SUNS - BACSU - GREMLIN Contacts

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SUNS - SPBc2 prophage-derived glycosyltransferase SunS

UniProt:	O31986	Sequences: MKLSDIYLELKKGYADSLLYSDLSLLVNIMEYEKDIDVMSIQSLVAGYEKSDTPTITCGIIVYNESKRIKKCLNSVKDDFNEIIVLDSYSTDDTVDIIKCDFPDVEIKYEKWKNDFSYARNKIIEYATSEWIYFIDADNLYSKENKGKIAKVARVLEFFSIDCVVSPYIEEYTGHLYSDTRRMFRLNGKVKFHGKVHEEPMNYNHSLPFNFIVNLKVYHNGYNPSENNIKSKTRRNINLTEEMLRLEPENPKWLFFFGRELHLLDKDEEAIDYLKKSINNYKKFNDQRHFIDALVLLCTLLLQRNNYVDLTLYLDILETEYPRCVDVDYFRSAILLVDMQNKLTSLSNMIDEALTDERYSAINTTKDHFKRILISLNIQLENWERVKEISGEIKNDNMKKEIKQYLANSLHNIEHVLKGIEV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	422 (332)
Sequences:	623 (586)
Seq/√Len:	32.1

BACSU - SUNS

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
95_V	109_Y	5.390	1.00
306_N	309_D	4.500	1.00
64_N	91_T	4.273	1.00
66_S	93_D	4.006	1.00
113_K	118_Y	3.800	1.00
115_D	118_Y	3.779	1.00
266_K	269_E	3.753	1.00
69_I	98_I	3.743	1.00
93_D	96_D	3.505	1.00
122_K	126_Y	3.468	1.00
59_G	127_A	3.415	1.00
70_K	100_C	3.222	1.00
382_N	385_R	3.027	1.00
58_C	80_F	2.925	1.00
70_K	74_N	2.884	1.00
110_E	113_K	2.864	1.00
252_K	256_F	2.817	1.00
219_H	222_Y	2.717	1.00
374_I	390_S	2.674	1.00
58_C	76_V	2.642	1.00
342_K	345_S	2.637	1.00
140_L	220_N	2.350	0.99
215_L	219_H	2.327	0.99
254_L	273_Y	2.308	0.99
127_A	132_I	2.289	0.99
332_S	350_I	2.286	0.99
124_I	184_F	2.272	0.99
370_K	389_I	2.229	0.99
259_R	274_L	2.190	0.99
198_E	236_N	2.147	0.99
122_K	125_E	2.115	0.98
339_M	343_L	2.079	0.98
366_K	369_F	2.060	0.98
114_N	242_E	2.011	0.98
310_L	334_I	1.989	0.98
57_T	82_E	1.972	0.97
76_V	135_I	1.969	0.97
55_T	129_S	1.957	0.97
146_K	150_A	1.953	0.97
258_G	274_L	1.951	0.97
60_I	72_C	1.838	0.96
114_N	238_N	1.837	0.96
74_N	102_F	1.826	0.96
108_K	126_Y	1.825	0.96
271_I	304_R	1.797	0.96
71_K	140_L	1.762	0.95
98_I	107_I	1.759	0.95
82_E	106_E	1.742	0.95
123_I	134_F	1.731	0.94
87_D	90_S	1.730	0.94
377_N	385_R	1.723	0.94
195_K	246_L	1.719	0.94
182_R	197_H	1.706	0.94
62_V	137_A	1.702	0.94
237_I	257_F	1.685	0.94
162_D	168_Y	1.682	0.94
352_E	355_T	1.677	0.93
61_I	119_A	1.671	0.93
135_I	217_V	1.665	0.93
55_T	130_E	1.653	0.93
335_L	345_S	1.627	0.92
301_L	309_D	1.610	0.92
165_V	168_Y	1.604	0.92
58_C	135_I	1.597	0.92
57_T	129_S	1.578	0.91
110_E	122_K	1.578	0.91
162_D	166_S	1.576	0.91
62_V	73_L	1.566	0.91
58_C	81_N	1.548	0.90
62_V	94_T	1.545	0.90
269_E	272_D	1.542	0.90
60_I	85_V	1.541	0.90
107_I	112_W	1.536	0.90
171_E	174_G	1.533	0.90
262_H	267_D	1.531	0.90
65_E	137_A	1.527	0.90
163_C	167_P	1.512	0.89
247_E	250_N	1.507	0.89
298_C	314_L	1.507	0.89
162_D	165_V	1.502	0.89
98_I	105_V	1.501	0.89
261_L	269_E	1.487	0.88
271_I	297_L	1.477	0.88
221_G	232_K	1.465	0.88
61_I	65_E	1.464	0.88
87_D	92_D	1.449	0.87
385_R	388_E	1.445	0.87
68_R	71_K	1.437	0.87
347_S	373_L	1.417	0.86
347_S	377_N	1.415	0.86
182_R	192_F	1.404	0.85
192_F	197_H	1.390	0.85
69_I	73_L	1.369	0.84
346_L	376_L	1.354	0.83
90_S	94_T	1.352	0.83
62_V	85_V	1.352	0.83
164_V	167_P	1.340	0.83
195_K	243_M	1.340	0.83
174_G	179_D	1.319	0.82
69_I	94_T	1.307	0.81
69_I	97_I	1.306	0.81
153_A	156_L	1.299	0.81
378_I	390_S	1.293	0.80
164_V	168_Y	1.291	0.80
95_V	99_K	1.286	0.80
133_Y	183_M	1.282	0.80
268_E	304_R	1.282	0.80
354_L	373_L	1.275	0.79
63_Y	88_S	1.273	0.79
315_D	331_R	1.271	0.79
61_I	123_I	1.269	0.79
196_V	240_T	1.266	0.79
59_G	132_I	1.253	0.78
199_E	252_K	1.250	0.78
257_F	261_L	1.236	0.77
318_E	328_D	1.225	0.76
62_V	69_I	1.225	0.76
311_T	331_R	1.224	0.76
258_G	313_Y	1.207	0.75
270_A	300_L	1.197	0.75
215_L	221_G	1.191	0.74
182_R	236_N	1.188	0.74
120_R	136_D	1.181	0.74
86_L	110_E	1.176	0.73
110_E	118_Y	1.172	0.73
105_V	112_W	1.167	0.73
170_E	174_G	1.159	0.72
88_S	136_D	1.149	0.72
163_C	166_S	1.137	0.71
180_T	192_F	1.137	0.71
88_S	197_H	1.136	0.71
333_A	350_I	1.115	0.69
58_C	83_I	1.102	0.68
299_T	330_F	1.091	0.68
56_I	59_G	1.090	0.68
57_T	127_A	1.090	0.68
232_K	235_R	1.081	0.67
114_N	195_K	1.070	0.66
58_C	72_C	1.069	0.66
325_V	353_A	1.069	0.66
162_D	167_P	1.061	0.65
57_T	128_T	1.057	0.65
65_E	88_S	1.050	0.65
86_L	122_K	1.050	0.65
112_W	182_R	1.048	0.64
272_D	276_K	1.037	0.64
332_S	353_A	1.030	0.63
82_E	128_T	1.030	0.63
378_I	386_V	1.030	0.63
112_W	115_D	1.026	0.63
61_I	88_S	1.026	0.63
199_E	256_F	1.024	0.63
254_L	276_K	1.024	0.63
134_F	192_F	1.015	0.62
57_T	84_I	1.011	0.62
60_I	80_F	1.006	0.61
65_E	116_F	1.004	0.61
259_R	263_L	0.978	0.59
88_S	116_F	0.974	0.59
277_S	293_A	0.966	0.58
256_F	259_R	0.964	0.58
83_I	237_I	0.961	0.58
124_I	127_A	0.953	0.57
124_I	132_I	0.953	0.57
222_Y	232_K	0.949	0.57
86_L	123_I	0.948	0.57
163_C	168_Y	0.947	0.56
152_V	156_L	0.945	0.56
267_D	303_Q	0.944	0.56
196_V	236_N	0.939	0.56
275_K	309_D	0.938	0.56
366_K	370_K	0.934	0.55
136_D	197_H	0.933	0.55
309_D	312_L	0.928	0.55
70_K	96_D	0.920	0.54
146_K	152_V	0.916	0.54
184_F	192_F	0.912	0.54
55_T	58_C	0.908	0.53
275_K	279_N	0.904	0.53
271_I	275_K	0.896	0.52
252_K	258_G	0.895	0.52
234_R	264_L	0.887	0.52
132_I	184_F	0.885	0.51
248_P	322_P	0.884	0.51
233_T	260_E	0.883	0.51
87_D	94_T	0.878	0.51
142_S	218_Y	0.875	0.51
110_E	119_A	0.873	0.50
72_C	75_S	0.871	0.50
61_I	137_A	0.865	0.50
102_F	105_V	0.862	0.50
141_Y	217_V	0.861	0.49
311_T	334_I	0.859	0.49
88_S	139_N	0.858	0.49
328_D	349_M	0.858	0.49
371_R	378_I	0.850	0.49
373_L	377_N	0.848	0.48
81_N	124_I	0.848	0.48
96_D	100_C	0.844	0.48
301_L	306_N	0.842	0.48
297_L	301_L	0.840	0.48
116_F	120_R	0.840	0.48
193_H	201_M	0.835	0.47
103_P	107_I	0.831	0.47
60_I	123_I	0.830	0.47
125_E	191_K	0.830	0.47
68_R	140_L	0.829	0.47
60_I	137_A	0.825	0.46
72_C	133_Y	0.823	0.46
162_D	169_I	0.823	0.46
74_N	77_K	0.821	0.46
301_L	367_D	0.819	0.46
103_P	108_K	0.813	0.46
142_S	145_N	0.813	0.46
123_I	126_Y	0.811	0.45
234_R	238_N	0.810	0.45
255_F	259_R	0.810	0.45
73_L	103_P	0.809	0.45
85_V	103_P	0.808	0.45
358_R	361_A	0.803	0.45
254_L	277_S	0.798	0.44
164_V	169_I	0.797	0.44
131_W	185_R	0.796	0.44
236_N	260_E	0.793	0.44
237_I	241_E	0.790	0.44
274_L	297_L	0.785	0.43
394_K	397_N	0.784	0.43
329_Y	372_I	0.784	0.43
120_R	123_I	0.781	0.43
105_V	110_E	0.778	0.43
350_I	369_F	0.777	0.43
331_R	335_L	0.769	0.42
288_R	375_S	0.766	0.42
351_D	385_R	0.765	0.42
56_I	195_K	0.765	0.42
161_I	164_V	0.762	0.41
69_I	114_N	0.762	0.41
104_D	107_I	0.760	0.41
240_T	257_F	0.759	0.41
241_E	257_F	0.758	0.41
72_C	80_F	0.758	0.41
372_I	375_S	0.757	0.41
288_R	324_C	0.755	0.41
65_E	94_T	0.752	0.41
182_R	235_R	0.752	0.41
99_K	109_Y	0.751	0.41
343_L	376_L	0.748	0.40
72_C	346_L	0.747	0.40
65_E	197_H	0.746	0.40
252_K	260_E	0.745	0.40
196_V	239_L	0.745	0.40
338_D	342_K	0.744	0.40
196_V	264_L	0.741	0.40
59_G	350_I	0.739	0.40
275_K	297_L	0.739	0.40
60_I	73_L	0.734	0.39
93_D	97_I	0.732	0.39
263_L	274_L	0.730	0.39
92_D	136_D	0.729	0.39
195_K	239_L	0.727	0.39
388_E	392_E	0.725	0.38
300_L	304_R	0.723	0.38
69_I	137_A	0.722	0.38
146_K	156_L	0.721	0.38
271_I	300_L	0.718	0.38
109_Y	126_Y	0.717	0.38
317_L	327_V	0.716	0.38
289_H	294_L	0.714	0.38
252_K	372_I	0.712	0.37
105_V	108_K	0.712	0.37
139_N	221_G	0.711	0.37
88_S	120_R	0.711	0.37
65_E	136_D	0.711	0.37
133_Y	141_Y	0.707	0.37
88_S	115_D	0.705	0.37
332_S	373_L	0.704	0.37
245_R	276_K	0.702	0.37
329_Y	369_F	0.701	0.37
165_V	169_I	0.698	0.36
371_R	374_I	0.692	0.36
89_Y	92_D	0.692	0.36
327_V	331_R	0.692	0.36
274_L	390_S	0.688	0.36
97_I	102_F	0.688	0.36
134_F	180_T	0.687	0.36
66_S	335_L	0.686	0.35
99_K	148_K	0.684	0.35
166_S	169_I	0.683	0.35
351_D	389_I	0.683	0.35
197_H	235_R	0.682	0.35
89_Y	94_T	0.681	0.35
243_M	246_L	0.677	0.35
252_K	263_L	0.676	0.35
148_K	151_K	0.676	0.35
190_V	199_E	0.675	0.35
392_E	395_N	0.674	0.35
227_N	230_K	0.669	0.34
252_K	259_R	0.667	0.34
270_A	298_C	0.667	0.34
88_S	112_W	0.665	0.34
276_K	280_N	0.664	0.34
61_I	116_F	0.664	0.34
216_K	220_N	0.659	0.33
374_I	378_I	0.657	0.33
282_K	319_T	0.656	0.33
85_V	95_V	0.656	0.33
70_K	104_D	0.654	0.33
313_Y	316_I	0.652	0.33
143_K	147_G	0.652	0.33
179_D	345_S	0.651	0.33
349_M	353_A	0.651	0.33
199_E	222_Y	0.650	0.33
161_I	225_S	0.650	0.33
199_E	263_L	0.647	0.33
184_F	200_P	0.645	0.32
314_L	327_V	0.644	0.32
256_F	263_L	0.640	0.32
64_N	280_N	0.639	0.32
183_M	188_G	0.639	0.32
259_R	296_L	0.636	0.32
194_G	198_E	0.634	0.32
200_P	292_D	0.632	0.32
119_A	122_K	0.632	0.32
367_D	370_K	0.630	0.31
351_D	377_N	0.629	0.31
241_E	261_L	0.629	0.31
84_I	127_A	0.628	0.31
210_N	374_I	0.627	0.31
159_F	166_S	0.627	0.31
58_C	85_V	0.627	0.31
56_I	147_G	0.621	0.31
317_L	322_P	0.621	0.31
76_V	80_F	0.620	0.31
154_R	157_E	0.620	0.31
82_E	86_L	0.620	0.31
114_N	118_Y	0.619	0.31
244_L	253_W	0.617	0.30
89_Y	136_D	0.616	0.30
267_D	300_L	0.614	0.30
271_I	317_L	0.614	0.30
237_I	260_E	0.614	0.30
274_L	296_L	0.612	0.30
346_L	350_I	0.611	0.30
60_I	105_V	0.611	0.30
256_F	324_C	0.609	0.30
159_F	165_V	0.609	0.30
69_I	136_D	0.608	0.30
80_F	83_I	0.608	0.30
81_N	130_E	0.607	0.30
185_R	252_K	0.606	0.30
115_D	195_K	0.604	0.30
182_R	196_V	0.604	0.30
337_V	342_K	0.604	0.30
76_V	120_R	0.603	0.30
84_I	334_I	0.603	0.30
60_I	135_I	0.603	0.30
347_S	351_D	0.602	0.29
187_N	307_Y	0.601	0.29
268_E	303_Q	0.600	0.29
220_N	223_N	0.600	0.29
84_I	105_V	0.599	0.29
84_I	107_I	0.597	0.29
353_A	356_D	0.597	0.29
255_F	296_L	0.594	0.29
241_E	245_R	0.594	0.29
253_W	274_L	0.594	0.29
68_R	220_N	0.592	0.29
159_F	168_Y	0.592	0.29
245_R	279_N	0.591	0.29
97_I	190_V	0.591	0.29
197_H	200_P	0.590	0.29
240_T	261_L	0.588	0.28
86_L	108_K	0.587	0.28
326_D	329_Y	0.585	0.28
98_I	112_W	0.585	0.28
84_I	108_K	0.583	0.28
56_I	79_D	0.583	0.28
58_C	133_Y	0.583	0.28
262_H	299_T	0.583	0.28
110_E	236_N	0.582	0.28
197_H	219_H	0.580	0.28
256_F	353_A	0.579	0.28
256_F	372_I	0.579	0.28
253_W	259_R	0.579	0.28
83_I	103_P	0.578	0.28
139_N	222_Y	0.577	0.28
184_F	296_L	0.576	0.28
323_R	349_M	0.576	0.28
371_R	390_S	0.576	0.28
358_R	362_I	0.575	0.28
261_L	266_K	0.574	0.28
76_V	217_V	0.572	0.27
69_I	78_D	0.572	0.27
111_K	125_E	0.572	0.27
260_E	298_C	0.571	0.27
236_N	239_L	0.570	0.27
182_R	194_G	0.569	0.27
58_C	61_I	0.568	0.27
332_S	349_M	0.568	0.27
159_F	163_C	0.567	0.27
283_K	286_D	0.566	0.27
73_L	112_W	0.565	0.27
253_W	260_E	0.565	0.27
88_S	137_A	0.562	0.27
258_G	277_S	0.562	0.27
350_I	367_D	0.560	0.27
266_K	344_T	0.559	0.27
108_K	122_K	0.559	0.27
120_R	140_L	0.558	0.27
82_E	119_A	0.558	0.27
199_E	235_R	0.557	0.26
85_V	345_S	0.556	0.26
231_S	234_R	0.555	0.26
246_L	354_L	0.554	0.26
269_E	273_Y	0.551	0.26
76_V	81_N	0.550	0.26
57_T	350_I	0.550	0.26
86_L	106_E	0.550	0.26
195_K	242_E	0.550	0.26
56_I	308_V	0.548	0.26
59_G	192_F	0.547	0.26
263_L	297_L	0.546	0.26
117_S	356_D	0.545	0.26
134_F	256_F	0.544	0.26
94_T	116_F	0.543	0.26
90_S	137_A	0.542	0.26
134_F	296_L	0.542	0.26
115_D	136_D	0.541	0.25
240_T	253_W	0.541	0.25
163_C	169_I	0.541	0.25
219_H	223_N	0.540	0.25
331_R	349_M	0.540	0.25
70_K	142_S	0.540	0.25
182_R	198_E	0.540	0.25
253_W	256_F	0.538	0.25
298_C	310_L	0.538	0.25
297_L	313_Y	0.537	0.25
116_F	235_R	0.536	0.25
134_F	198_E	0.535	0.25
243_M	253_W	0.534	0.25
69_I	83_I	0.534	0.25
72_C	85_V	0.534	0.25
241_E	269_E	0.534	0.25
227_N	256_F	0.534	0.25
232_K	236_N	0.533	0.25
115_D	120_R	0.533	0.25
199_E	277_S	0.533	0.25
240_T	243_M	0.530	0.25
61_I	136_D	0.529	0.25
190_V	289_H	0.528	0.25
69_I	102_F	0.526	0.25
386_V	390_S	0.525	0.24
180_T	183_M	0.525	0.24
109_Y	122_K	0.524	0.24
173_T	312_L	0.523	0.24
56_I	143_K	0.522	0.24
67_K	99_K	0.521	0.24
140_L	374_I	0.521	0.24
120_R	139_N	0.519	0.24
184_F	274_L	0.519	0.24
332_S	346_L	0.518	0.24
152_V	155_V	0.518	0.24
200_P	204_N	0.518	0.24
244_L	254_L	0.517	0.24
165_V	172_Y	0.516	0.24
112_W	136_D	0.516	0.24
73_L	270_A	0.516	0.24
259_R	292_D	0.516	0.24
187_N	192_F	0.515	0.24
311_T	335_L	0.515	0.24
381_E	384_E	0.515	0.24
123_I	127_A	0.514	0.24
149_I	152_V	0.512	0.24
60_I	88_S	0.512	0.24
213_V	217_V	0.512	0.24
130_E	293_A	0.511	0.24
119_A	200_P	0.511	0.24
94_T	147_G	0.511	0.24
115_D	386_V	0.511	0.24
194_G	197_H	0.511	0.24
241_E	354_L	0.510	0.24
337_V	343_L	0.509	0.24
302_L	337_V	0.509	0.24
215_L	222_Y	0.508	0.23
265_D	383_W	0.507	0.23
309_D	345_S	0.506	0.23
371_R	375_S	0.506	0.23
112_W	137_A	0.505	0.23
76_V	141_Y	0.505	0.23
170_E	173_T	0.504	0.23
181_R	259_R	0.504	0.23
263_L	295_V	0.503	0.23
374_I	386_V	0.503	0.23
90_S	138_D	0.503	0.23
347_S	380_L	0.502	0.23
199_E	232_K	0.502	0.23
244_L	319_T	0.501	0.23
85_V	104_D	0.500	0.23

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1qg8A	1	0.4455	99.9	0.769	Contact Map
3bcvA	2	0.3483	99.9	0.78	Contact Map
2z86A	2	0.6114	99.9	0.782	Contact Map
3l7iA	4	0.1754	99.9	0.783	Contact Map
3f1yA	2	0.6114	99.9	0.796	Contact Map
2nxvA	4	0.4787	99.9	0.806	Contact Map
3q7aA	1	0.5237	99.9	0.807	Contact Map
3ckjA	2	0.5735	99.9	0.808	Contact Map
4l9pA	1	0.5379	99.8	0.809	Contact Map
1xhbA	1	0.7891	99.8	0.811	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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