GREMLIN Database
PKSS - Polyketide biosynthesis cytochrome P450 PksS
UniProt: O31785 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 405 (359)
Sequences: 43612 (32020)
Seq/√Len: 1690.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
329_N332_I3.7691.00
329_N334_N3.3161.00
266_K336_N3.2021.00
301_T306_S3.1081.00
253_G281_L3.0771.00
127_E368_A3.0721.00
253_G366_F2.9811.00
308_K311_D2.9041.00
249_L362_G2.8231.00
275_A363_H2.7031.00
205_R228_E2.6471.00
49_R52_D2.6171.00
256_A285_T2.5941.00
299_D309_R2.5891.00
299_D306_S2.5291.00
264_C268_K2.4741.00
265_E269_Q2.4631.00
263_E273_M2.3871.00
32_R43_P2.3621.00
322_R331_E2.3491.00
267_L277_A2.2891.00
296_A307_I2.2421.00
134_E373_F2.2291.00
204_R211_D2.2011.00
45_W311_D2.1331.00
121_S156_E2.1121.00
266_K273_M2.1051.00
123_E368_A2.1001.00
260_H263_E2.0891.00
198_A232_Y2.0831.00
52_D303_K2.0781.00
202_H228_E2.0411.00
134_E372_R2.0241.00
256_A284_Y2.0131.00
149_L365_A2.0061.00
351_F355_A1.9921.00
198_A228_E1.9681.00
301_T304_G1.9301.00
268_K374_P1.9061.00
255_L259_Q1.8721.00
278_V362_G1.8511.00
198_A202_H1.8511.00
30_I47_I1.8211.00
53_C320_A1.8211.00
279_E359_R1.7891.00
34_E43_P1.7701.00
263_E266_K1.7611.00
264_C374_P1.7521.00
63_T298_E1.7241.00
20_V23_R1.7201.00
188_Q192_E1.7121.00
250_L365_A1.7031.00
369_L376_I1.6921.00
54_M58_K1.6901.00
47_I56_F1.6881.00
265_E374_P1.6821.00
281_L333_L1.6781.00
29_P49_R1.6651.00
102_L234_M1.6451.00
125_I156_E1.6301.00
125_I128_Q1.6301.00
170_I174_A1.6281.00
299_D308_K1.6031.00
36_K41_T1.5961.00
265_E268_K1.5891.00
264_C370_L1.5761.00
199_K203_D1.5721.00
64_R300_F1.5461.00
167_Q171_W1.5331.00
282_L344_S1.5321.00
138_K379_A1.5281.00
256_A260_H1.5271.00
253_G277_A1.5241.00
121_S124_Q1.5211.00
227_S230_E1.5171.00
142_M251_G1.5001.00
253_G257_L1.4921.00
61_R298_E1.4901.00
318_G322_R1.4871.00
202_H206_I1.4861.00
124_Q156_E1.4851.00
368_A371_K1.4531.00
123_E127_E1.4281.00
276_T336_N1.4231.00
51_D303_K1.4181.00
47_I52_D1.4081.00
214_S218_H1.4051.00
267_L370_L1.4001.00
114_T117_N1.3961.00
284_Y322_R1.3601.00
53_C315_I1.3591.00
211_D214_S1.3591.00
171_W192_E1.3431.00
273_M336_N1.3261.00
202_H205_R1.3231.00
254_T369_L1.3181.00
62_I298_E1.3141.00
119_R363_H1.3141.00
20_V24_F1.3141.00
59_D62_I1.3091.00
324_P331_E1.3041.00
131_D372_R1.3021.00
267_L274_I1.3011.00
55_A59_D1.2991.00
125_I152_I1.2981.00
275_A279_E1.2741.00
29_P325_N1.2721.00
249_L287_P1.2701.00
321_N344_S1.2661.00
23_R27_E1.2641.00
268_K370_L1.2551.00
324_P330_P1.2431.00
326_F341_R1.2331.00
274_I370_L1.2331.00
200_L203_D1.2311.00
195_D199_K1.2291.00
263_E277_A1.2291.00
96_T100_T1.2201.00
97_P101_R1.2161.00
97_P100_T1.2141.00
22_G331_E1.2101.00
167_Q170_I1.2061.00
31_H46_L1.2051.00
63_T300_F1.2001.00
191_R195_D1.1991.00
298_E309_R1.1961.00
258_L264_C1.1921.00
328_E334_N1.1801.00
49_R325_N1.1801.00
127_E131_D1.1771.00
266_K269_Q1.1711.00
274_I367_K1.1681.00
154_I242_G1.1661.00
123_E364_I1.1621.00
167_Q192_E1.1581.00
295_W310_G1.1561.00
270_Q273_M1.1551.00
277_A281_L1.1541.00
94_K98_D1.1531.00
355_A359_R1.1521.00
279_E342_H1.1481.00
263_E335_I1.1461.00
44_A314_F1.1451.00
277_A333_L1.1401.00
116_E119_R1.1381.00
174_A185_L1.1301.00
258_L378_L1.1291.00
184_E188_Q1.1271.00
194_K198_A1.1261.00
130_L368_A1.1241.00
126_A149_L1.1161.00
119_R364_I1.1161.00
271_P371_K1.1021.00
48_T316_G1.0981.00
122_I153_V1.0971.00
263_E336_N1.0961.00
126_A368_A1.0931.00
266_K270_Q1.0891.00
89_D98_D1.0871.00
185_L189_A1.0851.00
194_K232_Y1.0841.00
122_I360_L1.0811.00
156_E161_P1.0801.00
23_R26_E1.0771.00
256_A281_L1.0661.00
119_R123_E1.0581.00
126_A130_L1.0581.00
124_Q128_Q1.0551.00
130_L373_F1.0551.00
229_K233_S1.0521.00
126_A364_I1.0521.00
45_W307_I1.0511.00
128_Q152_I1.0501.00
228_E232_Y1.0451.00
192_E195_D1.0441.00
296_A311_D1.0411.00
28_E31_H1.0351.00
52_D55_A1.0341.00
131_D134_E1.0341.00
321_N342_H1.0331.00
123_E367_K1.0331.00
101_R230_E1.0301.00
166_S170_I1.0281.00
215_K218_H1.0281.00
129_L149_L1.0201.00
128_Q132_E1.0181.00
151_F243_L1.0161.00
260_H332_I1.0141.00
273_M276_T1.0101.00
121_S125_I1.0101.00
190_L194_K1.0101.00
181_G185_L1.0071.00
271_P367_K1.0041.00
50_Y326_F1.0001.00
257_L267_L1.0001.00
112_P116_E0.9991.00
203_D206_I0.9941.00
170_I173_N0.9911.00
200_L204_R0.9881.00
267_L273_M0.9881.00
100_T104_S0.9841.00
174_A189_A0.9831.00
128_Q131_D0.9801.00
204_R214_S0.9741.00
98_D101_R0.9721.00
252_S285_T0.9671.00
256_A259_Q0.9661.00
261_K265_E0.9661.00
55_A303_K0.9651.00
258_L376_I0.9641.00
295_W312_M0.9621.00
111_T114_T0.9591.00
51_D55_A0.9571.00
374_P377_E0.9571.00
257_L264_C0.9491.00
272_E276_T0.9461.00
257_L263_E0.9451.00
324_P328_E0.9401.00
130_L372_R0.9351.00
338_S341_R0.9331.00
113_R117_N0.9301.00
208_P218_H0.9291.00
60_N63_T0.9271.00
296_A299_D0.9251.00
368_A372_R0.9241.00
115_I360_L0.9231.00
367_K371_K0.9221.00
60_N64_R0.9211.00
47_I53_C0.9181.00
300_F306_S0.9161.00
169_Q173_N0.9141.00
280_E283_R0.9081.00
30_I52_D0.9051.00
56_F315_I0.9031.00
213_I235_L0.9031.00
192_E196_Y0.9001.00
275_A359_R0.8971.00
132_E148_P0.8961.00
132_E144_S0.8961.00
22_G25_R0.8951.00
226_L230_E0.8951.00
358_A362_G0.8951.00
51_D325_N0.8931.00
262_K266_K0.8891.00
98_D230_E0.8851.00
250_L362_G0.8791.00
273_M335_I0.8761.00
220_E225_K0.8751.00
60_N300_F0.8751.00
183_R187_N0.8681.00
181_G184_E0.8651.00
19_S22_G0.8601.00
119_R360_L0.8601.00
127_E372_R0.8571.00
277_A335_I0.8511.00
249_L281_L0.8481.00
22_G319_S0.8441.00
292_A317_I0.8421.00
187_N191_R0.8371.00
30_I305_H0.8371.00
106_V353_L0.8361.00
98_D102_L0.8331.00
359_R363_H0.8321.00
174_A177_D0.8281.00
90_H237_L0.8281.00
42_Y312_M0.8261.00
174_A178_T0.8261.00
173_N177_D0.8241.00
244_E248_N0.8231.00
50_Y54_M0.8221.00
43_P311_D0.8211.00
189_A192_E0.8201.00
191_R194_K0.8171.00
160_I203_D0.8171.00
51_D54_M0.8141.00
55_A300_F0.8131.00
32_R45_W0.8131.00
199_K202_H0.8131.00
120_G124_Q0.8091.00
141_I254_T0.8081.00
136_E144_S0.8081.00
203_D207_K0.8071.00
380_V383_D0.8061.00
49_R303_K0.8061.00
259_Q378_L0.8061.00
25_R48_T0.8041.00
296_A308_K0.8041.00
261_K264_C0.8021.00
131_D135_K0.8011.00
254_T370_L0.7991.00
24_F31_H0.7961.00
274_I363_H0.7961.00
53_C343_I0.7951.00
125_I161_P0.7941.00
195_D198_A0.7921.00
145_F365_A0.7901.00
166_S169_Q0.7871.00
110_F353_L0.7831.00
44_A312_M0.7831.00
46_L316_G0.7821.00
132_E135_K0.7811.00
28_E305_H0.7791.00
149_L153_V0.7791.00
65_D68_N0.7771.00
307_I313_I0.7761.00
363_H367_K0.7751.00
194_K236_F0.7741.00
124_Q161_P0.7721.00
255_L378_L0.7681.00
171_W174_A0.7681.00
153_V361_E0.7671.00
182_N186_T0.7671.00
155_S162_K0.7661.00
29_P323_D0.7661.00
58_K347_F0.7611.00
66_V297_I0.7611.00
109_A215_K0.7591.00
201_I205_R0.7581.00
56_F302_Y0.7571.00
185_L188_Q0.7571.00
63_T66_V0.7551.00
145_F254_T0.7551.00
63_T297_I0.7551.00
306_S309_R0.7501.00
262_K265_E0.7491.00
249_L282_L0.7451.00
122_I357_L0.7451.00
128_Q161_P0.7411.00
263_E334_N0.7401.00
57_L315_I0.7401.00
106_V238_L0.7391.00
183_R186_T0.7381.00
197_I235_L0.7371.00
246_T361_E0.7351.00
194_K229_K0.7341.00
148_P152_I0.7321.00
174_A192_E0.7221.00
29_P303_K0.7191.00
176_V179_S0.7181.00
257_L277_A0.7131.00
317_I343_I0.7081.00
331_E334_N0.7071.00
210_D214_S0.7071.00
144_S148_P0.7041.00
33_F46_L0.7031.00
253_G333_L0.7031.00
165_R169_Q0.7021.00
364_I368_A0.7021.00
303_K306_S0.7021.00
261_K374_P0.6971.00
196_Y200_L0.6961.00
150_P246_T0.6961.00
112_P356_P0.6961.00
99_H103_R0.6941.00
65_D297_I0.6941.00
302_Y307_I0.6931.00
198_A229_K0.6931.00
54_M340_N0.6921.00
172_T176_V0.6881.00
253_G278_V0.6881.00
329_N337_R0.6871.00
103_R107_H0.6861.00
296_A310_G0.6851.00
286_S321_N0.6831.00
35_L44_A0.6821.00
168_F171_W0.6801.00
101_R224_S0.6781.00
323_D326_F0.6781.00
126_A365_A0.6751.00
276_T335_I0.6731.00
64_R67_K0.6721.00
316_G319_S0.6701.00
383_D387_W0.6681.00
273_M277_A0.6681.00
113_R116_E0.6671.00
94_K102_L0.6661.00
274_I366_F0.6651.00
117_N210_D0.6641.00
120_G123_E0.6641.00
357_L361_E0.6631.00
106_V234_M0.6621.00
241_A245_T0.6611.00
282_L342_H0.6591.00
205_R220_E0.6571.00
55_A60_N0.6571.00
133_M139_A0.6551.00
284_Y331_E0.6551.00
261_K377_E0.6531.00
257_L370_L0.6511.00
152_I165_R0.6501.00
90_H94_K0.6491.00
296_A300_F0.6481.00
196_Y199_K0.6461.00
187_N190_L0.6451.00
347_F351_F0.6441.00
126_A129_L0.6411.00
254_T376_I0.6401.00
159_G211_D0.6371.00
55_A302_Y0.6351.00
33_F44_A0.6331.00
209_K214_S0.6331.00
66_V94_K0.6311.00
57_L317_I0.6281.00
334_N337_R0.6271.00
278_V359_R0.6261.00
254_T366_F0.6251.00
380_V384_D0.6241.00
278_V363_H0.6231.00
170_I192_E0.6221.00
345_F359_R0.6221.00
91_M237_L0.6221.00
32_R311_D0.6191.00
296_A313_I0.6141.00
82_E85_D0.6121.00
221_E224_S0.6081.00
154_I157_L0.6081.00
25_R46_L0.6081.00
25_R319_S0.6081.00
175_M178_T0.6081.00
242_G245_T0.6081.00
293_N314_F0.6061.00
164_D167_Q0.6031.00
115_I357_L0.6021.00
208_P214_S0.6011.00
168_F172_T0.6001.00
84_I89_D0.6001.00
189_A193_F0.5981.00
184_E187_N0.5981.00
81_S84_I0.5971.00
296_A309_R0.5971.00
169_Q172_T0.5961.00
50_Y323_D0.5951.00
53_C57_L0.5931.00
129_L133_M0.5931.00
186_T190_L0.5921.00
160_I200_L0.5911.00
186_T189_A0.5901.00
210_D215_K0.5901.00
173_N176_V0.5891.00
150_P247_V0.5891.00
96_T349_I0.5881.00
65_D69_V0.5861.00
150_P361_E0.5851.00
274_I277_A0.5831.00
114_T118_L0.5811.00
274_I278_V0.5791.00
29_P32_R0.5781.00
272_E275_A0.5771.00
220_E223_G0.5771.00
48_T323_D0.5741.00
211_D215_K0.5731.00
256_A333_L0.5731.00
132_E152_I0.5731.00
249_L278_V0.5731.00
102_L230_E0.5721.00
276_T334_N0.5691.00
197_I200_L0.5691.00
222_N225_K0.5691.00
21_L25_R0.5681.00
122_I361_E0.5681.00
54_M347_F0.5681.00
193_F197_I0.5671.00
61_R64_R0.5671.00
18_F318_G0.5661.00
22_G26_E0.5661.00
110_F238_L0.5661.00
25_R29_P0.5641.00
34_E41_T0.5631.00
259_Q384_D0.5621.00
177_D180_E0.5611.00
26_E325_N0.5611.00
176_V180_E0.5591.00
31_H48_T0.5591.00
340_N347_F0.5581.00
297_I309_R0.5561.00
80_V84_I0.5561.00
210_D218_H0.5561.00
151_F239_V0.5561.00
65_D95_D0.5541.00
328_E332_I0.5541.00
220_E228_E0.5531.00
252_S387_W0.5521.00
364_I367_K0.5511.00
257_L260_H0.5511.00
56_F62_I0.5511.00
381_A384_D0.5501.00
322_R330_P0.5491.00
383_D386_Q0.5491.00
262_K332_I0.5491.00
147_S247_V0.5491.00
234_M237_L0.5471.00
29_P48_T0.5451.00
297_I300_F0.5451.00
122_I364_I0.5431.00
25_R31_H0.5431.00
89_D229_K0.5421.00
167_Q199_K0.5411.00
384_D387_W0.5401.00
51_D326_F0.5401.00
114_T215_K0.5381.00
45_W305_H0.5361.00
321_N343_I0.5361.00
118_L122_I0.5361.00
52_D302_Y0.5351.00
282_L287_P0.5351.00
46_L314_F0.5341.00
387_W394_R0.5311.00
19_S23_R0.5301.00
293_N312_M0.5271.00
91_M234_M0.5241.00
55_A301_T0.5231.00
201_I217_V0.5231.00
370_L376_I0.5221.00
266_K335_I0.5221.00
147_S173_N0.5211.00
253_G362_G0.5201.00
390_N394_R0.5191.00
105_L219_A0.5191.00
194_K233_S0.5161.00
139_A144_S0.5161.00
188_Q191_R0.5151.00
317_I321_N0.5151.00
216_L231_L0.5141.00
124_Q127_E0.5141.00
307_I311_D0.5131.00
148_P169_Q0.5131.00
116_E360_L0.5131.00
129_L365_A0.5121.00
278_V366_F0.5121.00
230_E234_M0.5111.00
171_W175_M0.5101.00
346_G351_F0.5091.00
193_F204_R0.5081.00
129_L132_E0.5081.00
246_T358_A0.5011.00
66_V295_W0.5011.00
327_F340_N0.5001.00
57_L347_F0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2uuqA 2 0.9556 100 0.196 Contact Map
3ejbB 1 0.9432 100 0.199 Contact Map
3zpiA 1 0.958 100 0.199 Contact Map
1z8oA 1 0.9654 100 0.2 Contact Map
3a4gA 1 0.9531 100 0.2 Contact Map
2z3tA 1 0.9309 100 0.201 Contact Map
3nc3A 1 0.9037 100 0.205 Contact Map
4tpnA 1 0.9259 100 0.207 Contact Map
2xkrA 1 0.9407 100 0.207 Contact Map
4mm0A 1 0.9556 100 0.209 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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