GREMLIN Database
YORL - Probable DNA polymerase YorL
UniProt: O31902 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 1305 (1058)
Sequences: 4448 (2673)
Seq/√Len: 82.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
761_E765_K6.3651.00
477_K480_K6.1121.00
646_I664_Y5.8381.00
8_T39_I5.6611.00
188_H228_G5.1181.00
107_K148_G4.2901.00
758_R761_E4.2221.00
513_C523_S4.1121.00
104_M303_M3.9751.00
1124_D1163_K3.9051.00
28_T31_K3.7901.00
922_D995_S3.7891.00
355_K359_D3.7881.00
735_K740_L3.6241.00
793_E815_L3.5281.00
681_A692_F3.4631.00
412_N416_D3.4291.00
104_M202_K3.4001.00
347_D355_K3.3111.00
28_T32_M3.2391.00
732_T746_E3.2331.00
818_K822_E3.2191.00
363_E442_D3.1951.00
679_E682_G3.0211.00
409_E484_A2.9971.00
666_H669_V2.9801.00
827_D831_N2.9541.00
960_N963_Y2.9441.00
358_E379_L2.9421.00
806_E810_K2.9141.00
137_K193_W2.9031.00
814_E818_K2.8931.00
347_D351_R2.8441.00
29_A37_L2.8041.00
432_A469_I2.7861.00
169_K186_K2.7711.00
735_K746_E2.7621.00
296_N299_L2.7051.00
389_L437_V2.6841.00
365_L378_I2.6831.00
354_L383_N2.6211.00
638_I864_L2.5981.00
541_K573_L2.5901.00
366_K369_E2.5891.00
161_V203_F2.5311.00
639_R643_D2.5281.00
789_F812_V2.5161.00
821_K827_D2.5111.00
53_R621_A2.5081.00
234_I300_I2.4871.00
675_D679_E2.4731.00
676_K679_E2.4411.00
1147_L1165_D2.4071.00
26_L55_V2.3811.00
101_M152_A2.3581.00
262_E515_G2.3561.00
813_E831_N2.3541.00
682_G707_K2.3431.00
559_I570_E2.3361.00
462_S792_K2.3341.00
762_R785_D2.3191.00
1096_K1144_M2.3151.00
681_A686_I2.3011.00
350_D396_L2.3001.00
969_F993_F2.2991.00
354_L358_E2.2921.00
246_D574_K2.2641.00
348_E351_R2.2621.00
379_L383_N2.2491.00
28_T243_R2.2391.00
679_E683_N2.2231.00
144_S193_W2.2171.00
397_N461_K2.2061.00
354_L396_L2.1931.00
244_P273_Q2.1881.00
372_R380_N2.1841.00
917_K938_S2.1751.00
677_L867_R2.1711.00
703_K731_D2.1691.00
692_F712_A2.1581.00
638_I667_P2.1401.00
153_T234_I2.1261.00
919_D940_L2.1251.00
69_K305_E2.1221.00
676_K867_R2.1171.00
186_K189_E2.1171.00
27_K61_K2.1141.00
685_E914_R2.1131.00
835_N839_K2.1051.00
387_G397_N2.0871.00
725_G730_V2.0691.00
445_Q668_D2.0511.00
594_D598_K2.0421.00
383_N387_G2.0211.00
283_D295_K2.0151.00
358_E383_N2.0001.00
76_A101_M1.9931.00
9_D21_S1.9921.00
1051_K1054_K1.9821.00
46_S603_M1.9801.00
998_N1049_S1.9781.00
413_I481_I1.9691.00
817_F831_N1.9601.00
831_N835_N1.9591.00
193_W197_V1.9531.00
483_K487_E1.9411.00
205_I226_A1.9411.00
759_V825_T1.9411.00
1003_M1050_K1.9391.00
763_H785_D1.9301.00
283_D294_I1.9261.00
508_A575_I1.9231.00
350_D401_S1.9221.00
788_N823_I1.9141.00
955_H959_L1.9131.00
353_L386_L1.9111.00
202_K303_M1.9091.00
106_P110_E1.9031.00
223_I233_M1.8971.00
498_A582_R1.8941.00
813_E835_N1.8901.00
191_I231_L1.8891.00
248_A567_N1.8831.00
195_I231_L1.8751.00
37_L276_D1.8741.00
759_V823_I1.8661.00
263_V517_G1.8651.00
951_D955_H1.8641.00
679_E707_K1.8601.00
154_T203_F1.8551.00
1091_L1147_L1.8511.00
260_E264_D1.8391.00
784_K791_I1.8361.00
699_Q703_K1.8311.00
54_T61_K1.8291.00
557_E561_E1.8271.00
726_E730_V1.8231.00
750_Y761_E1.8181.00
725_G728_Q1.8181.00
1113_I1126_L1.8171.00
105_D149_H1.8151.00
5_H75_E1.8041.00
413_I417_D1.8021.00
813_E839_K1.7901.00
661_Y868_Y1.7851.00
408_R412_N1.7831.00
118_Q145_K1.7791.00
359_D363_E1.7751.00
20_N242_L1.7701.00
288_E291_D1.7671.00
224_D228_G1.7581.00
29_A276_D1.7571.00
1068_D1072_S1.7461.00
485_L629_L1.7451.00
960_N972_R1.7411.00
636_D640_V1.7391.00
760_M780_M1.7351.00
910_N914_R1.7331.00
965_D1041_F1.7321.00
74_N116_S1.7321.00
713_A852_L1.7311.00
357_I382_I1.7291.00
509_L530_I1.7201.00
1104_N1110_K1.7191.00
452_D779_Q1.7141.00
423_S480_K1.7121.00
682_G705_K1.7101.00
191_I229_Y1.7091.00
817_F821_K1.7091.00
23_K54_T1.7091.00
273_Q277_E1.7081.00
38_A102_L1.7061.00
1201_V1210_A1.7041.00
727_E730_V1.7031.00
510_Q524_Q1.7011.00
365_L436_L1.6991.00
1148_S1161_F1.6971.00
692_F716_N1.6951.00
309_I312_E1.6931.00
398_Q464_P1.6921.00
298_M302_E1.6881.00
1000_Q1004_K1.6881.00
728_Q731_D1.6811.00
206_E236_T1.6661.00
364_K445_Q1.6601.00
9_D578_L1.6481.00
633_E880_V1.6441.00
106_P306_D1.6391.00
40_T102_L1.6341.00
239_A276_D1.6321.00
204_F299_L1.6231.00
192_T229_Y1.6231.00
988_I1002_I1.6191.00
786_I833_V1.6161.00
988_I1006_F1.6161.00
188_H192_T1.6111.00
510_Q527_S1.6101.00
112_L150_I1.6061.00
646_I662_N1.6061.00
556_K560_R1.6041.00
356_L359_D1.6001.00
771_A780_M1.5901.00
144_S197_V1.5881.00
1149_Y1164_Y1.5851.00
279_H283_D1.5781.00
559_I569_K1.5771.00
1124_D1146_S1.5751.00
796_Y799_K1.5681.00
524_Q528_G1.5661.00
1049_S1055_T1.5631.00
371_T378_I1.5621.00
1005_A1045_K1.5621.00
739_N746_E1.5591.00
727_E731_D1.5581.00
987_L992_C1.5431.00
233_M293_A1.5411.00
874_N911_I1.5330.99
700_S715_T1.5330.99
237_T277_E1.5300.99
806_E843_G1.5240.99
103_A306_D1.5230.99
349_Q402_S1.5220.99
476_S640_V1.5210.99
968_D972_R1.5200.99
223_I290_I1.5130.99
1146_S1163_K1.5030.99
667_P670_I1.5020.99
736_Y746_E1.5000.99
536_S542_H1.4970.99
725_G851_T1.4950.99
209_P216_I1.4930.99
677_L866_Y1.4880.99
32_M278_I1.4860.99
35_K298_M1.4850.99
100_L155_A1.4820.99
118_Q122_N1.4810.99
716_N855_S1.4780.99
874_N914_R1.4760.99
566_P570_E1.4730.99
361_F440_L1.4720.99
409_E488_R1.4690.99
252_A571_T1.4680.99
750_Y765_K1.4640.99
541_K545_Y1.4630.99
812_V815_L1.4620.99
21_S24_E1.4610.99
417_D420_G1.4610.99
709_L856_I1.4560.99
232_Q299_L1.4550.99
36_G301_G1.4480.99
829_L832_Y1.4470.99
360_G440_L1.4440.99
50_D618_D1.4370.99
423_S477_K1.4320.99
396_L401_S1.4290.99
661_Y872_Y1.4280.99
808_V812_V1.4280.99
685_E913_Q1.4280.99
725_G731_D1.4200.99
160_E190_F1.4200.99
42_H98_H1.4160.99
320_L323_F1.4100.99
244_P272_V1.4100.99
144_S196_E1.4060.99
559_I566_P1.4050.99
195_I201_D1.4050.99
261_R517_G1.3950.99
726_E731_D1.3840.99
781_V797_L1.3820.99
378_I449_M1.3800.99
262_E516_L1.3780.99
358_E361_F1.3750.99
226_A231_L1.3740.99
688_D877_C1.3730.99
704_V734_V1.3710.99
736_Y739_N1.3680.99
98_H156_C1.3630.99
117_S602_M1.3600.99
165_L225_I1.3550.99
617_G805_K1.3530.99
356_L408_R1.3500.99
30_V61_K1.3500.99
411_I471_I1.3470.99
736_Y748_T1.3400.99
687_M698_H1.3370.99
76_A135_V1.3360.99
188_H229_Y1.3360.99
164_H169_K1.3330.99
287_K291_D1.3310.99
382_I440_L1.3300.99
820_G825_T1.3270.99
277_E285_I1.3250.99
878_L904_V1.3240.99
83_E122_N1.3210.98
672_Y856_I1.3200.98
725_G729_P1.3180.98
1098_F1114_T1.3150.98
518_I568_L1.3150.98
989_K1058_S1.3110.98
925_K935_N1.3080.98
634_A873_W1.3030.98
45_L109_H1.3020.98
204_F303_M1.3020.98
114_I598_K1.3010.98
522_I564_Q1.3010.98
676_K866_Y1.3000.98
497_I588_G1.2980.98
707_K737_K1.2950.98
680_M866_Y1.2910.98
726_E851_T1.2890.98
209_P288_E1.2880.98
48_H72_L1.2880.98
533_E536_S1.2880.98
382_I436_L1.2820.98
788_N819_K1.2790.98
717_S851_T1.2780.98
558_F562_V1.2740.98
154_T205_I1.2690.98
252_A512_A1.2690.98
919_D938_S1.2680.98
54_T60_K1.2670.98
970_I1009_L1.2650.98
452_D766_D1.2640.98
299_L303_M1.2620.98
709_L713_A1.2590.98
165_L221_K1.2570.98
641_T876_A1.2570.98
513_C568_L1.2520.98
153_T206_E1.2520.98
1104_N1128_I1.2510.98
946_M990_G1.2480.98
23_K60_K1.2480.98
646_I665_I1.2470.98
1078_F1093_I1.2450.98
686_I692_F1.2440.98
371_T377_K1.2430.98
251_Q262_E1.2420.98
32_M276_D1.2390.98
299_L302_E1.2390.98
766_D848_L1.2270.98
645_L864_L1.2260.98
662_N665_I1.2240.97
520_N524_Q1.2190.97
927_D931_R1.2180.97
1110_K1127_L1.2150.97
26_L54_T1.2140.97
667_P860_Q1.2100.97
361_F382_I1.2100.97
226_A229_Y1.2090.97
671_E859_L1.2090.97
925_K962_P1.2090.97
104_M108_G1.2070.97
107_K149_H1.2060.97
76_A116_S1.2020.97
37_L55_V1.2000.97
808_V811_E1.1980.97
275_V281_R1.1970.97
1072_S1118_P1.1970.97
633_E881_N1.1970.97
1096_K1113_I1.1960.97
320_L351_R1.1940.97
25_L239_A1.1940.97
553_K556_K1.1920.97
716_N851_T1.1910.97
51_A70_L1.1900.97
969_F984_V1.1860.97
195_I230_D1.1860.97
26_L61_K1.1840.97
191_I225_I1.1820.97
205_I231_L1.1810.97
1092_V1115_T1.1780.97
44_V120_W1.1730.97
207_L290_I1.1730.97
511_T580_N1.1720.97
446_I852_L1.1720.97
378_I436_L1.1710.97
957_I969_F1.1710.97
45_L113_R1.1710.97
52_I310_E1.1710.97
353_L441_L1.1710.97
17_D42_H1.1650.97
417_D487_E1.1650.97
789_F815_L1.1630.97
554_P557_E1.1590.97
160_E194_C1.1520.96
185_L189_E1.1520.96
384_V387_G1.1500.96
479_Q483_K1.1490.96
424_L474_E1.1490.96
72_L109_H1.1490.96
524_Q527_S1.1480.96
245_E574_K1.1480.96
42_H156_C1.1470.96
791_I799_K1.1450.96
826_S829_L1.1450.96
499_T586_A1.1430.96
103_A150_I1.1410.96
251_Q267_Y1.1400.96
949_I983_Q1.1380.96
215_Q219_N1.1370.96
83_E141_E1.1360.96
928_F955_H1.1350.96
1133_K1165_D1.1340.96
701_V715_T1.1330.96
71_I102_L1.1320.96
59_K307_Y1.1310.96
674_D867_R1.1300.96
195_I199_G1.1300.96
615_N618_D1.1290.96
1000_Q1047_Y1.1230.96
447_N450_Q1.1220.96
730_V851_T1.1200.96
77_Y98_H1.1190.96
696_V719_M1.1180.96
1056_L1067_D1.1180.96
641_T864_L1.1160.96
810_K839_K1.1160.96
43_E77_Y1.1160.96
199_G202_K1.1130.96
34_Y279_H1.1120.96
555_I569_K1.1110.96
962_P972_R1.1090.96
925_K940_L1.1070.95
7_H17_D1.1040.95
953_V978_I1.1030.95
967_N1042_F1.1020.95
207_L293_A1.1000.95
1108_N1129_K1.1000.95
544_F569_K1.0990.95
726_E729_P1.0970.95
1113_I1124_D1.0970.95
759_V786_I1.0970.95
516_L571_T1.0950.95
357_I436_L1.0920.95
352_Y356_L1.0920.95
492_K595_E1.0920.95
104_M204_F1.0920.95
361_F370_L1.0910.95
118_Q146_D1.0910.95
17_D156_C1.0910.95
960_N973_M1.0890.95
727_E851_T1.0880.95
569_K573_L1.0880.95
411_I425_V1.0870.95
321_P352_Y1.0850.95
498_A603_M1.0810.95
23_K61_K1.0810.95
921_P946_M1.0800.95
716_N858_A1.0800.95
20_N25_L1.0790.95
542_H545_Y1.0770.95
221_K224_D1.0750.95
21_S578_L1.0740.95
692_F855_S1.0740.95
204_F296_N1.0740.95
350_D354_L1.0740.95
432_A438_N1.0710.95
347_D352_Y1.0690.95
751_G832_Y1.0690.95
874_N907_A1.0670.94
168_I217_Y1.0660.94
991_G1067_D1.0660.94
194_C203_F1.0660.94
152_A198_F1.0650.94
137_K194_C1.0640.94
685_E910_N1.0630.94
998_N1001_E1.0620.94
5_H206_E1.0610.94
136_K142_L1.0600.94
121_E610_Y1.0590.94
681_A716_N1.0580.94
188_H225_I1.0580.94
484_A488_R1.0570.94
1137_G1168_D1.0570.94
786_I825_T1.0560.94
1130_E1134_Y1.0540.94
154_T159_S1.0540.94
226_A232_Q1.0510.94
354_L386_L1.0510.94
779_Q785_D1.0500.94
923_I969_F1.0500.94
115_L150_I1.0490.94
921_P943_L1.0470.94
164_H190_F1.0460.94
1130_E1163_K1.0450.94
118_Q142_L1.0440.94
227_N292_Q1.0430.94
777_V801_I1.0420.94
728_Q851_T1.0420.94
32_M279_H1.0410.94
199_G231_L1.0410.94
410_I485_L1.0390.94
1094_S1124_D1.0390.94
235_V293_A1.0380.94
105_D108_G1.0380.94
475_G634_A1.0370.94
790_D793_E1.0350.94
1198_I1202_L1.0350.94
954_I957_I1.0340.93
1099_K1113_I1.0340.93
306_D309_I1.0330.93
151_I204_F1.0320.93
687_M907_A1.0320.93
361_F378_I1.0300.93
1075_N1118_P1.0280.93
909_G913_Q1.0270.93
417_D480_K1.0270.93
759_V785_D1.0270.93
956_H960_N1.0270.93
364_K442_D1.0240.93
278_I281_R1.0230.93
539_P542_H1.0210.93
796_Y812_V1.0210.93
307_Y310_E1.0200.93
670_I860_Q1.0200.93
114_I597_T1.0190.93
52_I308_T1.0170.93
638_I642_L1.0160.93
151_I303_M1.0160.93
164_H186_K1.0160.93
22_V54_T1.0160.93
638_I860_Q1.0150.93
320_L347_D1.0150.93
642_L665_I1.0140.93
1153_D1156_L1.0110.93
874_N939_I1.0110.93
1181_P1213_L1.0080.93
101_M150_I1.0080.93
17_D98_H1.0070.93
384_V456_W1.0050.92
928_F944_K1.0020.92
786_I820_G1.0020.92
505_S576_E1.0000.92
352_Y408_R0.9990.92
930_F941_F0.9980.92
739_N747_M0.9970.92
710_L766_D0.9970.92
46_S120_W0.9960.92
6_C25_L0.9950.92
1195_T1198_I0.9940.92
412_N442_D0.9910.92
1101_E1109_I0.9900.92
163_I166_L0.9900.92
732_T770_V0.9890.92
1110_K1125_C0.9870.92
137_K160_E0.9870.92
817_F827_D0.9870.92
1071_A1078_F0.9870.92
1102_Y1112_W0.9860.92
147_P197_V0.9850.92
454_P849_L0.9840.92
828_N832_Y0.9840.92
1143_E1169_F0.9820.92
24_E27_K0.9810.92
7_H75_E0.9790.91
121_E604_K0.9790.91
192_T196_E0.9780.91
105_D148_G0.9780.91
678_W859_L0.9770.91
156_C240_H0.9760.91
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751_G829_L0.6250.63
988_I1003_M0.6250.63
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227_N230_D0.6210.62
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115_L118_Q0.6120.61
1001_E1047_Y0.6120.61
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256_A511_T0.6110.61
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241_Y274_N0.6080.60
1192_Y1195_T0.6080.60
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954_I958_V0.6060.60
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229_Y232_Q0.5440.52
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539_P543_C0.5430.52
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315_I318_M0.5340.51
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83_E136_K0.5330.51
642_L864_L0.5330.51
49_L618_D0.5330.51
255_N262_E0.5320.51
270_C274_N0.5320.51
122_N141_E0.5320.51
994_D998_N0.5320.51
787_A838_F0.5320.51
119_A133_P0.5310.50
218_C221_K0.5310.50
736_Y749_R0.5310.50
190_F194_C0.5310.50
759_V762_R0.5310.50
1192_Y1196_R0.5310.50
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508_A573_L0.5300.50
817_F830_L0.5290.50
594_D599_S0.5290.50
563_E567_N0.5290.50
1202_L1205_D0.5290.50
362_E367_T0.5290.50
362_E370_L0.5290.50
965_D996_F0.5280.50
806_E839_K0.5280.50
511_T514_R0.5280.50
321_P351_R0.5270.50
147_P199_G0.5270.50
533_E546_G0.5260.50
462_S799_K0.5260.50
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378_I439_Y0.5220.49
491_D610_Y0.5210.49
157_L214_E0.5210.49
401_S506_K0.5210.49
460_H465_D0.5210.49
796_Y808_V0.5210.49
404_Y437_V0.5200.49
287_K290_I0.5200.49
124_F134_T0.5200.49
714_V773_T0.5200.49
731_D770_V0.5200.49
35_K68_F0.5190.49
362_E379_L0.5190.49
802_A866_Y0.5180.49
148_G202_K0.5170.49
500_F615_N0.5170.49
557_E560_R0.5170.49
27_K30_V0.5160.48
209_P219_N0.5160.48
600_N614_F0.5160.48
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571_T574_K0.5150.48
361_F366_K0.5150.48
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282_M285_I0.5150.48
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871_L936_N0.5140.48
295_K298_M0.5140.48
793_E797_L0.5140.48
36_G71_I0.5140.48
779_Q873_W0.5140.48
748_T751_G0.5130.48
1065_L1070_S0.5130.48
925_K995_S0.5130.48
1179_G1211_I0.5130.48
809_L838_F0.5130.48
634_A861_E0.5130.48
424_L475_G0.5130.48
195_I232_Q0.5120.48
8_T14_R0.5120.48
241_Y269_A0.5120.48
361_F365_L0.5120.48
36_G298_M0.5120.48
195_I203_F0.5110.48
102_L304_I0.5110.48
746_E749_R0.5110.48
156_C215_Q0.5110.48
76_A119_A0.5110.48
473_T629_L0.5100.48
7_H236_T0.5100.48
1105_K1127_L0.5100.48
1184_W1205_D0.5100.48
154_T236_T0.5100.48
480_K483_K0.5100.48
496_Q589_V0.5100.48
978_I983_Q0.5090.48
531_P543_C0.5090.48
970_I988_I0.5090.48
1093_I1145_D0.5080.47
15_L581_K0.5080.47
677_L858_A0.5080.47
614_F622_M0.5070.47
493_R592_F0.5070.47
404_Y432_A0.5070.47
712_A855_S0.5070.47
465_D809_L0.5060.47
420_G747_M0.5060.47
149_H155_A0.5050.47
949_I953_V0.5050.47
1153_D1157_S0.5050.47
366_K370_L0.5050.47
137_K190_F0.5050.47
1099_K1111_S0.5040.47
838_F843_G0.5040.47
493_R594_D0.5040.47
956_H978_I0.5040.47
736_Y747_M0.5040.47
704_V730_V0.5040.47
323_F347_D0.5040.47
282_M294_I0.5040.47
8_T29_A0.5030.47
731_D735_K0.5030.47
295_K675_D0.5030.47
50_D733_Y0.5030.47
1001_E1046_D0.5030.47
245_E1072_S0.5020.47
789_F800_S0.5020.47
417_D423_S0.5020.47
77_Y240_H0.5020.47
587_A617_G0.5020.47
678_W692_F0.5010.47
700_S728_Q0.5010.47
30_V33_E0.5010.47
485_L591_I0.5010.47
264_D268_E0.5000.46
866_Y870_P0.5000.46
733_Y739_N0.5000.46
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2hnhA 1 0.6774 100 0.337 Contact Map
3f2bA 1 0.6031 100 0.471 Contact Map
4gx8A 1 0.2023 100 0.861 Contact Map
3e38A 4 0.213 100 0.902 Contact Map
3dcpA 1 0.1808 100 0.941 Contact Map
2yxoA 3 0.1847 99.9 0.945 Contact Map
3b0xA 1 0.1739 99.9 0.952 Contact Map
2w9mA 1 0.1732 99.9 0.953 Contact Map
3o0fA 1 0.177 99.8 0.955 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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