YOKG - BACSU - GREMLIN Contacts

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YOKG - SPBc2 prophage-derived pesticidal crystal protein-like YokG

UniProt:	O32000	Sequences: MKYDNLLDATSQYGPQDLLLGRDGLISTGYWAKTQANILTGTGLPVSNDEMKTYLNLPKNVEIPQDFQKLYDVYNEYKKLCDWWLEKLLSCVNKMANDIYNVGSTTSELINEALQPGLRAITTASNDQDRQDAIQDFHEVCLILMRELDENQQSMKDVQNLLNSFLQGGNNFIGVTQLNNSFEEVMTYLDSQYNDESEIHDLLNIFMQFKKLLGESLEEHEINEKVKFSSELGPLIGYIVSEMLEYSDVQMFKQRIDNFQNLNGVDAQVALVVKVLSLFHGINIDLHNVIYQAERSLEFIEQTEGNWHSIANQFYSLAQGFENEDINKLSTDLDNAAATWEAVANKAKEFVTNSYQG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	357 (318)
Sequences:	255 (210)
Seq/√Len:	11.8

BACSU - YOKG

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
81_C	84_W	4.593	1.00
34_T	84_W	3.738	0.99
80_L	172_F	3.361	0.98
51_M	84_W	3.225	0.97
246_Y	250_Q	3.144	0.96
84_W	307_W	2.919	0.95
243_M	247_S	2.830	0.94
235_L	239_I	2.826	0.94
307_W	340_W	2.724	0.92
35_Q	51_M	2.631	0.91
224_E	227_K	2.570	0.90
301_E	304_E	2.561	0.90
41_G	81_C	2.554	0.89
169_G	206_F	2.549	0.89
81_C	169_G	2.529	0.89
31_W	35_Q	2.526	0.89
329_L	333_L	2.419	0.87
214_G	218_E	2.369	0.85
134_I	321_F	2.366	0.85
31_W	51_M	2.305	0.84
252_F	256_I	2.292	0.83
81_C	202_L	2.277	0.83
237_G	240_V	2.244	0.82
220_H	224_E	2.171	0.80
84_W	278_L	2.168	0.80
203_L	273_V	2.155	0.79
24_G	27_S	2.120	0.78
233_G	239_I	2.112	0.78
207_M	211_K	2.068	0.76
48_N	52_K	2.013	0.74
146_R	319_Q	1.992	0.74
84_W	169_G	1.949	0.72
181_S	185_V	1.939	0.71
48_N	51_M	1.911	0.70
219_E	310_I	1.889	0.69
213_L	262_L	1.878	0.69
20_L	24_G	1.865	0.68
51_M	55_L	1.835	0.67
44_L	307_W	1.815	0.66
77_Y	296_S	1.802	0.66
27_S	51_M	1.798	0.65
230_S	240_V	1.778	0.64
317_L	329_L	1.767	0.64
230_S	245_E	1.764	0.64
310_I	347_A	1.762	0.64
165_F	310_I	1.748	0.63
213_L	256_I	1.745	0.63
98_D	154_S	1.733	0.62
81_C	88_L	1.690	0.60
227_K	237_G	1.688	0.60
111_N	114_L	1.685	0.60
316_S	347_A	1.677	0.60
169_G	307_W	1.676	0.60
154_S	216_S	1.675	0.60
314_F	317_L	1.673	0.60
103_G	336_A	1.671	0.59
88_L	162_L	1.664	0.59
26_I	47_S	1.644	0.58
69_K	272_V	1.627	0.57
31_W	38_I	1.613	0.57
333_L	336_A	1.607	0.56
70_L	115_Q	1.571	0.55
241_S	245_E	1.562	0.54
220_H	245_E	1.552	0.54
24_G	35_Q	1.541	0.53
102_V	300_I	1.536	0.53
28_T	47_S	1.524	0.52
37_N	45_P	1.517	0.52
234_P	238_Y	1.487	0.50
65_Q	317_L	1.486	0.50
226_V	240_V	1.480	0.50
279_F	286_L	1.477	0.50
114_L	117_G	1.477	0.50
225_K	229_S	1.438	0.48
89_L	329_L	1.429	0.48
39_L	43_G	1.409	0.47
148_L	307_W	1.408	0.47
51_M	350_F	1.400	0.46
253_K	257_D	1.390	0.46
237_G	248_D	1.384	0.45
33_K	53_T	1.370	0.45
155_M	228_F	1.357	0.44
44_L	340_W	1.353	0.44
197_S	315_Y	1.337	0.43
80_L	162_L	1.335	0.43
233_G	340_W	1.327	0.43
140_V	228_F	1.320	0.42
158_V	324_E	1.320	0.42
101_N	253_K	1.320	0.42
214_G	257_D	1.316	0.42
301_E	305_G	1.312	0.42
220_H	256_I	1.301	0.41
222_I	226_V	1.288	0.41
231_E	234_P	1.287	0.41
293_A	300_I	1.285	0.41
63_I	137_F	1.283	0.40
228_F	241_S	1.276	0.40
227_K	248_D	1.275	0.40
160_N	167_Q	1.270	0.40
279_F	321_F	1.267	0.40
317_L	350_F	1.263	0.39
145_M	315_Y	1.262	0.39
84_W	88_L	1.261	0.39
252_F	295_R	1.259	0.39
96_A	102_V	1.245	0.39
97_N	351_V	1.237	0.38
137_F	350_F	1.212	0.37
114_L	144_L	1.207	0.37
205_I	342_A	1.203	0.37
84_W	151_N	1.202	0.37
37_N	165_F	1.199	0.36
245_E	249_V	1.195	0.36
84_W	317_L	1.193	0.36
47_S	50_E	1.192	0.36
34_T	261_N	1.187	0.36
216_S	219_E	1.186	0.36
236_I	241_S	1.180	0.36
260_Q	263_N	1.176	0.35
234_P	282_I	1.175	0.35
240_V	248_D	1.170	0.35
27_S	84_W	1.168	0.35
265_V	269_V	1.166	0.35
296_S	340_W	1.151	0.34
288_N	292_Q	1.148	0.34
123_T	211_K	1.143	0.34
94_K	243_M	1.141	0.34
27_S	30_Y	1.140	0.34
26_I	71_Y	1.135	0.34
165_F	205_I	1.135	0.34
185_V	243_M	1.124	0.33
141_C	202_L	1.108	0.32
165_F	206_F	1.107	0.32
213_L	220_H	1.105	0.32
27_S	333_L	1.100	0.32
34_T	330_S	1.093	0.32
37_N	80_L	1.092	0.32
245_E	248_D	1.090	0.32
76_E	93_N	1.089	0.32
23_D	31_W	1.089	0.32
25_L	56_N	1.084	0.31
91_C	125_S	1.084	0.31
264_G	268_Q	1.081	0.31
118_L	122_T	1.072	0.31
290_I	301_E	1.068	0.31
27_S	317_L	1.058	0.30
50_E	162_L	1.053	0.30
70_L	74_Y	1.051	0.30
224_E	249_V	1.047	0.30
102_V	106_T	1.043	0.30
189_L	333_L	1.043	0.30
25_L	59_K	1.029	0.29
103_G	112_E	1.025	0.29
204_N	207_M	1.023	0.29
143_I	268_Q	1.014	0.28
102_V	329_L	1.011	0.28
269_V	336_A	1.010	0.28
51_M	130_R	1.010	0.28
80_L	224_E	1.006	0.28
190_D	257_D	1.001	0.28
236_I	312_N	0.999	0.28
95_M	321_F	0.998	0.28
24_G	31_W	0.997	0.28
150_E	268_Q	0.996	0.28
204_N	273_V	0.996	0.28
66_D	118_L	0.992	0.28
311_A	344_A	0.988	0.27
252_F	303_T	0.984	0.27
79_K	250_Q	0.977	0.27
80_L	220_H	0.974	0.27
298_E	327_N	0.974	0.27
121_I	329_L	0.970	0.27
244_L	247_S	0.970	0.27
254_Q	265_V	0.967	0.27
138_H	322_E	0.966	0.27
156_K	318_A	0.965	0.26
36_A	39_L	0.955	0.26
213_L	279_F	0.952	0.26
261_N	322_E	0.946	0.26
234_P	243_M	0.944	0.26
142_L	194_N	0.941	0.26
120_A	160_N	0.938	0.25
202_L	248_D	0.936	0.25
165_F	213_L	0.935	0.25
96_A	287_H	0.934	0.25
92_V	317_L	0.932	0.25
153_Q	237_G	0.929	0.25
27_S	329_L	0.928	0.25
38_I	42_T	0.925	0.25
48_N	56_N	0.922	0.25
335_N	349_E	0.922	0.25
46_V	279_F	0.919	0.25
72_D	153_Q	0.916	0.25
74_Y	228_F	0.916	0.25
84_W	350_F	0.916	0.25
111_N	324_E	0.909	0.24
165_F	192_Q	0.906	0.24
99_I	145_M	0.902	0.24
51_M	67_F	0.901	0.24
237_G	241_S	0.900	0.24
49_D	345_N	0.897	0.24
34_T	51_M	0.897	0.24
133_A	148_L	0.896	0.24
133_A	144_L	0.895	0.24
305_G	313_Q	0.894	0.24
166_L	299_F	0.890	0.24
34_T	81_C	0.889	0.24
93_N	314_F	0.888	0.24
41_G	77_Y	0.887	0.24
25_L	52_K	0.886	0.24
106_T	216_S	0.877	0.23
231_E	238_Y	0.874	0.23
35_Q	89_L	0.874	0.23
191_S	263_N	0.873	0.23
166_L	294_E	0.872	0.23
74_Y	307_W	0.868	0.23
37_N	220_H	0.862	0.23
35_Q	54_Y	0.860	0.23
118_L	350_F	0.859	0.23
38_I	60_N	0.859	0.23
95_M	98_D	0.859	0.23
29_G	33_K	0.856	0.22
224_E	256_I	0.856	0.22
51_M	81_C	0.855	0.22
51_M	307_W	0.852	0.22
276_L	321_F	0.851	0.22
78_K	224_E	0.847	0.22
169_G	336_A	0.839	0.22
215_E	286_L	0.838	0.22
317_L	343_V	0.836	0.22
264_G	316_S	0.834	0.22
27_S	43_G	0.828	0.22
48_N	264_G	0.828	0.22
202_L	226_V	0.827	0.21
80_L	83_W	0.826	0.21
153_Q	157_D	0.823	0.21
31_W	41_G	0.821	0.21
254_Q	257_D	0.821	0.21
168_G	310_I	0.818	0.21
84_W	106_T	0.811	0.21
41_G	51_M	0.809	0.21
237_G	244_L	0.805	0.21
296_S	351_V	0.805	0.21
78_K	281_G	0.804	0.21
93_N	236_I	0.803	0.21
294_E	297_L	0.802	0.21
124_A	310_I	0.800	0.21
118_L	236_I	0.796	0.20
206_F	265_V	0.794	0.20
34_T	99_I	0.792	0.20
141_C	206_F	0.784	0.20
182_F	185_V	0.782	0.20
232_L	237_G	0.780	0.20
179_N	205_I	0.776	0.20
141_C	345_N	0.775	0.20
27_S	133_A	0.773	0.20
57_L	73_V	0.769	0.20
324_E	350_F	0.767	0.20
111_N	321_F	0.767	0.20
68_Q	293_A	0.767	0.20
287_H	309_S	0.766	0.20
32_A	43_G	0.766	0.20
115_Q	197_S	0.760	0.19
137_F	310_I	0.760	0.19
315_Y	318_A	0.759	0.19
80_L	300_I	0.758	0.19
20_L	27_S	0.758	0.19
41_G	84_W	0.756	0.19
32_A	74_Y	0.753	0.19
165_F	261_N	0.752	0.19
142_L	266_D	0.750	0.19
166_L	242_E	0.749	0.19
145_M	287_H	0.748	0.19
239_I	243_M	0.746	0.19
233_G	307_W	0.744	0.19
150_E	322_E	0.743	0.19
161_L	255_R	0.743	0.19
144_L	263_N	0.741	0.19
144_L	336_A	0.740	0.19
63_I	236_I	0.738	0.19
263_N	341_E	0.736	0.19
228_F	242_E	0.736	0.19
313_Q	329_L	0.736	0.19
70_L	307_W	0.731	0.18
227_K	253_K	0.731	0.18
114_L	118_L	0.730	0.18
130_R	321_F	0.729	0.18
155_M	311_A	0.723	0.18
96_A	343_V	0.723	0.18
100_Y	217_L	0.722	0.18
194_N	347_A	0.720	0.18
271_L	289_V	0.719	0.18
34_T	265_V	0.719	0.18
141_C	278_L	0.719	0.18
102_V	262_L	0.718	0.18
254_Q	342_A	0.716	0.18
95_M	102_V	0.716	0.18
249_V	303_T	0.714	0.18
81_C	245_E	0.714	0.18
97_N	153_Q	0.714	0.18
44_L	74_Y	0.714	0.18
129_D	133_A	0.712	0.18
33_K	46_V	0.711	0.18
153_Q	205_I	0.710	0.18
194_N	316_S	0.708	0.18
93_N	240_V	0.707	0.18
192_Q	313_Q	0.704	0.18
90_S	102_V	0.703	0.18
26_I	333_L	0.701	0.18
121_I	124_A	0.700	0.18
40_T	43_G	0.700	0.18
76_E	286_L	0.699	0.18
249_V	347_A	0.698	0.17
80_L	335_N	0.698	0.17
287_H	316_S	0.697	0.17
31_W	350_F	0.696	0.17
167_Q	319_Q	0.691	0.17
123_T	143_I	0.690	0.17
31_W	307_W	0.688	0.17
156_K	270_A	0.686	0.17
220_H	249_V	0.686	0.17
169_G	228_F	0.686	0.17
162_L	255_R	0.685	0.17
27_S	351_V	0.683	0.17
103_G	206_F	0.681	0.17
236_I	239_I	0.671	0.17
70_L	90_S	0.671	0.17
257_D	260_Q	0.670	0.17
300_I	313_Q	0.669	0.17
291_Y	333_L	0.667	0.17
310_I	350_F	0.667	0.17
91_C	280_H	0.665	0.17
96_A	310_I	0.663	0.16
206_F	213_L	0.662	0.16
112_E	123_T	0.662	0.16
112_E	227_K	0.661	0.16
243_M	252_F	0.660	0.16
31_W	299_F	0.660	0.16
149_D	267_A	0.660	0.16
311_A	334_D	0.659	0.16
274_K	314_F	0.658	0.16
81_C	246_Y	0.657	0.16
26_I	269_V	0.657	0.16
72_D	101_N	0.656	0.16
84_W	210_K	0.651	0.16
112_E	261_N	0.650	0.16
231_E	312_N	0.648	0.16
28_T	54_Y	0.648	0.16
67_F	84_W	0.646	0.16
161_L	246_Y	0.646	0.16
24_G	185_V	0.645	0.16
64_P	68_Q	0.644	0.16
297_L	305_G	0.642	0.16
215_E	218_E	0.640	0.16
204_N	327_N	0.637	0.16
30_Y	33_K	0.636	0.16
35_Q	336_A	0.634	0.16
95_M	203_L	0.634	0.16
73_V	210_K	0.632	0.16
243_M	302_Q	0.630	0.16
285_D	310_I	0.630	0.16
315_Y	319_Q	0.628	0.16
100_Y	348_K	0.627	0.16
315_Y	334_D	0.625	0.15
231_E	242_E	0.623	0.15
223_N	226_V	0.620	0.15
35_Q	333_L	0.620	0.15
61_V	272_V	0.620	0.15
88_L	140_V	0.617	0.15
136_D	156_K	0.616	0.15
235_L	312_N	0.616	0.15
80_L	157_D	0.616	0.15
186_M	301_E	0.613	0.15
217_L	221_E	0.612	0.15
109_L	157_D	0.609	0.15
21_G	188_Y	0.608	0.15
236_I	240_V	0.605	0.15
37_N	331_T	0.599	0.15
89_L	350_F	0.598	0.15
297_L	318_A	0.597	0.15
31_W	80_L	0.595	0.15
114_L	310_I	0.595	0.15
81_C	307_W	0.592	0.15
88_L	170_N	0.591	0.15
67_F	350_F	0.590	0.15
202_L	210_K	0.589	0.15
51_M	89_L	0.589	0.15
32_A	48_N	0.586	0.14
73_V	89_L	0.585	0.14
155_M	296_S	0.582	0.14
123_T	342_A	0.581	0.14
95_M	350_F	0.580	0.14
129_D	321_F	0.580	0.14
231_E	249_V	0.578	0.14
186_M	269_V	0.578	0.14
125_S	187_T	0.577	0.14
27_S	32_A	0.576	0.14
234_P	242_E	0.575	0.14
263_N	349_E	0.574	0.14
131_Q	134_I	0.574	0.14
214_G	260_Q	0.573	0.14
20_L	38_I	0.572	0.14
20_L	96_A	0.571	0.14
133_A	336_A	0.570	0.14
147_E	260_Q	0.569	0.14
83_W	186_M	0.567	0.14
72_D	257_D	0.567	0.14
207_M	231_E	0.567	0.14
118_L	137_F	0.567	0.14
42_T	166_L	0.564	0.14
299_F	305_G	0.559	0.14
342_A	349_E	0.559	0.14
24_G	133_A	0.559	0.14
278_L	293_A	0.559	0.14
69_K	207_M	0.558	0.14
31_W	34_T	0.558	0.14
118_L	223_N	0.557	0.14
92_V	220_H	0.554	0.14
110_I	310_I	0.553	0.14
37_N	248_D	0.552	0.14
262_L	269_V	0.552	0.14
230_S	235_L	0.549	0.14
113_A	116_P	0.549	0.14
44_L	329_L	0.548	0.14
51_M	85_L	0.548	0.14
25_L	273_V	0.546	0.14
222_I	247_S	0.545	0.14
153_Q	160_N	0.544	0.13
61_V	275_V	0.544	0.13
217_L	223_N	0.542	0.13
45_P	202_L	0.541	0.13
220_H	242_E	0.541	0.13
146_R	323_N	0.539	0.13
150_E	211_K	0.539	0.13
25_L	28_T	0.538	0.13
153_Q	254_Q	0.538	0.13
34_T	53_T	0.538	0.13
138_H	339_T	0.537	0.13
276_L	302_Q	0.536	0.13
70_L	242_E	0.536	0.13
35_Q	148_L	0.532	0.13
203_L	280_H	0.530	0.13
149_D	263_N	0.530	0.13
144_L	158_V	0.528	0.13
40_T	162_L	0.528	0.13
41_G	210_K	0.528	0.13
29_G	267_A	0.528	0.13
123_T	329_L	0.527	0.13
164_S	168_G	0.527	0.13
294_E	319_Q	0.527	0.13
112_E	347_A	0.525	0.13
88_L	276_L	0.524	0.13
172_F	210_K	0.522	0.13
31_W	74_Y	0.521	0.13
88_L	299_F	0.521	0.13
152_Q	282_I	0.520	0.13
51_M	54_Y	0.519	0.13
137_F	284_I	0.518	0.13
93_N	313_Q	0.517	0.13
162_L	210_K	0.515	0.13
74_Y	299_F	0.514	0.13
78_K	310_I	0.514	0.13
67_F	339_T	0.514	0.13
59_K	167_Q	0.511	0.13
77_Y	347_A	0.509	0.13
252_F	258_N	0.508	0.13
94_K	218_E	0.508	0.13
74_Y	103_G	0.508	0.13
206_F	263_N	0.508	0.13
134_I	205_I	0.505	0.13
317_L	342_A	0.504	0.13
149_D	338_A	0.504	0.13
243_M	246_Y	0.502	0.13
22_R	48_N	0.502	0.13
221_E	228_F	0.501	0.13
102_V	162_L	0.501	0.13
57_L	158_V	0.500	0.12
204_N	208_Q	0.500	0.12

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4k1pA	1	0.888	100	0.467	Contact Map
2nrjA	1	0.8824	100	0.48	Contact Map
4linA	5	0.6527	90.8	0.928	Contact Map
4uxvA	1	0.8347	81	0.938	Contact Map
4cgkA	3	0.549	68.6	0.944	Contact Map
3vkgA	2	0.8515	62.3	0.946	Contact Map
4rsiB	1	0.5154	43.3	0.952	Contact Map
4q4gX	1	0.0112	37.8	0.954	Contact Map
2a01A	1	0.6387	35.8	0.954	Contact Map
1i84S	2	0.3866	35.2	0.954	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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