BIOF1 - BACSU - GREMLIN Contacts

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BIOF1 - 8-amino-7-oxononanoate synthase 1

UniProt:	O31777	Sequences: MTKEFEFLKAELNSMKENHTWQDIKQLESMQGPSVTVNHQKVIQLSSNNYLGFTSHPRLINAAQEAVQQYGAGTGSVRTIAGTFTMHQELEKKLAAFKKTEAALVFQSGFTTNQGVLSSILSKEDIVISDELNHASIIDGIRLTKADKKVYQHVNMSDLERVLRKSMNYRMRLIVTDGVFSMDGNIAPLPDIVELAEKYDAFVMVDDAHASGVLGENGRGTVNHFGLDGRVHIQVGTLSKAIGVLGGYAAGSKVLIDYLRHKGRPFLFSTSHPPAVTAACMEAIDVLLEEPEHMERLWENTAYFKAMLVKMGLTLTKSETPILPILIGDEGVAKQFSDQLLSRGVFAQSIVFPTVAKGKARIRTIITAEHTKDELDQALDVIEKTAKELQLL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	392 (361)
Sequences:	6420 (3899)
Seq/√Len:	205.2

ECOLI - KBL BIOF
BACSU - BIOF1 BIOF2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
64_Q	68_Q	4.189	1.00
93_K	285_D	4.133	1.00
303_Y	376_D	4.021	1.00
160_E	198_K	3.950	1.00
152_Q	158_D	3.802	1.00
197_E	230_R	3.779	1.00
343_R	384_K	3.645	1.00
188_P	191_D	3.203	1.00
158_D	162_V	3.102	1.00
176_T	180_F	3.066	1.00
93_K	281_M	2.849	1.00
282_E	285_D	2.834	1.00
303_Y	372_K	2.786	1.00
174_I	196_A	2.768	1.00
307_M	379_L	2.597	1.00
160_E	199_Y	2.579	1.00
296_R	300_N	2.507	1.00
93_K	288_L	2.443	1.00
251_G	256_I	2.321	1.00
61_N	65_E	2.292	1.00
106_F	263_G	2.277	1.00
217_N	223_N	2.273	1.00
160_E	164_R	2.270	1.00
190_P	225_F	2.251	1.00
251_G	255_L	2.249	1.00
236_G	248_Y	2.230	1.00
158_D	161_R	2.226	1.00
156_M	195_L	2.192	1.00
207_D	210_A	2.093	1.00
101_E	253_K	2.064	1.00
96_A	288_L	2.045	1.00
290_E	293_H	2.038	1.00
307_M	376_D	2.035	1.00
58_R	282_E	1.996	1.00
176_T	205_V	1.994	1.00
311_M	383_E	1.946	1.00
128_I	162_V	1.903	1.00
60_I	67_V	1.861	1.00
327_I	336_F	1.855	1.00
191_D	194_E	1.843	1.00
371_T	374_E	1.839	1.00
121_L	127_V	1.825	1.00
129_S	133_N	1.803	1.00
58_R	289_E	1.785	1.00
299_E	372_K	1.778	1.00
307_M	310_K	1.774	1.00
345_V	377_Q	1.768	1.00
34_S	41_K	1.757	1.00
56_H	286_V	1.757	1.00
216_E	223_N	1.727	1.00
117_L	175_V	1.710	1.00
339_Q	342_S	1.696	1.00
103_A	250_A	1.696	1.00
42_V	341_L	1.695	1.00
45_L	370_H	1.683	1.00
131_E	152_Q	1.665	1.00
61_N	68_Q	1.661	1.00
45_L	378_A	1.649	1.00
167_M	172_R	1.623	1.00
303_Y	307_M	1.615	1.00
86_M	281_M	1.595	1.00
97_F	219_R	1.584	1.00
127_V	141_I	1.575	1.00
65_E	69_Q	1.571	1.00
311_M	379_L	1.566	1.00
139_D	264_R	1.554	1.00
137_I	175_V	1.554	1.00
141_I	148_K	1.552	1.00
331_G	335_Q	1.544	1.00
238_L	280_C	1.541	1.00
304_F	366_I	1.531	1.00
128_I	172_R	1.513	1.00
115_G	265_P	1.512	1.00
244_V	280_C	1.506	1.00
95_A	103_A	1.503	1.00
196_A	203_V	1.500	1.00
245_L	273_P	1.492	1.00
207_D	221_T	1.473	1.00
164_R	199_Y	1.469	1.00
336_F	385_T	1.455	1.00
194_E	230_R	1.453	1.00
66_A	278_A	1.444	1.00
151_Y	176_T	1.422	1.00
291_P	295_E	1.420	1.00
339_Q	343_R	1.412	1.00
347_A	362_I	1.408	1.00
174_I	201_A	1.406	1.00
126_I	166_S	1.406	1.00
78_R	83_T	1.404	1.00
94_L	284_I	1.396	1.00
89_E	281_M	1.390	1.00
211_S	242_I	1.385	1.00
60_I	64_Q	1.376	1.00
377_Q	381_V	1.356	1.00
306_A	310_K	1.346	1.00
34_S	374_E	1.342	1.00
313_L	386_A	1.342	1.00
173_L	204_M	1.338	1.00
116_V	249_A	1.335	1.00
303_Y	375_L	1.313	1.00
253_K	257_D	1.302	1.00
156_M	188_P	1.300	1.00
64_Q	67_V	1.300	1.00
149_K	162_V	1.290	1.00
329_D	332_V	1.287	1.00
300_N	372_K	1.274	1.00
135_A	264_R	1.272	1.00
102_A	253_K	1.264	1.00
295_E	299_E	1.258	1.00
338_D	342_S	1.244	1.00
65_E	68_Q	1.242	1.00
128_I	166_S	1.239	1.00
195_L	199_Y	1.238	1.00
74_T	271_S	1.235	1.00
98_K	250_A	1.228	1.00
159_L	174_I	1.223	1.00
85_T	89_E	1.220	1.00
126_I	149_K	1.216	1.00
156_M	191_D	1.209	1.00
88_Q	92_K	1.202	1.00
178_G	210_A	1.187	1.00
121_L	173_L	1.185	1.00
330_E	360_A	1.183	1.00
302_A	306_A	1.181	1.00
178_G	221_T	1.178	1.00
83_T	88_Q	1.174	1.00
58_R	286_V	1.168	1.00
352_F	357_K	1.167	1.00
133_N	137_I	1.166	1.00
116_V	204_M	1.162	1.00
163_L	195_L	1.159	1.00
304_F	308_L	1.157	1.00
115_G	263_G	1.143	1.00
193_V	197_E	1.142	1.00
152_Q	155_N	1.141	1.00
94_L	238_L	1.140	1.00
98_K	211_S	1.134	1.00
300_N	303_Y	1.133	1.00
36_T	41_K	1.131	1.00
286_V	290_E	1.130	1.00
281_M	285_D	1.129	1.00
183_D	361_R	1.125	1.00
339_Q	385_T	1.121	1.00
124_E	170_R	1.121	1.00
154_V	188_P	1.115	1.00
304_F	364_T	1.112	1.00
174_I	195_L	1.112	1.00
160_E	195_L	1.110	1.00
300_N	375_L	1.105	1.00
222_V	227_L	1.104	1.00
193_V	231_V	1.100	1.00
153_H	185_N	1.094	1.00
92_K	96_A	1.094	1.00
364_T	378_A	1.093	1.00
163_L	201_A	1.086	1.00
102_A	256_I	1.086	1.00
151_Y	180_F	1.081	1.00
193_V	203_V	1.070	1.00
57_P	61_N	1.070	1.00
192_I	203_V	1.057	1.00
126_I	170_R	1.050	1.00
86_M	278_A	1.046	1.00
95_A	250_A	1.045	1.00
62_A	66_A	1.036	1.00
219_R	223_N	1.034	1.00
121_L	125_D	1.033	1.00
343_R	381_V	1.030	1.00
305_K	318_S	1.025	1.00
113_N	136_S	1.025	1.00
28_E	85_T	1.023	1.00
300_N	368_A	1.016	1.00
70_Y	85_T	1.011	1.00
108_S	111_T	1.009	1.00
334_K	349_S	1.007	1.00
298_W	301_T	1.006	1.00
372_K	376_D	1.005	1.00
176_T	192_I	0.999	1.00
94_L	248_Y	0.997	1.00
345_V	378_A	0.996	1.00
336_F	386_A	0.994	1.00
162_V	165_K	0.991	1.00
100_T	250_A	0.990	1.00
278_A	282_E	0.987	1.00
252_S	255_L	0.983	1.00
340_L	381_V	0.983	1.00
100_T	251_G	0.981	1.00
345_V	381_V	0.975	1.00
334_K	351_V	0.970	1.00
157_S	161_R	0.967	1.00
111_T	269_S	0.964	1.00
100_T	234_Q	0.963	1.00
63_A	279_A	0.958	0.99
352_F	360_A	0.955	0.99
161_R	165_K	0.951	0.99
129_S	141_I	0.950	0.99
90_L	277_T	0.949	0.99
155_N	158_D	0.941	0.99
333_A	360_A	0.941	0.99
275_A	279_A	0.941	0.99
33_P	374_E	0.938	0.99
86_M	277_T	0.938	0.99
117_L	121_L	0.934	0.99
87_H	277_T	0.933	0.99
325_I	364_T	0.932	0.99
173_L	202_F	0.929	0.99
327_I	332_V	0.929	0.99
61_N	64_Q	0.925	0.99
102_A	260_R	0.924	0.99
217_N	288_L	0.924	0.99
186_I	225_F	0.920	0.99
59_L	279_A	0.920	0.99
292_E	296_R	0.919	0.99
90_L	280_C	0.919	0.99
182_M	350_I	0.919	0.99
43_I	374_E	0.917	0.99
52_G	369_E	0.916	0.99
282_E	286_V	0.915	0.99
126_I	169_Y	0.911	0.99
204_M	235_V	0.908	0.99
194_E	198_K	0.907	0.99
88_Q	102_A	0.907	0.99
366_I	375_L	0.907	0.99
76_S	80_I	0.904	0.99
132_L	183_D	0.903	0.99
176_T	189_L	0.901	0.99
273_P	276_V	0.898	0.99
211_S	248_Y	0.896	0.99
58_R	61_N	0.895	0.99
242_I	287_L	0.895	0.99
186_I	214_L	0.893	0.99
78_R	91_E	0.893	0.99
328_G	360_A	0.889	0.99
296_R	299_E	0.887	0.99
159_L	192_I	0.887	0.99
135_A	139_D	0.886	0.99
56_H	59_L	0.883	0.99
333_A	349_S	0.882	0.99
46_S	348_Q	0.882	0.99
125_D	170_R	0.882	0.99
335_Q	338_D	0.881	0.99
307_M	311_M	0.879	0.99
367_T	370_H	0.879	0.99
97_F	284_I	0.877	0.99
45_L	375_L	0.876	0.99
196_A	201_A	0.870	0.99
258_Y	262_K	0.868	0.99
162_V	166_S	0.867	0.99
132_L	361_R	0.865	0.99
193_V	230_R	0.863	0.99
187_A	192_I	0.862	0.99
296_R	372_K	0.861	0.99
129_S	150_V	0.861	0.99
83_T	87_H	0.859	0.99
374_E	377_Q	0.858	0.99
223_N	291_P	0.851	0.99
190_P	224_H	0.848	0.99
221_T	225_F	0.848	0.99
62_A	278_A	0.848	0.99
125_D	173_L	0.846	0.99
67_V	275_A	0.842	0.99
107_Q	245_L	0.840	0.99
239_S	247_G	0.838	0.99
217_N	291_P	0.837	0.99
89_E	93_K	0.832	0.99
43_I	345_V	0.829	0.99
214_L	320_T	0.828	0.98
128_I	159_L	0.828	0.98
178_G	207_D	0.826	0.98
301_T	323_L	0.825	0.98
245_L	272_H	0.824	0.98
307_M	380_D	0.824	0.98
63_A	67_V	0.823	0.98
233_I	255_L	0.822	0.98
380_D	384_K	0.820	0.98
128_I	192_I	0.819	0.98
222_V	234_Q	0.817	0.98
131_E	150_V	0.815	0.98
151_Y	159_L	0.814	0.98
179_V	186_I	0.813	0.98
122_S	125_D	0.813	0.98
298_W	302_A	0.812	0.98
186_I	320_T	0.812	0.98
124_E	147_D	0.811	0.98
157_S	191_D	0.810	0.98
297_L	301_T	0.808	0.98
62_A	282_E	0.806	0.98
114_Q	265_P	0.804	0.98
56_H	293_H	0.804	0.98
249_A	259_L	0.800	0.98
378_A	382_I	0.798	0.98
222_V	231_V	0.797	0.98
27_L	35_V	0.797	0.98
186_I	224_H	0.794	0.98
123_K	145_K	0.793	0.98
66_A	86_M	0.791	0.98
304_F	323_L	0.791	0.98
156_M	192_I	0.787	0.98
46_S	81_A	0.786	0.98
166_S	172_R	0.784	0.98
236_G	250_A	0.784	0.98
296_R	371_T	0.783	0.98
63_A	72_A	0.781	0.98
117_L	204_M	0.780	0.98
117_L	173_L	0.780	0.98
377_Q	380_D	0.778	0.98
154_V	177_D	0.775	0.98
335_Q	339_Q	0.769	0.98
53_F	293_H	0.767	0.98
343_R	385_T	0.765	0.97
372_K	375_L	0.763	0.97
161_R	164_R	0.759	0.97
138_I	142_R	0.757	0.97
128_I	149_K	0.755	0.97
325_I	382_I	0.754	0.97
129_S	138_I	0.753	0.97
129_S	148_K	0.752	0.97
341_L	346_F	0.749	0.97
58_R	290_E	0.748	0.97
210_A	221_T	0.745	0.97
133_N	177_D	0.745	0.97
112_T	116_V	0.742	0.97
215_G	220_G	0.742	0.97
55_S	60_I	0.741	0.97
78_R	266_F	0.740	0.97
50_Y	209_H	0.738	0.97
311_M	380_D	0.738	0.97
110_F	114_Q	0.737	0.97
211_S	236_G	0.734	0.97
104_L	256_I	0.732	0.97
293_H	296_R	0.732	0.97
87_H	105_V	0.731	0.97
90_L	281_M	0.731	0.97
157_S	160_E	0.729	0.97
28_E	36_T	0.727	0.97
160_E	191_D	0.726	0.97
294_M	298_W	0.726	0.97
364_T	382_I	0.725	0.97
154_V	185_N	0.724	0.96
316_T	326_L	0.724	0.96
112_T	235_V	0.722	0.96
272_H	277_T	0.718	0.96
309_V	315_L	0.718	0.96
104_L	260_R	0.716	0.96
380_D	383_E	0.715	0.96
84_F	87_H	0.705	0.96
215_G	218_G	0.703	0.96
189_L	205_V	0.702	0.96
114_Q	118_S	0.700	0.96
305_K	323_L	0.699	0.96
172_R	201_A	0.695	0.96
86_M	89_E	0.693	0.96
66_A	70_Y	0.690	0.95
299_E	303_Y	0.690	0.95
106_F	115_G	0.690	0.95
116_V	235_V	0.690	0.95
67_V	72_A	0.685	0.95
156_M	159_L	0.685	0.95
54_T	75_G	0.684	0.95
106_F	249_A	0.684	0.95
237_T	247_G	0.682	0.95
154_V	180_F	0.675	0.95
57_P	60_I	0.672	0.95
34_S	37_V	0.670	0.95
43_I	377_Q	0.669	0.95
89_E	285_D	0.669	0.95
80_I	348_Q	0.669	0.95
308_L	382_I	0.667	0.94
163_L	199_Y	0.664	0.94
179_V	210_A	0.659	0.94
98_K	284_I	0.658	0.94
63_A	278_A	0.652	0.94
314_T	328_G	0.649	0.94
379_L	383_E	0.648	0.94
196_A	232_H	0.647	0.94
103_A	248_Y	0.647	0.94
233_I	251_G	0.646	0.94
283_A	287_L	0.645	0.93
216_E	291_P	0.645	0.93
336_F	362_I	0.645	0.93
308_L	364_T	0.643	0.93
147_D	170_R	0.642	0.93
292_E	295_E	0.642	0.93
54_T	243_G	0.641	0.93
151_Y	154_V	0.638	0.93
126_I	172_R	0.635	0.93
214_L	224_H	0.635	0.93
40_Q	344_G	0.635	0.93
336_F	340_L	0.629	0.93
313_L	382_I	0.629	0.93
193_V	227_L	0.629	0.93
125_D	144_T	0.628	0.93
99_K	228_D	0.627	0.92
285_D	289_E	0.625	0.92
350_I	354_T	0.625	0.92
212_G	241_A	0.624	0.92
59_L	283_A	0.622	0.92
104_L	266_F	0.622	0.92
179_V	320_T	0.622	0.92
97_F	288_L	0.621	0.92
93_K	284_I	0.619	0.92
245_L	276_V	0.619	0.92
80_I	350_I	0.618	0.92
121_L	204_M	0.618	0.92
74_T	274_P	0.618	0.92
52_G	367_T	0.617	0.92
107_Q	111_T	0.617	0.92
373_D	377_Q	0.616	0.92
287_L	294_M	0.616	0.92
205_V	222_V	0.616	0.92
92_K	102_A	0.615	0.92
97_F	287_L	0.613	0.92
207_D	234_Q	0.610	0.91
101_E	252_S	0.610	0.91
151_Y	174_I	0.610	0.91
129_S	137_I	0.609	0.91
216_E	224_H	0.609	0.91
300_N	366_I	0.609	0.91
117_L	137_I	0.608	0.91
49_N	54_T	0.604	0.91
130_D	153_H	0.603	0.91
98_K	103_A	0.603	0.91
108_S	245_L	0.602	0.91
376_D	379_L	0.602	0.91
70_Y	86_M	0.600	0.91
256_I	260_R	0.599	0.91
219_R	288_L	0.597	0.91
332_V	335_Q	0.593	0.90
296_R	368_A	0.593	0.90
149_K	165_K	0.593	0.90
114_Q	140_G	0.592	0.90
216_E	295_E	0.591	0.90
78_R	269_S	0.591	0.90
306_A	309_V	0.591	0.90
172_R	200_D	0.590	0.90
190_P	194_E	0.589	0.90
163_L	172_R	0.588	0.90
305_K	319_E	0.587	0.90
179_V	214_L	0.587	0.90
224_H	319_E	0.587	0.90
270_T	354_T	0.587	0.90
204_M	233_I	0.586	0.90
87_H	271_S	0.584	0.90
279_A	283_A	0.584	0.90
337_S	349_S	0.584	0.90
326_L	361_R	0.582	0.89
100_T	252_S	0.581	0.89
89_E	92_K	0.581	0.89
307_M	383_E	0.580	0.89
30_M	33_P	0.578	0.89
131_E	359_K	0.576	0.89
154_V	176_T	0.576	0.89
209_H	240_K	0.576	0.89
149_K	166_S	0.575	0.89
239_S	270_T	0.574	0.89
34_S	377_Q	0.573	0.89
120_I	233_I	0.572	0.89
71_G	275_A	0.571	0.89
379_L	382_I	0.571	0.89
194_E	197_E	0.571	0.89
171_M	202_F	0.571	0.89
131_E	148_K	0.570	0.88
138_I	150_V	0.566	0.88
222_V	228_D	0.564	0.88
218_G	294_M	0.563	0.88
303_Y	379_L	0.563	0.88
43_I	378_A	0.561	0.88
26_Q	85_T	0.559	0.87
327_I	333_A	0.558	0.87
304_F	307_M	0.554	0.87
139_D	142_R	0.554	0.87
98_K	248_Y	0.553	0.87
30_M	55_S	0.553	0.87
178_G	214_L	0.552	0.87
305_K	309_V	0.552	0.87
244_V	279_A	0.552	0.87
169_Y	172_R	0.551	0.87
133_N	141_I	0.551	0.87
337_S	341_L	0.551	0.87
134_H	240_K	0.550	0.87
116_V	233_I	0.549	0.87
152_Q	161_R	0.548	0.86
156_M	160_E	0.547	0.86
186_I	221_T	0.546	0.86
133_N	180_F	0.544	0.86
121_L	146_A	0.542	0.86
97_F	211_S	0.542	0.86
235_V	247_G	0.541	0.86
330_E	357_K	0.540	0.86
107_Q	247_G	0.539	0.86
93_K	96_A	0.538	0.85
166_S	169_Y	0.538	0.85
268_F	354_T	0.538	0.85
53_F	286_V	0.537	0.85
53_F	59_L	0.537	0.85
115_G	119_S	0.536	0.85
308_L	379_L	0.536	0.85
134_H	209_H	0.536	0.85
244_V	276_V	0.536	0.85
98_K	234_Q	0.535	0.85
329_D	333_A	0.535	0.85
63_A	66_A	0.535	0.85
293_H	300_N	0.535	0.85
193_V	196_A	0.534	0.85
291_P	294_M	0.534	0.85
213_V	297_L	0.533	0.85
35_V	44_Q	0.533	0.85
125_D	171_M	0.532	0.85
63_A	275_A	0.532	0.85
62_A	65_E	0.531	0.85
334_K	338_D	0.529	0.85
42_V	346_F	0.527	0.84
318_S	323_L	0.524	0.84
214_L	221_T	0.524	0.84
313_L	336_F	0.524	0.84
107_Q	272_H	0.521	0.84
77_V	109_G	0.519	0.83
167_M	200_D	0.519	0.83
297_L	300_N	0.517	0.83
40_Q	342_S	0.515	0.83
127_V	144_T	0.515	0.83
197_E	232_H	0.515	0.83
299_E	302_A	0.515	0.83
32_G	55_S	0.514	0.83
69_Q	89_E	0.513	0.83
151_Y	177_D	0.513	0.83
336_F	339_Q	0.512	0.83
185_N	361_R	0.512	0.83
202_F	232_H	0.512	0.83
197_E	231_V	0.511	0.82
286_V	293_H	0.511	0.82
203_V	231_V	0.510	0.82
214_L	298_W	0.509	0.82
351_V	354_T	0.509	0.82
157_S	164_R	0.509	0.82
340_L	347_A	0.508	0.82
202_F	255_L	0.508	0.82
29_S	36_T	0.506	0.82
66_A	69_Q	0.504	0.82
134_H	181_S	0.502	0.81
328_G	333_A	0.502	0.81
376_D	380_D	0.501	0.81
304_F	378_A	0.500	0.81

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2w8tA	2	1	100	0.453	Contact Map
3wy7A	2	0.9439	100	0.469	Contact Map
2bwnA	2	0.9872	100	0.506	Contact Map
3kkiA	2	0.9668	100	0.508	Contact Map
1fc4A	2	1	100	0.514	Contact Map
1bs0A	2	0.9694	100	0.521	Contact Map
3tqxA	2	1	100	0.528	Contact Map
3a2bA	2	0.9898	100	0.532	Contact Map
4iw7A	2	0.8469	100	0.563	Contact Map
1vefA	2	0.8929	100	0.657	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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