GREMLIN Database
YOZC - Uncharacterized protein YozC
UniProt: O31848 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 67 (65)
Sequences: 125 (75)
Seq/√Len: 9.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
16_K65_E4.2730.99
14_K38_E3.1250.93
30_V53_T2.8610.89
13_K39_V2.7850.88
23_K62_E2.3850.78
50_V56_V2.1590.70
20_T33_P2.0340.65
30_V59_Y1.6620.49
11_T40_K1.6540.49
17_C40_K1.5950.46
20_T60_Y1.5430.44
17_C46_F1.4740.41
5_N18_V1.4500.40
7_L55_K1.4280.39
25_Y56_V1.3720.37
54_N60_Y1.3280.35
15_V47_L1.2950.34
26_I29_R1.2910.34
26_I49_V1.2370.32
36_E49_V1.1810.29
7_L56_V1.1450.28
43_T56_V1.1290.28
16_K57_G1.1220.27
39_V65_E1.1000.27
40_K46_F1.0540.25
49_V56_V1.0470.25
13_K49_V1.0440.25
46_F53_T1.0350.24
39_V44_E1.0290.24
15_V25_Y1.0220.24
21_N26_I1.0000.23
54_N57_G0.9990.23
43_T52_N0.9970.23
12_I57_G0.9930.23
4_K33_P0.9770.23
14_K36_E0.9530.22
4_K26_I0.9520.22
4_K29_R0.9160.21
8_E50_V0.9040.20
3_H18_V0.8730.19
11_T46_F0.8620.19
6_W61_K0.8580.19
21_N25_Y0.8540.19
23_K54_N0.8410.19
15_V32_T0.8400.19
20_T38_E0.8400.19
19_Q23_K0.8270.18
3_H11_T0.8270.18
26_I59_Y0.8090.18
15_V60_Y0.8080.18
4_K38_E0.8080.18
35_K57_G0.8030.18
17_C29_R0.8020.18
5_N47_L0.7890.17
11_T17_C0.7890.17
8_E52_N0.7880.17
2_I40_K0.7800.17
44_E50_V0.7790.17
33_P55_K0.7450.16
4_K47_L0.7430.16
5_N9_K0.7410.16
28_N44_E0.7360.16
7_L10_E0.7220.16
9_K21_N0.7130.15
35_K50_V0.7060.15
9_K47_L0.6870.15
23_K35_K0.6770.15
9_K50_V0.6750.15
12_I16_K0.6750.15
36_E65_E0.6640.14
33_P60_Y0.6590.14
1_M61_K0.6560.14
26_I53_T0.6500.14
9_K26_I0.6460.14
42_E61_K0.6230.13
12_I18_V0.6220.13
15_V20_T0.6220.13
52_N60_Y0.6190.13
10_E30_V0.6160.13
5_N15_V0.6100.13
3_H23_K0.6090.13
13_K62_E0.6000.13
13_K38_E0.5960.13
43_T53_T0.5920.13
29_R53_T0.5800.13
1_M6_W0.5770.13
12_I23_K0.5720.12
8_E15_V0.5660.12
15_V56_V0.5630.12
8_E12_I0.5600.12
2_I5_N0.5580.12
17_C48_F0.5520.12
25_Y62_E0.5490.12
5_N14_K0.5340.12
11_T49_V0.5330.12
8_E36_E0.5120.11
18_V53_T0.5100.11
5_N54_N0.5000.11
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4nehB 1 0.791 19.6 0.919 Contact Map
4igiA 1 0.3134 19.4 0.919 Contact Map
4okrA 1 0.4328 19 0.919 Contact Map
2odpA 1 0.4478 17 0.921 Contact Map
1atzA 1 0.3881 14.2 0.924 Contact Map
4z9nA 2 0.7164 13.6 0.924 Contact Map
1mf7A 1 0.4328 12.5 0.925 Contact Map
1mjnA 1 0.3433 12.4 0.926 Contact Map
1pt6A 1 0.2985 11.4 0.927 Contact Map
1rrkA 1 0.3731 11 0.927 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0044 seconds.