GREMLIN Database
PPSE - Plipastatin synthase subunit E
UniProt: O31827 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 1279 (1027)
Sequences: 17113 (14225)
Seq/√Len: 443.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
618_L635_M4.9581.00
890_M927_D4.4341.00
813_L853_A4.2481.00
528_T554_L4.0831.00
526_N617_D3.6871.00
526_N822_K3.6341.00
74_V90_M3.4961.00
556_L565_V3.4471.00
637_T822_K3.3301.00
282_D313_R3.2851.00
508_D608_P3.1661.00
320_E328_R3.0741.00
571_E623_Y3.0701.00
1029_P1032_F2.8451.00
508_D548_K2.8441.00
757_A775_E2.8081.00
984_L1020_L2.7921.00
797_I853_A2.7711.00
658_R683_S2.6911.00
854_R862_E2.6751.00
512_N548_K2.6591.00
517_E521_K2.6511.00
987_I1016_V2.6481.00
226_S421_D2.6181.00
47_T145_E2.6111.00
810_P864_I2.6051.00
974_I1000_D2.5951.00
485_Q489_T2.5861.00
980_V1047_Y2.5641.00
772_T795_A2.5251.00
798_L814_C2.5201.00
483_R508_D2.5121.00
273_M435_A2.4971.00
523_F551_G2.4951.00
476_H484_E2.4951.00
1002_D1005_A2.4911.00
797_I861_L2.4491.00
322_F439_A2.4301.00
64_I172_I2.4151.00
700_A704_E2.4061.00
816_G846_I2.4011.00
640_N768_T2.3731.00
413_F425_I2.3731.00
715_A739_E2.3721.00
505_K509_K2.3661.00
514_L541_I2.3571.00
516_R609_I2.3461.00
795_A815_V2.3371.00
277_Y431_Q2.3221.00
977_R999_I2.3131.00
422_A426_S2.3081.00
827_R830_L2.2981.00
657_D708_T2.2941.00
514_L545_A2.2601.00
1000_D1040_A2.2491.00
990_Q1019_T2.2461.00
530_G574_A2.2361.00
911_T941_W2.2351.00
637_T640_N2.2351.00
485_Q488_K2.2241.00
1002_D1037_P2.2141.00
205_A339_F2.1931.00
212_Y332_E2.1671.00
873_I900_L2.1601.00
294_S298_G2.1561.00
527_E575_K2.1521.00
523_F527_E2.1441.00
711_F770_F2.1351.00
525_K617_D2.1301.00
255_A265_L2.1251.00
913_Y941_W2.1241.00
489_T492_H2.1241.00
618_L822_K2.1231.00
527_E551_G2.1091.00
1021_K1027_D2.1021.00
979_L982_E2.0881.00
1038_T1041_Q2.0711.00
978_N1047_Y2.0701.00
49_K145_E2.0681.00
241_F411_I2.0631.00
258_H323_H2.0591.00
914_V947_M2.0541.00
794_T838_H2.0451.00
528_T621_I2.0421.00
794_T816_G2.0351.00
810_P852_L2.0281.00
902_E907_A2.0211.00
621_I825_L2.0181.00
973_I996_T2.0141.00
493_T501_S1.9991.00
643_S792_N1.9981.00
62_Q66_D1.9931.00
912_H961_P1.9861.00
539_F665_I1.9751.00
999_I1039_I1.9681.00
67_R168_E1.9401.00
431_Q457_E1.9351.00
237_E417_A1.9341.00
512_N516_R1.9331.00
413_F429_K1.9261.00
403_V411_I1.9191.00
657_D732_H1.9191.00
251_L262_L1.9131.00
284_V311_P1.9091.00
567_F630_R1.9031.00
323_H444_H1.9031.00
271_G314_I1.9021.00
101_D140_K1.9011.00
669_A711_F1.8781.00
657_D682_A1.8731.00
237_E422_A1.8711.00
985_A1039_I1.8661.00
511_S548_K1.8611.00
496_V683_S1.8431.00
640_N820_V1.8431.00
616_D639_R1.8331.00
871_M880_P1.8321.00
886_R928_L1.8291.00
688_D691_T1.8291.00
64_I169_F1.8231.00
889_E931_V1.8191.00
888_L895_E1.8171.00
20_L85_P1.8101.00
987_I1020_L1.8061.00
998_S1001_D1.8041.00
649_N791_S1.8031.00
884_E898_V1.7961.00
113_Y116_R1.7931.00
531_I543_V1.7891.00
856_L862_E1.7891.00
974_I999_I1.7821.00
133_L156_L1.7671.00
838_H844_E1.7631.00
988_W1039_I1.7521.00
152_H157_M1.7501.00
897_A955_I1.7471.00
252_K405_P1.7461.00
206_A350_N1.7441.00
658_R707_I1.7441.00
978_N999_I1.7411.00
1003_F1008_G1.7381.00
58_Q62_Q1.7341.00
167_Q301_Q1.7331.00
1011_L1014_L1.7191.00
672_F770_F1.7181.00
1032_F1045_K1.7151.00
567_F623_Y1.7151.00
32_F77_P1.7141.00
510_R538_E1.7051.00
795_A813_L1.7041.00
239_L426_S1.7041.00
528_T552_A1.6991.00
663_G669_A1.6981.00
910_Y942_V1.6971.00
774_F785_P1.6971.00
761_I770_F1.6931.00
270_W365_E1.6911.00
687_I701_Y1.6871.00
662_T713_T1.6851.00
446_P449_D1.6801.00
508_D512_N1.6791.00
206_A342_Q1.6781.00
1016_V1033_L1.6781.00
856_L860_N1.6761.00
497_Y537_P1.6721.00
542_S578_I1.6711.00
616_D637_T1.6691.00
74_V131_D1.6651.00
691_T697_R1.6631.00
103_S143_K1.6591.00
491_D505_K1.6571.00
897_A947_M1.6551.00
442_H445_M1.6551.00
270_W401_L1.6531.00
912_H963_P1.6451.00
225_V424_W1.6451.00
685_H707_I1.6421.00
644_L770_F1.6411.00
978_N982_E1.6401.00
531_I542_S1.6391.00
711_F761_I1.6371.00
902_E905_G1.6361.00
483_R548_K1.6351.00
774_F860_N1.6341.00
478_I641_V1.6341.00
508_D511_S1.6321.00
1036_H1045_K1.6271.00
672_F711_F1.6251.00
165_V303_I1.6221.00
216_Y284_V1.6161.00
614_S617_D1.6141.00
269_V436_L1.6121.00
282_D315_K1.6101.00
401_L413_F1.6041.00
644_L672_F1.6031.00
685_H701_Y1.6001.00
913_Y943_R1.5991.00
673_E711_F1.5981.00
496_V705_N1.5971.00
78_H82_L1.5961.00
61_I136_I1.5911.00
451_S458_K1.5891.00
694_T697_R1.5871.00
560_L568_M1.5851.00
524_R527_E1.5831.00
502_I541_I1.5711.00
799_D803_R1.5711.00
841_L844_E1.5701.00
566_S570_E1.5681.00
73_T87_Q1.5641.00
57_F169_F1.5631.00
900_L907_A1.5591.00
991_V1016_V1.5571.00
210_D350_N1.5571.00
321_T324_E1.5561.00
502_I537_P1.5491.00
660_I687_I1.5471.00
711_F737_G1.5441.00
493_T683_S1.5441.00
569_L574_A1.5341.00
944_V947_M1.5331.00
438_T451_S1.5231.00
477_T480_D1.5191.00
869_R957_R1.5161.00
735_Y761_I1.5121.00
247_L437_S1.5081.00
484_E488_K1.5071.00
275_Q316_T1.5021.00
207_A211_T1.5001.00
795_A853_A1.4991.00
701_Y705_N1.4981.00
983_E986_N1.4961.00
483_R511_S1.4961.00
545_A549_A1.4921.00
1031_D1035_E1.4801.00
644_L737_G1.4751.00
1009_H1012_R1.4731.00
233_S418_F1.4701.00
264_T330_Q1.4661.00
465_F855_W1.4571.00
268_A325_L1.4551.00
117_F139_F1.4501.00
516_R605_N1.4491.00
540_M674_M1.4471.00
100_E137_S1.4461.00
560_L666_S1.4451.00
63_A66_D1.4421.00
982_E986_N1.4301.00
984_L1039_I1.4281.00
836_S846_I1.4231.00
634_V821_A1.4181.00
25_E84_G1.4171.00
644_L711_F1.4141.00
311_P347_I1.4121.00
315_K320_E1.4111.00
208_Y336_A1.4091.00
981_E999_I1.4081.00
562_P566_S1.4071.00
876_K935_Y1.4071.00
68_H168_E1.4001.00
1009_H1030_I1.3981.00
52_L146_H1.3951.00
1020_L1024_Q1.3931.00
711_F714_T1.3911.00
271_G285_F1.3901.00
482_F486_A1.3891.00
613_S617_D1.3881.00
663_G711_F1.3871.00
57_F148_C1.3871.00
493_T496_V1.3811.00
669_A770_F1.3761.00
219_P359_D1.3751.00
262_L409_L1.3741.00
1009_H1013_A1.3731.00
886_R931_V1.3721.00
114_I147_V1.3711.00
771_S815_V1.3711.00
521_K592_T1.3711.00
898_V911_T1.3701.00
737_G770_F1.3681.00
977_R1040_A1.3661.00
888_L896_A1.3651.00
481_L642_V1.3651.00
433_T437_S1.3621.00
269_V439_A1.3611.00
205_A341_C1.3611.00
347_I351_T1.3611.00
552_A618_L1.3601.00
554_L572_T1.3591.00
542_S546_V1.3561.00
73_T89_V1.3541.00
49_K387_D1.3521.00
426_S430_R1.3501.00
317_H320_E1.3451.00
985_A999_I1.3441.00
482_F544_L1.3441.00
920_T923_D1.3431.00
75_F156_L1.3431.00
277_Y428_I1.3421.00
103_S140_K1.3401.00
802_G814_C1.3371.00
500_M510_R1.3291.00
242_S408_E1.3281.00
51_S144_D1.3281.00
980_V983_E1.3271.00
812_E848_R1.3271.00
1011_L1030_I1.3251.00
571_E827_R1.3241.00
356_E359_D1.3241.00
479_I638_N1.3231.00
270_W367_Y1.3201.00
1015_Q1019_T1.3201.00
977_R981_E1.3191.00
983_E1023_Q1.3181.00
669_A737_G1.3161.00
342_Q350_N1.3151.00
1009_H1014_L1.3151.00
253_E257_Q1.3151.00
644_L769_T1.3141.00
520_Q604_E1.3131.00
658_R685_H1.3111.00
984_L1043_A1.3091.00
17_I86_R1.3041.00
203_E207_A1.3031.00
476_H480_D1.3021.00
244_N437_S1.2991.00
1020_L1026_I1.2971.00
127_D130_K1.2941.00
709_V733_T1.2941.00
660_I702_L1.2931.00
316_T320_E1.2911.00
459_E463_T1.2891.00
523_F529_A1.2861.00
1013_A1017_I1.2841.00
671_T769_T1.2821.00
880_P898_V1.2811.00
254_T440_A1.2801.00
973_I998_S1.2781.00
172_I184_L1.2781.00
796_Y840_F1.2721.00
493_T503_S1.2701.00
644_L673_E1.2661.00
479_I613_S1.2661.00
54_Y138_L1.2651.00
439_A450_F1.2641.00
838_H846_I1.2631.00
481_L646_R1.2601.00
887_L911_T1.2561.00
672_F761_I1.2561.00
605_N609_I1.2561.00
509_K606_D1.2551.00
69_D189_P1.2531.00
498_G688_D1.2521.00
286_G363_V1.2501.00
580_Q583_L1.2501.00
206_A210_D1.2491.00
458_K462_V1.2491.00
711_F716_L1.2481.00
980_V1046_L1.2481.00
116_R120_K1.2481.00
314_I329_C1.2471.00
497_Y500_M1.2461.00
797_I813_L1.2451.00
648_S680_N1.2441.00
644_L768_T1.2411.00
523_F549_A1.2411.00
526_N618_L1.2411.00
913_Y924_F1.2381.00
657_D709_V1.2351.00
570_E630_R1.2331.00
974_I1040_A1.2311.00
533_A542_S1.2291.00
445_M449_D1.2271.00
669_A672_F1.2261.00
111_N115_E1.2261.00
121_D124_K1.2211.00
1017_I1033_L1.2201.00
1004_F1034_F1.2191.00
121_D151_S1.2161.00
465_F807_I1.2151.00
272_V435_A1.2141.00
435_A450_F1.2131.00
250_K437_S1.2111.00
677_A682_A1.2111.00
233_S416_N1.2091.00
661_M686_I1.2091.00
689_K692_M1.2091.00
496_V501_S1.2091.00
49_K385_Q1.2051.00
985_A997_I1.2051.00
1032_F1035_E1.2051.00
662_T712_L1.2041.00
571_E630_R1.2021.00
1014_L1030_I1.2011.00
58_Q99_S1.2011.00
562_P586_N1.1991.00
636_I821_A1.1991.00
25_E198_T1.1961.00
460_Q464_Q1.1961.00
483_R608_P1.1921.00
830_L834_V1.1921.00
741_L760_N1.1911.00
331_K335_E1.1871.00
272_V325_L1.1831.00
796_Y838_H1.1821.00
63_A172_I1.1821.00
47_T387_D1.1801.00
1009_H1024_Q1.1781.00
572_T623_Y1.1771.00
268_A329_C1.1701.00
486_A508_D1.1661.00
717_F736_V1.1651.00
1013_A1030_I1.1611.00
828_V832_N1.1611.00
273_M432_F1.1601.00
886_R889_E1.1581.00
319_D448_A1.1571.00
53_S56_W1.1571.00
241_F429_K1.1551.00
250_K441_Q1.1551.00
925_R929_A1.1531.00
648_S676_G1.1511.00
925_R941_W1.1501.00
530_G569_L1.1461.00
606_D609_I1.1461.00
852_L867_I1.1441.00
66_D92_E1.1421.00
579_V583_L1.1421.00
722_Q748_A1.1411.00
235_H418_F1.1391.00
239_L422_A1.1381.00
873_I878_I1.1361.00
706_D730_G1.1361.00
767_N815_V1.1351.00
53_S173_Y1.1351.00
266_I409_L1.1341.00
662_T770_F1.1341.00
672_F737_G1.1341.00
873_I907_A1.1341.00
635_M825_L1.1341.00
495_L537_P1.1341.00
737_G768_T1.1321.00
714_T745_L1.1311.00
660_I701_Y1.1301.00
459_E464_Q1.1301.00
742_S745_L1.1291.00
645_V679_L1.1281.00
495_L540_M1.1271.00
479_I547_L1.1271.00
641_V769_T1.1261.00
790_I793_S1.1251.00
767_N820_V1.1231.00
244_N247_L1.1221.00
654_S657_D1.1191.00
430_R454_D1.1181.00
258_H327_I1.1181.00
363_V366_N1.1171.00
76_L88_V1.1151.00
983_E1024_Q1.1121.00
581_K597_D1.1111.00
421_D424_W1.1111.00
662_T716_L1.1101.00
470_T792_N1.1091.00
560_L951_G1.1071.00
75_F155_I1.1051.00
749_V758_L1.1051.00
821_A835_F1.1021.00
794_T844_E1.1021.00
653_A682_A1.1011.00
673_E761_I1.1011.00
212_Y335_E1.1001.00
239_L429_K1.0991.00
538_E580_Q1.0991.00
636_I768_T1.0971.00
1013_A1033_L1.0961.00
1036_H1041_Q1.0961.00
27_M305_L1.0951.00
449_D803_R1.0941.00
58_Q96_H1.0911.00
420_Y425_I1.0901.00
22_H197_L1.0901.00
759_H775_E1.0891.00
644_L716_L1.0881.00
815_V849_T1.0871.00
138_L148_C1.0851.00
713_T770_F1.0821.00
208_Y212_Y1.0821.00
807_I855_W1.0811.00
567_F571_E1.0801.00
415_Y425_I1.0761.00
988_W1008_G1.0761.00
208_Y335_E1.0751.00
733_T759_H1.0741.00
677_A684_L1.0701.00
927_D931_V1.0681.00
718_N742_S1.0681.00
563_E567_F1.0671.00
128_L155_I1.0671.00
483_R512_N1.0671.00
672_F716_L1.0661.00
767_N771_S1.0651.00
663_G712_L1.0641.00
250_K440_A1.0641.00
673_E770_F1.0631.00
193_Y196_W1.0611.00
237_E415_Y1.0611.00
238_D414_S1.0601.00
511_S545_A1.0591.00
788_K860_N1.0591.00
400_N414_S1.0591.00
482_F508_D1.0551.00
1020_L1046_L1.0551.00
999_I1040_A1.0541.00
533_A578_I1.0531.00
45_L147_V1.0511.00
211_T214_K1.0501.00
521_K576_M1.0501.00
989_K996_T1.0491.00
248_T409_L1.0471.00
712_L717_F1.0461.00
1009_H1020_L1.0461.00
401_L411_I1.0441.00
547_L619_A1.0431.00
560_L935_Y1.0401.00
743_P747_N1.0381.00
472_Y792_N1.0361.00
1019_T1023_Q1.0351.00
513_A606_D1.0351.00
710_L731_L1.0341.00
503_S506_E1.0321.00
869_R884_E1.0321.00
1020_L1028_I1.0311.00
668_D764_P1.0291.00
924_F941_W1.0291.00
746_M758_L1.0281.00
644_L771_S1.0281.00
796_Y816_G1.0251.00
645_V676_G1.0241.00
275_Q278_N1.0241.00
890_M924_F1.0231.00
772_T786_I1.0221.00
62_Q94_E1.0201.00
661_M684_L1.0191.00
718_N745_L1.0191.00
534_A580_Q1.0181.00
1016_V1042_L1.0171.00
31_S36_E1.0171.00
58_Q97_L1.0161.00
45_L149_I1.0151.00
1017_I1021_K1.0151.00
480_D483_R1.0141.00
260_V264_T1.0131.00
121_D137_S1.0131.00
427_C431_Q1.0121.00
114_I139_F1.0081.00
737_G761_I1.0081.00
797_I805_L1.0051.00
460_Q465_F1.0051.00
242_S410_V0.9991.00
537_P541_I0.9981.00
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682_A746_M0.5010.97
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527_E576_M0.5000.97
837_P845_R0.5000.97
711_F745_L0.5000.97
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4dg8A 1 0.3831 100 0.568 Contact Map
4iz6A 2 0.4558 100 0.597 Contact Map
4r0mB 1 0.4472 100 0.609 Contact Map
1amuA 1 0.3941 100 0.629 Contact Map
4d4iA 1 0.3628 100 0.643 Contact Map
3tsyA 2 0.509 100 0.651 Contact Map
4gr5A 1 0.3573 100 0.661 Contact Map
3g7sA 2 0.3612 100 0.666 Contact Map
3wvnA 1 0.294 100 0.668 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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