GREMLIN Database
YQZC - Uncharacterized protein YqzC
UniProt: O32023 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 154 (150)
Sequences: 278 (272)
Seq/√Len: 22.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
139_V143_M3.6611.00
115_S118_D3.4741.00
123_V149_V3.4071.00
140_K143_M3.3571.00
92_L112_I2.8350.99
122_Y128_Y2.8060.99
98_M106_I2.7910.99
128_Y149_V2.4670.98
105_A116_A2.4470.98
122_Y149_V2.4430.98
144_S147_K2.3440.97
50_L54_K2.1780.96
5_G8_A2.1320.95
4_R10_A2.0880.94
139_V148_I2.0720.94
149_V153_T2.0550.94
113_I116_A1.9630.92
143_M147_K1.9560.92
46_V49_Y1.8950.91
4_R8_A1.8290.89
126_A149_V1.7820.88
104_S153_T1.7760.88
63_Y66_L1.7620.87
137_F152_L1.7570.87
104_S120_N1.6420.83
31_Q40_T1.6040.82
114_S118_D1.5150.78
122_Y126_A1.5140.78
19_V45_D1.4860.76
17_T24_F1.4620.75
100_T120_N1.4460.74
89_T138_K1.3900.71
92_L113_I1.3830.71
92_L95_K1.3460.69
7_Q122_Y1.3340.68
146_K149_V1.3290.68
98_M112_I1.3180.67
9_F13_I1.2810.65
48_N73_S1.2760.65
22_A127_G1.2470.63
90_Y132_I1.2300.62
35_V40_T1.2220.61
50_L55_L1.2030.60
103_V152_L1.2020.60
13_I19_V1.2020.60
96_D137_F1.2000.60
31_Q36_K1.1960.59
3_K7_Q1.1800.58
8_A94_I1.1800.58
124_I129_H1.1790.58
5_G10_A1.1790.58
65_K85_D1.1730.58
8_A13_I1.1650.57
140_K151_T1.1560.57
98_M134_A1.1390.56
33_A37_D1.1330.55
87_V141_S1.1040.53
128_Y150_K1.1020.53
31_Q37_D1.1010.53
127_G147_K1.0960.53
132_I148_I1.0800.52
9_F18_A1.0510.50
37_D40_T1.0450.49
48_N140_K1.0420.49
13_I16_A1.0390.49
105_A109_K1.0350.49
10_A141_S1.0210.48
21_A24_F1.0120.47
93_T137_F0.9960.46
4_R33_A0.9880.45
36_K39_K0.9840.45
101_A120_N0.9770.45
44_Q52_S0.9710.44
8_A100_T0.9690.44
61_D77_D0.9560.43
123_V128_Y0.9450.42
104_S148_I0.9340.42
13_I17_T0.9310.42
12_G16_A0.9300.41
28_D121_D0.9280.41
78_S82_T0.9220.41
95_K125_D0.9210.41
8_A16_A0.9140.40
103_V134_A0.9110.40
114_S145_F0.9110.40
113_I144_S0.9100.40
12_G119_F0.9090.40
24_F143_M0.9070.40
66_L114_S0.9050.40
11_G99_S0.9010.40
26_L143_M0.8970.39
66_L70_K0.8960.39
4_R103_V0.8940.39
95_K98_M0.8940.39
7_Q123_V0.8860.39
32_A36_K0.8850.39
33_A36_K0.8790.38
71_E75_N0.8770.38
94_I97_G0.8700.38
132_I152_L0.8680.37
112_I143_M0.8670.37
94_I113_I0.8660.37
103_V144_S0.8600.37
74_L78_S0.8550.37
102_D113_I0.8530.36
16_A139_V0.8530.36
123_V146_K0.8470.36
53_K73_S0.8390.36
69_S73_S0.8390.36
90_Y109_K0.8380.36
14_I143_M0.8240.35
3_K123_V0.8210.34
88_K141_S0.8180.34
98_M102_D0.8160.34
20_L111_G0.8160.34
10_A98_M0.8110.34
62_E107_L0.8090.34
10_A25_Y0.8090.34
13_I99_S0.8030.33
133_R137_F0.8000.33
72_K78_S0.7990.33
103_V133_R0.7960.33
44_Q112_I0.7840.32
20_L24_F0.7830.32
120_N124_I0.7760.32
119_F145_F0.7700.31
61_D64_Q0.7700.31
46_V53_K0.7690.31
94_I152_L0.7670.31
7_Q11_G0.7660.31
35_V85_D0.7660.31
100_T123_V0.7650.31
9_F16_A0.7590.31
45_D54_K0.7580.31
33_A40_T0.7560.31
146_K150_K0.7540.30
65_K72_K0.7450.30
92_L131_E0.7440.30
6_I151_T0.7430.30
48_N142_D0.7310.29
60_R68_D0.7280.29
11_G17_T0.7260.29
22_A36_K0.7250.29
105_A152_L0.7150.28
40_T152_L0.7140.28
95_K134_A0.7040.28
46_V54_K0.7030.28
98_M103_V0.7030.28
90_Y112_I0.7020.28
5_G33_A0.6950.27
14_I126_A0.6940.27
56_V60_R0.6940.27
123_V145_F0.6900.27
17_T139_V0.6890.27
103_V123_V0.6820.26
57_S61_D0.6800.26
4_R108_E0.6770.26
108_E116_A0.6710.26
139_V151_T0.6670.26
41_V45_D0.6630.25
38_N139_V0.6630.25
9_F20_L0.6630.25
7_Q149_V0.6620.25
9_F92_L0.6560.25
122_Y146_K0.6540.25
31_Q39_K0.6540.25
97_G103_V0.6500.25
53_K72_K0.6470.25
113_I135_G0.6450.25
19_V22_A0.6430.24
3_K16_A0.6430.24
86_K145_F0.6430.24
33_A39_K0.6390.24
104_S145_F0.6320.24
130_K146_K0.6310.24
114_S130_K0.6270.24
109_K132_I0.6260.24
5_G13_I0.6250.24
36_K40_T0.6210.23
7_Q92_L0.6200.23
18_A90_Y0.6190.23
43_E69_S0.6180.23
3_K122_Y0.6180.23
72_K142_D0.6180.23
7_Q93_T0.6160.23
8_A90_Y0.6150.23
34_A79_G0.6060.23
132_I149_V0.6050.23
64_Q125_D0.6010.22
114_S138_K0.5970.22
93_T148_I0.5930.22
20_L99_S0.5920.22
107_L135_G0.5910.22
66_L77_D0.5890.22
61_D65_K0.5820.22
21_A60_R0.5810.21
13_I98_M0.5760.21
138_K145_F0.5750.21
92_L137_F0.5730.21
19_V133_R0.5700.21
32_A35_V0.5650.21
61_D70_K0.5650.21
110_E136_E0.5640.21
96_D104_S0.5610.21
76_N82_T0.5600.21
64_Q113_I0.5570.20
22_A26_L0.5520.20
127_G150_K0.5500.20
92_L106_I0.5440.20
123_V132_I0.5380.20
28_D65_K0.5350.19
43_E68_D0.5350.19
9_F136_E0.5340.19
64_Q134_A0.5300.19
92_L138_K0.5270.19
94_I150_K0.5220.19
10_A143_M0.5220.19
46_V50_L0.5220.19
17_T20_L0.5210.19
6_I37_D0.5200.19
74_L144_S0.5160.19
80_S83_K0.5160.19
72_K75_N0.5100.18
143_M151_T0.5060.18
128_Y146_K0.5000.18
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4iiwA 4 0.4416 99 0.692 Contact Map
2r1fA 4 0.6104 92.8 0.859 Contact Map
4xcmA 2 0.3701 31.2 0.917 Contact Map
4uz3A 1 0.3766 24.1 0.922 Contact Map
3gmxB 2 0.4675 21.8 0.923 Contact Map
3gmvX 1 0.461 19.1 0.925 Contact Map
3d4eA 1 0.4805 18.5 0.926 Contact Map
5a2fA 1 0 16.6 0.927 Contact Map
2nycA 2 0.526 12.6 0.931 Contact Map
4ebyA 1 0.4481 12.4 0.931 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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