_T	1.078	1.00
36_H	40_A	1.065	1.00
27_Y	34_Y	1.034	1.00
115_Y	118_H	1.033	1.00
50_L	111_I	1.021	1.00
17_D	56_T	1.019	1.00
17_D	86_K	1.013	1.00
46_G	68_K	1.007	1.00
101_F	135_Y	0.991	1.00
35_D	66_A	0.988	1.00
31_F	35_D	0.985	1.00
59_L	112_V	0.984	1.00
53_G	113_S	0.981	1.00
187_E	190_T	0.973	1.00
54_P	83_A	0.970	1.00
71_F	103_E	0.970	1.00
128_A	132_Y	0.969	1.00
9_F	119_H	0.957	1.00
36_H	39_D	0.946	1.00
107_Q	137_H	0.933	1.00
103_E	135_Y	0.931	1.00
184_A	187_E	0.928	1.00
76_S	79_M	0.923	1.00
63_L	112_V	0.921	1.00
74_E	79_M	0.921	1.00
59_L	114_S	0.921	1.00
47_T	109_D	0.919	1.00
82_L	86_K	0.919	1.00
73_I	101_F	0.915	1.00
35_D	39_D	0.912	1.00
115_Y	119_H	0.906	1.00
30_A	34_Y	0.898	1.00
29_E	33_G	0.897	1.00
72_G	83_A	0.897	1.00
27_Y	31_F	0.894	1.00
129_I	192_E	0.887	1.00
73_I	94_V	0.884	1.00
110_T	141_K	0.883	1.00
117_F	120_L	0.882	1.00
81_K	85_D	0.877	1.00
27_Y	30_A	0.868	1.00
15_T	18_Q	0.858	1.00
115_Y	145_A	0.846	1.00
27_Y	33_G	0.840	1.00
38_L	66_A	0.836	1.00
28_K	32_R	0.833	1.00
49_V	112_V	0.832	1.00
37_I	143_V	0.830	1.00
119_H	146_D	0.828	1.00
182_L	186_K	0.822	1.00
60_T	93_I	0.817	1.00
31_F	34_Y	0.816	1.00
132_Y	136_L	0.810	1.00
117_F	128_A	0.806	1.00
9_F	118_H	0.804	1.00
127_A	131_Q	0.804	1.00
114_S	145_A	0.803	1.00
14_A	82_L	0.802	1.00
60_T	91_T	0.802	1.00
54_P	80_R	0.801	1.00
118_H	147_T	0.800	1.00
32_R	35_D	0.794	1.00
28_K	31_F	0.793	1.00
49_V	70_V	0.789	1.00
84_S	88_S	0.785	1.00
117_F	129_I	0.775	1.00
100_T	127_A	0.773	1.00
57_G	83_A	0.771	1.00
58_N	86_K	0.767	1.00
56_T	79_M	0.756	1.00
54_P	74_E	0.751	1.00
50_L	135_Y	0.750	1.00
52_F	73_I	0.746	1.00
159_I	163_R	0.744	1.00
130_K	134_K	0.738	1.00
35_D	62_K	0.729	1.00
105_P	131_Q	0.717	1.00
110_T	140_D	0.714	1.00
61_A	64_L	0.712	1.00
33_G	36_H	0.711	1.00
129_I	188_M	0.708	1.00
103_E	107_Q	0.707	1.00
49_V	68_K	0.703	1.00
108_A	135_Y	0.699	1.00
84_S	92_E	0.695	1.00
117_F	144_F	0.689	1.00
99_L	128_A	0.689	1.00
40_A	199_T	0.685	1.00
99_L	120_L	0.684	1.00
57_G	93_I	0.679	1.00
96_G	101_F	0.678	1.00
58_N	62_K	0.678	1.00
113_S	132_Y	0.674	1.00
129_I	185_L	0.673	1.00
48_H	106_F	0.672	1.00
149_F	181_T	0.672	1.00
85_D	88_S	0.669	1.00
64_L	91_T	0.665	1.00
67_G	70_V	0.665	1.00
34_Y	38_L	0.661	1.00
46_G	67_G	0.660	1.00
59_L	63_L	0.659	1.00
78_A	82_L	0.658	1.00
52_F	111_I	0.650	1.00
146_D	185_L	0.649	1.00
142_I	189_F	0.648	1.00
54_P	93_I	0.644	1.00
49_V	67_G	0.641	1.00
60_T	64_L	0.636	1.00
51_E	112_V	0.635	1.00
80_R	83_A	0.635	1.00
100_T	131_Q	0.634	1.00
28_K	34_Y	0.634	1.00
36_H	199_T	0.628	1.00
183_D	186_K	0.627	1.00
48_H	68_K	0.626	1.00
115_Y	147_T	0.624	1.00
188_M	192_E	0.622	1.00
29_E	32_R	0.622	1.00
113_S	144_F	0.621	1.00
105_P	135_Y	0.620	1.00
122_D	126_R	0.617	1.00
89_G	92_E	0.615	1.00
117_F	146_D	0.613	1.00
77_P	84_S	0.611	1.00
61_A	88_S	0.609	1.00
59_L	62_K	0.605	1.00
161_K	164_S	0.604	1.00
107_Q	134_K	0.603	1.00
99_L	122_D	0.602	1.00
10_E	77_P	0.602	1.00
119_H	175_E	0.599	1.00
152_A	155_Y	0.598	1.00
158_A	162_A	0.596	1.00
113_S	120_L	0.594	1.00
56_T	86_K	0.594	1.00
183_D	187_E	0.593	1.00
30_A	37_I	0.591	1.00
53_G	75_P	0.589	1.00
107_Q	135_Y	0.589	1.00
160_D	164_S	0.586	1.00
157_Q	160_D	0.585	1.00
84_S	93_I	0.584	1.00
159_I	162_A	0.584	1.00
99_L	127_A	0.583	1.00
44_K	68_K	0.582	1.00
113_S	142_I	0.580	1.00
144_F	189_F	0.575	1.00
186_K	198_F	0.572	1.00
29_E	34_Y	0.569	1.00
61_A	93_I	0.568	1.00
15_T	19_T	0.567	1.00
147_T	177_E	0.566	1.00
51_E	119_H	0.565	1.00
188_M	191_A	0.565	1.00
39_D	66_A	0.562	1.00
98_F	128_A	0.561	1.00
51_E	70_V	0.561	1.00
14_A	78_A	0.558	1.00
158_A	161_K	0.556	1.00
75_P	95_D	0.556	1.00
47_T	141_K	0.553	1.00
45_S	67_G	0.552	1.00
106_F	134_K	0.549	1.00
134_K	137_H	0.548	1.00
87_L	90_R	0.547	1.00
43_R	46_G	0.543	1.00
41_I	110_T	0.537	1.00
160_D	163_R	0.536	1.00
17_D	20_V	0.532	1.00
75_P	80_R	0.532	1.00
170_L	173_D	0.530	1.00
158_A	163_R	0.528	1.00
50_L	73_I	0.525	1.00
180_P	185_L	0.524	1.00
106_F	137_H	0.523	1.00
37_I	41_I	0.521	1.00
56_T	82_L	0.519	1.00
106_F	138_L	0.518	1.00
142_I	194_F	0.517	1.00
17_D	82_L	0.512	1.00
13_A	78_A	0.512	1.00
75_P	98_F	0.504	1.00
69_T	90_R	0.503	1.00
115_Y	146_D	0.501	1.00
189_F	194_F	0.500	1.00
20_V	23_L	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3hnrA	1	0.8873	100	0.318	Contact Map
4obxA	2	0.9343	100	0.336	Contact Map
3ou2A	1	0.9108	100	0.365	Contact Map
4kdcA	1	0.9343	100	0.368	Contact Map
2o57A	2	0.9484	100	0.369	Contact Map
4pneA	2	0.939	100	0.369	Contact Map
2yqzA	1	0.9437	100	0.378	Contact Map
3dtnA	2	0.9765	100	0.38	Contact Map
4krgA	1	0.9671	100	0.383	Contact Map
4fsdA	1	0.831	100	0.386	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0078 seconds.