GREMLIN Database
YOJJ - Uncharacterized protein YojJ
UniProt: O31854 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 207 (180)
Sequences: 1542 (1010)
Seq/√Len: 75.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
170_A183_V6.6831.00
123_I138_L5.5921.00
115_H144_K4.8921.00
173_M181_V4.7181.00
99_E141_R4.0621.00
147_S150_N3.5441.00
97_V173_M3.2451.00
85_K191_M3.1801.00
125_S131_N3.1681.00
137_A152_L3.0621.00
107_F139_L2.9421.00
174_S181_V2.8091.00
80_L98_I2.7571.00
76_A118_I2.7521.00
92_H129_P2.6831.00
194_A199_L2.4651.00
86_A124_E2.4461.00
97_V152_L2.4291.00
98_I182_L2.3141.00
154_L165_T2.2641.00
40_D44_L2.2581.00
155_T159_V2.2081.00
116_A122_L2.0851.00
84_I182_L2.0411.00
97_V181_V1.9801.00
141_R146_V1.8461.00
163_L201_P1.7391.00
83_A87_L1.6711.00
118_I140_V1.6231.00
128_F131_N1.6151.00
159_V171_L1.5980.99
107_F177_T1.5810.99
155_T171_L1.5660.99
151_V165_T1.5640.99
84_I96_I1.5630.99
29_A32_I1.5550.99
88_S188_T1.4870.99
94_A184_V1.4870.99
79_E120_S1.4110.99
96_I140_V1.4080.99
79_E82_K1.3600.98
84_I88_S1.3460.98
162_H201_P1.3300.98
82_K120_S1.3280.98
155_T175_G1.3170.98
190_K202_L1.2980.98
84_I191_M1.2880.98
100_R180_L1.2630.97
117_E144_K1.2580.97
40_D43_L1.2250.97
92_H128_F1.1980.96
125_S130_G1.1870.96
171_L199_L1.1850.96
174_S197_G1.1780.96
113_S146_V1.1470.95
124_E128_F1.1200.95
84_I87_L1.1140.94
97_V137_A1.0820.93
107_F176_Y1.0770.93
183_V194_A1.0710.93
50_L60_I1.0660.93
38_E49_D1.0400.92
181_V194_A1.0380.92
163_L199_L1.0340.92
107_F121_S1.0230.91
138_L148_A1.0190.91
152_L165_T1.0080.91
47_L58_Q1.0030.91
142_E193_F1.0010.91
35_T39_K1.0010.91
80_L182_L0.9990.90
55_Q106_R0.9980.90
138_L145_L0.9970.90
125_S128_F0.9880.90
48_D55_Q0.9810.90
112_T121_S0.9770.89
112_T149_A0.9760.89
85_K203_I0.9750.89
122_L148_A0.9730.89
46_E54_F0.9620.89
112_T161_I0.9600.89
83_A124_E0.9250.87
180_L195_K0.9170.86
100_R195_K0.9090.86
86_A92_H0.9070.86
46_E58_Q0.9060.86
27_G30_S0.8950.85
55_Q59_G0.8910.85
51_G58_Q0.8830.84
71_E142_E0.8770.84
35_T38_E0.8720.83
41_Q49_D0.8670.83
37_H103_P0.8510.82
110_K150_N0.8480.82
105_E141_R0.8390.81
54_F58_Q0.8290.80
103_P177_T0.8210.79
46_E49_D0.8130.79
34_K37_H0.8130.79
29_A33_L0.8110.79
125_S132_P0.8110.79
133_L148_A0.8060.78
108_I146_V0.8050.78
32_I39_K0.8010.78
41_Q48_D0.8000.78
25_I30_S0.7890.77
45_C57_M0.7860.76
103_P109_Q0.7860.76
44_L105_E0.7800.76
76_A143_N0.7800.76
86_A90_H0.7790.76
88_S111_G0.7760.75
76_A80_L0.7750.75
114_L148_A0.7710.75
90_H124_E0.7660.75
116_A145_L0.7600.74
46_E51_G0.7570.74
133_L147_S0.7570.74
111_G150_N0.7550.73
82_K121_S0.7550.73
81_A158_E0.7530.73
122_L126_I0.7530.73
170_A199_L0.7490.73
105_E109_Q0.7470.73
34_K43_L0.7470.73
108_I139_L0.7440.72
104_V147_S0.7420.72
157_K175_G0.7420.72
46_E153_P0.7390.72
26_L34_K0.7310.71
88_S202_L0.7210.70
163_L188_T0.7210.70
89_E120_S0.7180.70
192_S199_L0.7080.69
27_G34_K0.7080.69
37_H40_D0.7060.68
192_S200_Y0.7040.68
151_V181_V0.7010.68
114_L133_L0.6940.67
121_S124_E0.6930.67
53_V160_D0.6930.67
80_L84_I0.6920.67
28_D142_E0.6860.66
183_V192_S0.6850.66
48_D51_G0.6810.66
98_I140_V0.6760.65
81_A84_I0.6760.65
179_A194_A0.6760.65
25_I28_D0.6730.65
50_L148_A0.6660.64
56_D60_I0.6650.64
110_K188_T0.6620.63
60_I87_L0.6620.63
133_L168_R0.6600.63
56_D62_S0.6580.63
100_R177_T0.6560.63
111_G153_P0.6540.62
77_F81_A0.6520.62
97_V165_T0.6510.62
55_Q125_S0.6510.62
126_I138_L0.6510.62
171_L174_S0.6460.62
73_F118_I0.6450.61
53_V165_T0.6450.61
190_K201_P0.6400.61
31_L38_E0.6400.61
91_K104_V0.6390.61
114_L144_K0.6380.61
32_I68_S0.6370.60
113_S122_L0.6330.60
84_I100_R0.6320.60
52_H152_L0.6320.60
147_S152_L0.6310.60
200_Y203_I0.6300.60
80_L145_L0.6280.59
89_E155_T0.6250.59
26_L29_A0.6230.59
121_S159_V0.6220.59
95_L157_K0.6190.58
43_L60_I0.6150.58
70_I107_F0.6150.58
98_I204_S0.6150.58
47_L51_G0.6140.58
32_I158_E0.6130.58
50_L53_V0.6060.57
60_I170_A0.6060.57
86_A120_S0.6050.57
90_H129_P0.6050.57
177_T195_K0.5980.56
80_L140_V0.5950.55
182_L193_F0.5940.55
41_Q51_G0.5890.55
113_S117_E0.5880.54
96_I138_L0.5880.54
68_S73_F0.5880.54
36_L39_K0.5880.54
29_A44_L0.5880.54
57_M63_S0.5870.54
83_A123_I0.5840.54
54_F92_H0.5830.54
61_A173_M0.5830.54
76_A142_E0.5820.54
80_L118_I0.5790.53
40_D50_L0.5750.53
69_Y73_F0.5730.53
119_S124_E0.5680.52
58_Q153_P0.5680.52
182_L200_Y0.5670.52
190_K194_A0.5660.52
38_E43_L0.5650.52
73_F149_A0.5650.52
92_H124_E0.5640.51
28_D31_L0.5640.51
99_E179_A0.5630.51
75_P123_I0.5600.51
190_K203_I0.5590.51
32_I100_R0.5580.51
131_N149_A0.5560.50
125_S162_H0.5560.50
80_L96_I0.5550.50
106_R165_T0.5540.50
87_L129_P0.5520.50
140_V145_L0.5490.50
69_Y72_E0.5490.50
87_L113_S0.5480.49
53_V204_S0.5460.49
91_K125_S0.5450.49
114_L122_L0.5450.49
36_L98_I0.5440.49
47_L52_H0.5440.49
66_L183_V0.5440.49
80_L204_S0.5440.49
67_Q144_K0.5430.49
83_A114_L0.5430.49
104_V179_A0.5430.49
67_Q78_I0.5410.49
154_L169_A0.5410.49
159_V190_K0.5400.48
188_T192_S0.5390.48
64_F114_L0.5380.48
140_V202_L0.5370.48
49_D159_V0.5360.48
50_L160_D0.5330.48
70_I198_V0.5310.47
173_M179_A0.5300.47
50_L61_A0.5290.47
112_T157_K0.5260.47
54_F99_E0.5240.46
91_K130_G0.5230.46
41_Q188_T0.5220.46
81_A182_L0.5200.46
49_D153_P0.5190.46
28_D33_L0.5180.46
55_Q156_T0.5180.46
111_G147_S0.5170.46
142_E196_D0.5160.45
181_V190_K0.5140.45
104_V177_T0.5140.45
180_L196_D0.5130.45
77_F100_R0.5130.45
47_L57_M0.5130.45
31_L35_T0.5130.45
67_Q70_I0.5110.45
56_D199_L0.5100.45
99_E178_D0.5070.44
60_I103_P0.5050.44
31_L99_E0.5040.44
42_C45_C0.5020.44
45_C197_G0.5010.44
38_E119_S0.5000.43
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2fb5A 3 0.9758 100 0.314 Contact Map
4rv7A 1 0.7101 100 0.332 Contact Map
3c1yA 5 0.6763 100 0.451 Contact Map
4j1jD 3 0.2947 9.4 0.967 Contact Map
4jngA 3 0.2754 9.2 0.967 Contact Map
2lf3A 1 0.3382 9.2 0.967 Contact Map
3zlaA 3 0.2899 8.4 0.968 Contact Map
4bgpA 1 0.2947 7.4 0.969 Contact Map
4ro3A 2 0.4783 6.4 0.97 Contact Map
3mduA 2 0.3913 5.6 0.97 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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