GREMLIN Database
YQZF - Uncharacterized protein YqzF
UniProt: O32015 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 78 (76)
Sequences: 186 (137)
Seq/√Len: 15.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
5_L9_I4.0961.00
24_M43_G3.9751.00
24_M47_F3.1860.99
57_L62_L2.5050.95
3_R65_D2.2120.90
50_F54_L2.0230.85
14_G18_A1.9290.82
22_K25_R1.8860.81
60_F70_Q1.8490.79
36_F45_S1.8170.78
53_G64_R1.7380.75
23_L63_Y1.6010.68
62_L66_R1.5470.66
25_R60_F1.5370.65
16_I77_K1.4900.63
27_T33_I1.4860.62
8_L14_G1.4360.60
7_L11_V1.3870.57
15_A61_I1.3680.56
28_L48_I1.3610.55
19_L61_I1.3560.55
33_I58_A1.3420.54
43_G56_V1.3060.52
25_R70_Q1.2730.50
52_I58_A1.2700.50
51_A54_L1.2190.47
10_L64_R1.1970.46
15_A44_L1.1950.46
42_Q45_S1.1800.45
66_R76_R1.1510.43
18_A72_S1.1400.43
41_L45_S1.1400.43
22_K60_F1.0940.40
15_A19_L1.0560.38
47_F54_L1.0490.38
40_W44_L1.0310.37
7_L58_A1.0140.36
4_L27_T0.9910.35
63_Y67_K0.9640.33
31_H35_P0.9590.33
19_L23_L0.9520.33
21_I42_Q0.9470.32
71_V75_F0.9410.32
33_I41_L0.9280.31
4_L73_P0.9090.30
35_P42_Q0.8900.30
17_S75_F0.8840.29
21_I35_P0.8690.29
8_L48_I0.8610.28
48_I71_V0.8540.28
31_H70_Q0.8440.27
3_R14_G0.8410.27
4_L54_L0.8340.27
7_L22_K0.8230.26
40_W45_S0.8180.26
62_L75_F0.8020.26
50_F61_I0.8000.25
12_I49_F0.7990.25
3_R60_F0.7970.25
57_L72_S0.7920.25
33_I55_Y0.7900.25
21_I60_F0.7840.25
7_L61_I0.7820.25
28_L41_L0.7570.24
10_L14_G0.7530.23
8_L49_F0.7520.23
61_I69_N0.7440.23
32_T39_L0.7220.22
21_I25_R0.7190.22
8_L61_I0.7100.22
18_A68_R0.7040.21
19_L28_L0.7030.21
6_A17_S0.6970.21
9_I74_R0.6900.21
19_L36_F0.6710.20
66_R69_N0.6700.20
24_M50_F0.6560.20
10_L57_L0.6500.19
49_F56_V0.6470.19
3_R70_Q0.6460.19
32_T35_P0.6350.19
19_L33_I0.6260.19
22_K42_Q0.6200.18
57_L61_I0.6190.18
39_L52_I0.6120.18
62_L69_N0.6080.18
23_L29_F0.6070.18
52_I55_Y0.6060.18
62_L71_V0.6050.18
16_I48_I0.6040.18
60_F63_Y0.6020.18
11_V14_G0.5900.17
11_V21_I0.5870.17
16_I33_I0.5850.17
10_L27_T0.5830.17
22_K36_F0.5780.17
41_L73_P0.5720.17
15_A73_P0.5650.17
20_G46_G0.5530.16
38_A47_F0.5480.16
30_G42_Q0.5440.16
10_L40_W0.5420.16
71_V77_K0.5410.16
4_L72_S0.5320.16
65_D68_R0.5250.15
2_S48_I0.5240.15
10_L56_V0.5230.15
51_A55_Y0.5190.15
43_G72_S0.5140.15
25_R63_Y0.5140.15
60_F65_D0.5130.15
62_L72_S0.5080.15
40_W75_F0.5060.15
3_R53_G0.5000.15
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2kluA 1 0.5641 27.1 0.909 Contact Map
2yevB 1 0.7179 13 0.922 Contact Map
4bbjA 1 0.8718 11.6 0.923 Contact Map
2mfrA 1 0.6667 6.8 0.931 Contact Map
4a2nB 1 0.8846 5.2 0.934 Contact Map
2m20A 2 0.5385 5.1 0.935 Contact Map
3j08A 2 0.7821 4.4 0.937 Contact Map
1lnqA 6 0.6538 4.1 0.938 Contact Map
4j7cI 2 0.9872 4.1 0.938 Contact Map
4tkrA 2 0.9487 3.8 0.939 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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