YOJJ - BACSU - GREMLIN Contacts

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YOJJ - Uncharacterized protein YojJ

UniProt:	O31854	Sequences: MKAMRYEQISENAFKGKIQVYLEQILGDASLILKTLHEKDQCLLCELDDLGHVFQDMQGIASSFYLQSYIEEFTPAFIELAKAIKALSEHKHGALIVIERADPVERFIQKGTSLHAEISSSLIESIFFPGNPLHDGALLVRENKLVSAANVLPLTTKEVDIHLGTRHRAALGMSGYTDALVLVVSEETGKMSFAKDGVLYPLISPRT	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	207 (180)
Sequences:	1542 (1010)
Seq/√Len:	75.3

BACSU - YOJJ YBBP

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
170_A	183_V	6.683	1.00
123_I	138_L	5.592	1.00
115_H	144_K	4.892	1.00
173_M	181_V	4.718	1.00
99_E	141_R	4.062	1.00
147_S	150_N	3.544	1.00
97_V	173_M	3.245	1.00
85_K	191_M	3.180	1.00
125_S	131_N	3.168	1.00
137_A	152_L	3.062	1.00
107_F	139_L	2.942	1.00
174_S	181_V	2.809	1.00
80_L	98_I	2.757	1.00
76_A	118_I	2.752	1.00
92_H	129_P	2.683	1.00
194_A	199_L	2.465	1.00
86_A	124_E	2.446	1.00
97_V	152_L	2.429	1.00
98_I	182_L	2.314	1.00
154_L	165_T	2.264	1.00
40_D	44_L	2.258	1.00
155_T	159_V	2.208	1.00
116_A	122_L	2.085	1.00
84_I	182_L	2.041	1.00
97_V	181_V	1.980	1.00
141_R	146_V	1.846	1.00
163_L	201_P	1.739	1.00
83_A	87_L	1.671	1.00
118_I	140_V	1.623	1.00
128_F	131_N	1.615	1.00
159_V	171_L	1.598	0.99
107_F	177_T	1.581	0.99
155_T	171_L	1.566	0.99
151_V	165_T	1.564	0.99
84_I	96_I	1.563	0.99
29_A	32_I	1.555	0.99
88_S	188_T	1.487	0.99
94_A	184_V	1.487	0.99
79_E	120_S	1.411	0.99
96_I	140_V	1.408	0.99
79_E	82_K	1.360	0.98
84_I	88_S	1.346	0.98
162_H	201_P	1.330	0.98
82_K	120_S	1.328	0.98
155_T	175_G	1.317	0.98
190_K	202_L	1.298	0.98
84_I	191_M	1.288	0.98
100_R	180_L	1.263	0.97
117_E	144_K	1.258	0.97
40_D	43_L	1.225	0.97
92_H	128_F	1.198	0.96
125_S	130_G	1.187	0.96
171_L	199_L	1.185	0.96
174_S	197_G	1.178	0.96
113_S	146_V	1.147	0.95
124_E	128_F	1.120	0.95
84_I	87_L	1.114	0.94
97_V	137_A	1.082	0.93
107_F	176_Y	1.077	0.93
183_V	194_A	1.071	0.93
50_L	60_I	1.066	0.93
38_E	49_D	1.040	0.92
181_V	194_A	1.038	0.92
163_L	199_L	1.034	0.92
107_F	121_S	1.023	0.91
138_L	148_A	1.019	0.91
152_L	165_T	1.008	0.91
47_L	58_Q	1.003	0.91
142_E	193_F	1.001	0.91
35_T	39_K	1.001	0.91
80_L	182_L	0.999	0.90
55_Q	106_R	0.998	0.90
138_L	145_L	0.997	0.90
125_S	128_F	0.988	0.90
48_D	55_Q	0.981	0.90
112_T	121_S	0.977	0.89
112_T	149_A	0.976	0.89
85_K	203_I	0.975	0.89
122_L	148_A	0.973	0.89
46_E	54_F	0.962	0.89
112_T	161_I	0.960	0.89
83_A	124_E	0.925	0.87
180_L	195_K	0.917	0.86
100_R	195_K	0.909	0.86
86_A	92_H	0.907	0.86
46_E	58_Q	0.906	0.86
27_G	30_S	0.895	0.85
55_Q	59_G	0.891	0.85
51_G	58_Q	0.883	0.84
71_E	142_E	0.877	0.84
35_T	38_E	0.872	0.83
41_Q	49_D	0.867	0.83
37_H	103_P	0.851	0.82
110_K	150_N	0.848	0.82
105_E	141_R	0.839	0.81
54_F	58_Q	0.829	0.80
103_P	177_T	0.821	0.79
46_E	49_D	0.813	0.79
34_K	37_H	0.813	0.79
29_A	33_L	0.811	0.79
125_S	132_P	0.811	0.79
133_L	148_A	0.806	0.78
108_I	146_V	0.805	0.78
32_I	39_K	0.801	0.78
41_Q	48_D	0.800	0.78
25_I	30_S	0.789	0.77
45_C	57_M	0.786	0.76
103_P	109_Q	0.786	0.76
44_L	105_E	0.780	0.76
76_A	143_N	0.780	0.76
86_A	90_H	0.779	0.76
88_S	111_G	0.776	0.75
76_A	80_L	0.775	0.75
114_L	148_A	0.771	0.75
90_H	124_E	0.766	0.75
116_A	145_L	0.760	0.74
46_E	51_G	0.757	0.74
133_L	147_S	0.757	0.74
111_G	150_N	0.755	0.73
82_K	121_S	0.755	0.73
81_A	158_E	0.753	0.73
122_L	126_I	0.753	0.73
170_A	199_L	0.749	0.73
105_E	109_Q	0.747	0.73
34_K	43_L	0.747	0.73
108_I	139_L	0.744	0.72
104_V	147_S	0.742	0.72
157_K	175_G	0.742	0.72
46_E	153_P	0.739	0.72
26_L	34_K	0.731	0.71
88_S	202_L	0.721	0.70
163_L	188_T	0.721	0.70
89_E	120_S	0.718	0.70
192_S	199_L	0.708	0.69
27_G	34_K	0.708	0.69
37_H	40_D	0.706	0.68
192_S	200_Y	0.704	0.68
151_V	181_V	0.701	0.68
114_L	133_L	0.694	0.67
121_S	124_E	0.693	0.67
53_V	160_D	0.693	0.67
80_L	84_I	0.692	0.67
28_D	142_E	0.686	0.66
183_V	192_S	0.685	0.66
48_D	51_G	0.681	0.66
98_I	140_V	0.676	0.65
81_A	84_I	0.676	0.65
179_A	194_A	0.676	0.65
25_I	28_D	0.673	0.65
50_L	148_A	0.666	0.64
56_D	60_I	0.665	0.64
110_K	188_T	0.662	0.63
60_I	87_L	0.662	0.63
133_L	168_R	0.660	0.63
56_D	62_S	0.658	0.63
100_R	177_T	0.656	0.63
111_G	153_P	0.654	0.62
77_F	81_A	0.652	0.62
97_V	165_T	0.651	0.62
55_Q	125_S	0.651	0.62
126_I	138_L	0.651	0.62
171_L	174_S	0.646	0.62
73_F	118_I	0.645	0.61
53_V	165_T	0.645	0.61
190_K	201_P	0.640	0.61
31_L	38_E	0.640	0.61
91_K	104_V	0.639	0.61
114_L	144_K	0.638	0.61
32_I	68_S	0.637	0.60
113_S	122_L	0.633	0.60
84_I	100_R	0.632	0.60
52_H	152_L	0.632	0.60
147_S	152_L	0.631	0.60
200_Y	203_I	0.630	0.60
80_L	145_L	0.628	0.59
89_E	155_T	0.625	0.59
26_L	29_A	0.623	0.59
121_S	159_V	0.622	0.59
95_L	157_K	0.619	0.58
43_L	60_I	0.615	0.58
70_I	107_F	0.615	0.58
98_I	204_S	0.615	0.58
47_L	51_G	0.614	0.58
32_I	158_E	0.613	0.58
50_L	53_V	0.606	0.57
60_I	170_A	0.606	0.57
86_A	120_S	0.605	0.57
90_H	129_P	0.605	0.57
177_T	195_K	0.598	0.56
80_L	140_V	0.595	0.55
182_L	193_F	0.594	0.55
41_Q	51_G	0.589	0.55
113_S	117_E	0.588	0.54
96_I	138_L	0.588	0.54
68_S	73_F	0.588	0.54
36_L	39_K	0.588	0.54
29_A	44_L	0.588	0.54
57_M	63_S	0.587	0.54
83_A	123_I	0.584	0.54
54_F	92_H	0.583	0.54
61_A	173_M	0.583	0.54
76_A	142_E	0.582	0.54
80_L	118_I	0.579	0.53
40_D	50_L	0.575	0.53
69_Y	73_F	0.573	0.53
119_S	124_E	0.568	0.52
58_Q	153_P	0.568	0.52
182_L	200_Y	0.567	0.52
190_K	194_A	0.566	0.52
38_E	43_L	0.565	0.52
73_F	149_A	0.565	0.52
92_H	124_E	0.564	0.51
28_D	31_L	0.564	0.51
99_E	179_A	0.563	0.51
75_P	123_I	0.560	0.51
190_K	203_I	0.559	0.51
32_I	100_R	0.558	0.51
131_N	149_A	0.556	0.50
125_S	162_H	0.556	0.50
80_L	96_I	0.555	0.50
106_R	165_T	0.554	0.50
87_L	129_P	0.552	0.50
140_V	145_L	0.549	0.50
69_Y	72_E	0.549	0.50
87_L	113_S	0.548	0.49
53_V	204_S	0.546	0.49
91_K	125_S	0.545	0.49
114_L	122_L	0.545	0.49
36_L	98_I	0.544	0.49
47_L	52_H	0.544	0.49
66_L	183_V	0.544	0.49
80_L	204_S	0.544	0.49
67_Q	144_K	0.543	0.49
83_A	114_L	0.543	0.49
104_V	179_A	0.543	0.49
67_Q	78_I	0.541	0.49
154_L	169_A	0.541	0.49
159_V	190_K	0.540	0.48
188_T	192_S	0.539	0.48
64_F	114_L	0.538	0.48
140_V	202_L	0.537	0.48
49_D	159_V	0.536	0.48
50_L	160_D	0.533	0.48
70_I	198_V	0.531	0.47
173_M	179_A	0.530	0.47
50_L	61_A	0.529	0.47
112_T	157_K	0.526	0.47
54_F	99_E	0.524	0.46
91_K	130_G	0.523	0.46
41_Q	188_T	0.522	0.46
81_A	182_L	0.520	0.46
49_D	153_P	0.519	0.46
28_D	33_L	0.518	0.46
55_Q	156_T	0.518	0.46
111_G	147_S	0.517	0.46
142_E	196_D	0.516	0.45
181_V	190_K	0.514	0.45
104_V	177_T	0.514	0.45
180_L	196_D	0.513	0.45
77_F	100_R	0.513	0.45
47_L	57_M	0.513	0.45
31_L	35_T	0.513	0.45
67_Q	70_I	0.511	0.45
56_D	199_L	0.510	0.45
99_E	178_D	0.507	0.44
60_I	103_P	0.505	0.44
31_L	99_E	0.504	0.44
42_C	45_C	0.502	0.44
45_C	197_G	0.501	0.44
38_E	119_S	0.500	0.43

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2fb5A	3	0.9758	100	0.314	Contact Map
4rv7A	1	0.7101	100	0.332	Contact Map
3c1yA	5	0.6763	100	0.451	Contact Map
4j1jD	3	0.2947	9.4	0.967	Contact Map
4jngA	3	0.2754	9.2	0.967	Contact Map
2lf3A	1	0.3382	9.2	0.967	Contact Map
3zlaA	3	0.2899	8.4	0.968	Contact Map
4bgpA	1	0.2947	7.4	0.969	Contact Map
4ro3A	2	0.4783	6.4	0.97	Contact Map
3mduA	2	0.3913	5.6	0.97	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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