GREMLIN Database
RNY - Ribonuclease Y
UniProt: O31774 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 520 (507)
Sequences: 1429 (802)
Seq/√Len: 35.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
390_A403_I8.3731.00
143_E146_R6.2431.00
350_M419_L5.3881.00
242_I257_G4.5721.00
455_Y494_R3.7671.00
360_L399_V3.7471.00
269_A288_V3.7231.00
480_N483_E3.5571.00
167_L171_I3.3871.00
453_E461_S3.3781.00
14_I17_G3.1281.00
235_T239_L3.0901.00
414_S417_A3.0841.00
171_I178_T2.9681.00
161_E164_E2.9581.00
364_A402_S2.9491.00
404_A410_E2.9341.00
352_S358_A2.8821.00
307_T315_L2.8351.00
494_R498_E2.8351.00
356_E416_I2.7851.00
138_R142_S2.7691.00
181_R185_E2.7461.00
387_V400_I2.7401.00
39_A42_Q2.7101.00
363_R395_E2.7071.00
307_T320_I2.5841.00
383_V387_V2.5411.00
302_M327_K2.5121.00
398_V401_N2.5021.00
13_L17_G2.4891.00
310_V344_A2.4581.00
157_Q161_E2.4151.00
167_L178_T2.4021.00
347_A419_L2.3981.00
213_V252_A2.3300.99
139_M143_E2.3280.99
413_T417_A2.2950.99
182_A186_A2.2810.99
358_A362_K2.2500.99
489_R517_E2.2380.99
160_L167_L2.2140.99
45_E48_K2.1960.99
479_I487_L2.1770.99
269_A291_S2.1560.99
401_N405_S2.1490.99
310_V323_L2.1450.99
346_L350_M2.1440.99
135_E139_M2.1330.99
25_R30_E2.1170.99
179_E189_K2.1080.99
198_L422_A2.1080.99
287_M291_S2.0940.99
163_V167_L2.0850.99
67_H70_R2.0830.99
456_E478_S2.0820.99
387_V404_A2.0660.99
374_I389_L2.0460.99
128_E131_S2.0280.98
163_V171_I2.0250.98
378_V385_I2.0210.98
66_I73_A2.0050.98
66_I69_L1.9670.98
26_K30_E1.9570.98
264_E267_R1.9540.98
239_L288_V1.9150.98
316_H393_Y1.9130.98
385_I388_E1.8540.97
398_V414_S1.8540.97
323_L336_V1.8470.97
480_N486_R1.8370.97
298_Y327_K1.8320.97
69_L73_A1.8150.97
206_V429_A1.8130.97
315_L367_L1.7610.96
356_E415_I1.7570.96
272_K291_S1.7430.96
42_Q46_D1.7220.96
21_G25_R1.7150.96
289_E292_R1.7140.96
323_L366_L1.7130.96
161_E165_N1.7100.96
168_S178_T1.7090.96
447_K450_E1.7070.96
305_Q309_E1.7010.95
383_V409_D1.6840.95
383_V400_I1.6810.95
268_I291_S1.6650.95
302_M306_T1.6620.95
154_E157_Q1.6610.95
159_I163_V1.6590.95
193_I350_M1.6550.95
302_M305_Q1.6510.95
136_M140_Q1.6420.94
46_D50_D1.6290.94
73_A77_V1.6280.94
326_L336_V1.6220.94
10_S13_L1.6160.94
472_I491_I1.5940.94
128_E132_K1.5900.93
40_A43_I1.5820.93
9_I13_L1.5810.93
401_N417_A1.5800.93
150_L158_I1.5770.93
343_V365_G1.5590.93
55_K59_L1.5520.93
384_E388_E1.5400.92
482_L486_R1.5390.92
381_S384_E1.5340.92
472_I505_I1.5220.92
102_H105_I1.5100.92
62_A66_I1.4950.91
306_T310_V1.4770.91
90_R99_D1.4720.90
350_M354_L1.4630.90
185_E189_K1.4550.90
272_K294_E1.4520.90
134_D137_I1.4350.89
484_A509_V1.4220.89
175_T486_R1.4220.89
129_M132_K1.4050.88
326_L373_A1.4040.88
25_R37_R1.4030.88
384_E387_V1.4020.88
295_V302_M1.3950.88
265_T292_R1.3800.87
174_M182_A1.3790.87
384_E409_D1.3740.87
189_K192_N1.3600.87
65_E68_K1.3580.86
387_V391_T1.3550.86
54_L58_A1.3550.86
61_E68_K1.3520.86
180_N184_E1.3480.86
132_K135_E1.3400.86
401_N404_A1.3380.86
80_R84_L1.3350.86
302_M328_F1.3300.85
166_E493_K1.3270.85
114_K118_S1.3250.85
401_N414_S1.3170.85
140_Q147_I1.3130.85
188_K301_E1.3100.84
41_E45_E1.3090.84
192_N196_L1.3040.84
200_R349_L1.3020.84
151_T154_E1.3020.84
356_E401_N1.2820.83
37_R41_E1.2820.83
361_A365_G1.2660.82
186_A194_L1.2650.82
43_I47_A1.2560.82
18_L22_Y1.2540.82
401_N410_E1.2540.82
461_S472_I1.2490.81
140_Q162_R1.2440.81
195_S422_A1.2400.81
129_M134_D1.2330.81
214_V270_L1.2310.80
322_I393_Y1.2250.80
374_I378_V1.2230.80
168_S181_R1.2220.80
486_R490_D1.2200.80
426_L429_A1.2200.80
400_I404_A1.2160.80
28_I32_K1.2120.79
310_V341_M1.2100.79
133_V136_M1.2080.79
17_G21_G1.2080.79
347_A416_I1.2060.79
475_K478_S1.1920.78
132_K137_I1.1810.78
454_S494_R1.1770.77
360_L401_N1.1770.77
88_E92_L1.1740.77
102_H106_D1.1730.77
164_E174_M1.1720.77
198_L426_L1.1620.76
194_L198_L1.1540.76
127_E131_S1.1530.76
398_V416_I1.1450.75
341_M345_F1.1440.75
48_K54_L1.1420.75
137_I141_Q1.1390.75
298_Y302_M1.1340.75
38_G41_E1.1330.75
59_L65_E1.1280.74
446_E450_E1.1280.74
208_E439_E1.1260.74
195_S415_I1.1240.74
139_M142_S1.1200.74
159_I504_H1.1180.74
167_L174_M1.1170.74
452_S499_L1.1170.74
224_R255_L1.1140.73
350_M422_A1.1130.73
405_S421_A1.1120.73
209_T259_D1.1060.73
190_A194_L1.1050.73
27_T31_A1.1050.73
194_L350_M1.1040.73
261_I299_I1.1030.73
373_A376_H1.0950.72
307_T312_V1.0810.71
310_V315_L1.0800.71
298_Y328_F1.0770.71
228_R248_D1.0760.71
405_S417_A1.0720.70
315_L323_L1.0690.70
179_E183_K1.0630.70
44_L47_A1.0600.70
215_N254_I1.0580.69
134_D138_R1.0580.69
408_G411_E1.0550.69
167_L175_T1.0520.69
493_K497_D1.0470.69
137_I140_Q1.0460.68
295_V298_Y1.0440.68
242_I255_L1.0430.68
46_D473_M1.0430.68
274_V323_L1.0370.68
447_K498_E1.0320.67
132_K139_M1.0300.67
177_E181_R1.0280.67
140_Q143_E1.0210.67
381_S416_I1.0180.66
214_V217_P1.0180.66
46_D49_R1.0170.66
22_Y25_R1.0150.66
56_K60_L1.0140.66
321_K393_Y1.0120.66
340_S343_V1.0110.66
495_I507_V1.0100.66
435_S492_R1.0020.65
158_I162_R1.0010.65
453_E460_K0.9890.64
182_A194_L0.9870.64
282_A464_I0.9850.64
269_A287_M0.9850.64
303_G366_L0.9840.64
383_V417_A0.9800.63
18_L21_G0.9790.63
261_I295_V0.9770.63
28_I31_A0.9710.63
41_E48_K0.9700.63
301_E305_Q0.9670.62
176_K482_L0.9670.62
156_K159_I0.9650.62
25_R29_A0.9640.62
296_D321_K0.9620.62
483_E486_R0.9570.61
254_I257_G0.9560.61
350_M426_L0.9550.61
236_L244_L0.9530.61
240_T288_V0.9530.61
60_L63_K0.9520.61
205_H257_G0.9510.61
209_T426_L0.9460.61
330_T336_V0.9450.60
88_E99_D0.9440.60
194_L426_L0.9430.60
360_L416_I0.9410.60
168_S171_I0.9410.60
141_Q145_E0.9350.60
401_N413_T0.9350.60
175_T182_A0.9320.59
288_V292_R0.9290.59
9_I12_L0.9230.59
319_L389_L0.9220.59
360_L398_V0.9210.58
364_A416_I0.9140.58
167_L170_D0.9140.58
225_I270_L0.9130.58
488_A508_T0.9130.58
169_H482_L0.9090.57
222_K250_P0.9090.57
326_L416_I0.9080.57
312_V315_L0.9060.57
21_G28_I0.9050.57
372_K424_D0.9050.57
405_S410_E0.9040.57
290_K411_E0.9030.57
445_L465_Q0.9020.57
57_E60_L0.9020.57
272_K461_S0.9020.57
336_V373_A0.9000.57
57_E63_K0.8990.57
307_T313_H0.8970.56
346_L438_L0.8940.56
36_A40_A0.8920.56
12_L23_F0.8890.56
45_E49_R0.8860.56
322_I374_I0.8860.56
184_E300_R0.8820.55
373_A380_G0.8790.55
59_L84_L0.8790.55
394_K461_S0.8780.55
331_S424_D0.8780.55
397_P413_T0.8750.55
322_I389_L0.8720.54
178_T182_A0.8720.54
303_G320_I0.8710.54
86_K89_N0.8690.54
295_V299_I0.8690.54
381_S409_D0.8690.54
253_V437_T0.8670.54
103_E107_K0.8670.54
405_S414_S0.8640.54
402_S405_S0.8590.53
19_V24_V0.8580.53
196_L349_L0.8570.53
268_I295_V0.8570.53
195_S205_H0.8550.53
400_I413_T0.8550.53
360_L396_H0.8540.53
33_I36_A0.8490.52
291_S295_V0.8470.52
25_R28_I0.8460.52
80_R88_E0.8450.52
239_L269_A0.8430.52
452_S470_V0.8410.52
178_T186_A0.8410.52
171_I182_A0.8390.51
206_V216_L0.8380.51
167_L489_R0.8370.51
142_S151_T0.8320.51
236_L270_L0.8280.51
387_V410_E0.8260.50
410_E421_A0.8250.50
224_R276_D0.8220.50
150_L159_I0.8220.50
55_K61_E0.8210.50
310_V345_F0.8190.50
172_A485_H0.8190.50
416_I492_R0.8180.50
354_L462_F0.8160.49
33_I37_R0.8150.49
129_M137_I0.8140.49
168_S486_R0.8140.49
415_I419_L0.8100.49
177_E499_L0.8100.49
407_H434_R0.8090.49
391_T446_E0.8080.49
347_A365_G0.8080.49
94_K101_K0.8070.49
224_R277_G0.8050.49
299_I506_K0.8020.48
160_L163_V0.7980.48
401_N416_I0.7950.48
352_S381_S0.7950.48
212_S264_E0.7940.48
316_H436_E0.7940.48
78_R481_D0.7910.47
50_D148_S0.7900.47
36_A43_I0.7900.47
107_K111_M0.7890.47
130_E134_D0.7890.47
261_I288_V0.7890.47
90_R94_K0.7880.47
331_S407_H0.7880.47
88_E109_E0.7870.47
19_V23_F0.7870.47
309_E341_M0.7850.47
159_I392_K0.7850.47
483_E490_D0.7840.47
29_A35_G0.7820.47
25_R35_G0.7810.46
421_A426_L0.7800.46
156_K163_V0.7800.46
65_E70_R0.7790.46
287_M500_D0.7790.46
77_V81_R0.7790.46
228_R465_Q0.7740.46
67_H71_I0.7730.46
384_E404_A0.7730.46
407_H424_D0.7720.46
346_L481_D0.7710.46
12_L45_E0.7710.46
136_M218_N0.7660.45
34_A392_K0.7640.45
7_V10_S0.7600.45
151_T188_K0.7600.45
29_A37_R0.7600.45
133_V140_Q0.7580.44
110_A114_K0.7550.44
18_L24_V0.7530.44
187_D191_K0.7520.44
373_A470_V0.7510.44
72_D78_R0.7500.44
268_I298_Y0.7500.44
418_V421_A0.7490.44
164_E171_I0.7480.44
383_V394_K0.7480.44
394_K475_K0.7430.43
90_R93_Q0.7430.43
12_L487_L0.7410.43
64_D67_H0.7390.43
145_E159_I0.7380.43
141_Q162_R0.7370.43
147_I325_R0.7360.43
131_S135_E0.7350.43
201_C349_L0.7350.43
236_L257_G0.7330.42
111_M114_K0.7330.42
246_I405_S0.7320.42
159_I327_K0.7320.42
239_L291_S0.7310.42
400_I417_A0.7300.42
112_L156_K0.7290.42
388_E391_T0.7280.42
68_K72_D0.7280.42
383_V421_A0.7270.42
183_K520_K0.7270.42
461_S473_M0.7250.42
292_R296_D0.7250.42
383_V408_G0.7240.42
17_G41_E0.7230.42
481_D511_R0.7230.42
28_I146_R0.7220.41
367_L403_I0.7220.41
469_E501_Y0.7200.41
191_K356_E0.7190.41
382_H407_H0.7180.41
295_V327_K0.7170.41
496_E501_Y0.7170.41
89_N93_Q0.7160.41
306_T328_F0.7150.41
274_V453_E0.7140.41
501_Y519_A0.7130.41
390_A400_I0.7130.41
40_A44_L0.7120.41
167_L182_A0.7110.41
17_G20_V0.7110.41
441_Y445_L0.7070.40
133_V137_I0.7070.40
160_L164_E0.7060.40
79_E93_Q0.7060.40
336_V340_S0.7050.40
356_E492_R0.7050.40
31_A35_G0.7050.40
345_F376_H0.7030.40
288_V464_I0.7030.40
192_N409_D0.7020.40
133_V181_R0.6980.39
88_E94_K0.6980.39
153_D352_S0.6960.39
245_I248_D0.6950.39
65_E69_L0.6940.39
191_K358_A0.6920.39
286_E514_R0.6920.39
82_N86_K0.6920.39
277_G281_P0.6890.39
402_S417_A0.6880.39
369_D382_H0.6880.39
24_V28_I0.6870.39
145_E152_R0.6870.39
170_D493_K0.6870.39
347_A420_V0.6860.38
170_D489_R0.6860.38
171_I186_A0.6850.38
127_E374_I0.6850.38
201_C205_H0.6850.38
10_S265_T0.6820.38
53_A60_L0.6820.38
152_R167_L0.6810.38
115_K398_V0.6800.38
16_L19_V0.6790.38
74_E77_V0.6790.38
99_D102_H0.6780.38
204_D274_V0.6780.38
135_E138_R0.6760.38
282_A429_A0.6750.38
325_R377_E0.6750.38
137_I479_I0.6730.37
54_L357_D0.6730.37
157_Q483_E0.6730.37
222_K249_T0.6720.37
464_I501_Y0.6710.37
412_P417_A0.6700.37
261_I492_R0.6700.37
82_N85_Q0.6690.37
375_D417_A0.6680.37
222_K231_R0.6670.37
259_D315_L0.6660.37
187_D297_D0.6660.37
352_S362_K0.6650.37
14_I18_L0.6640.37
347_A356_E0.6630.37
89_N191_K0.6630.37
369_D407_H0.6610.36
395_E399_V0.6580.36
283_R514_R0.6560.36
344_A361_A0.6540.36
390_A404_A0.6530.36
253_V418_V0.6520.36
229_E286_E0.6510.36
244_L489_R0.6510.36
151_T412_P0.6500.36
111_M116_D0.6490.35
272_K505_I0.6480.35
487_L492_R0.6480.35
490_D493_K0.6460.35
138_R141_Q0.6440.35
103_E219_D0.6430.35
243_D409_D0.6420.35
425_A428_A0.6400.35
19_V22_Y0.6390.35
488_A517_E0.6380.35
204_D290_K0.6370.35
403_I421_A0.6360.34
170_D472_I0.6350.34
113_E116_D0.6350.34
50_D55_K0.6350.34
48_K52_E0.6330.34
157_Q265_T0.6330.34
301_E510_I0.6320.34
346_L423_A0.6310.34
201_C426_L0.6300.34
260_P465_Q0.6300.34
156_K505_I0.6300.34
14_I462_F0.6290.34
62_A360_L0.6290.34
231_R514_R0.6280.34
30_E34_A0.6270.34
459_E475_K0.6270.34
347_A350_M0.6260.34
254_I499_L0.6260.34
456_E483_E0.6260.34
175_T489_R0.6260.34
278_R281_P0.6260.34
387_V403_I0.6260.34
203_A209_T0.6260.34
23_F265_T0.6220.33
107_K127_E0.6200.33
150_L253_V0.6180.33
217_P221_M0.6170.33
328_F358_A0.6170.33
272_K287_M0.6170.33
239_L336_V0.6150.33
199_Q260_P0.6150.33
356_E398_V0.6150.33
39_A130_E0.6120.33
403_I410_E0.6120.33
505_I508_T0.6120.33
399_V416_I0.6120.33
128_E134_D0.6110.33
452_S461_S0.6100.32
325_R383_V0.6090.32
383_V405_S0.6090.32
84_L200_R0.6090.32
276_D281_P0.6060.32
247_D250_P0.6040.32
162_R166_E0.6040.32
174_M253_V0.6040.32
139_M357_D0.6030.32
296_D383_V0.6020.32
11_I16_L0.5990.32
339_H382_H0.5990.32
135_E183_K0.5990.32
168_S483_E0.5980.32
216_L438_L0.5970.31
375_D385_I0.5950.31
390_A421_A0.5950.31
33_I193_I0.5940.31
188_K199_Q0.5920.31
205_H209_T0.5920.31
441_Y448_L0.5920.31
9_I27_T0.5910.31
240_T466_A0.5910.31
7_V153_D0.5890.31
306_T344_A0.5880.31
342_E505_I0.5880.31
451_I494_R0.5870.31
268_I272_K0.5840.30
205_H210_T0.5840.30
418_V508_T0.5830.30
26_K36_A0.5830.30
261_I267_R0.5830.30
135_E142_S0.5820.30
205_H464_I0.5820.30
106_D166_E0.5820.30
383_V404_A0.5820.30
106_D115_K0.5820.30
339_H369_D0.5810.30
448_L505_I0.5810.30
191_K473_M0.5800.30
116_D300_R0.5800.30
53_A57_E0.5780.30
169_H173_I0.5780.30
400_I409_D0.5770.30
225_I514_R0.5760.30
152_R405_S0.5750.30
159_I384_E0.5750.30
219_D251_E0.5750.30
28_I307_T0.5730.30
257_G374_I0.5720.30
182_A293_R0.5720.30
462_F473_M0.5700.29
20_V394_K0.5700.29
87_Q95_E0.5690.29
246_I306_T0.5690.29
333_G411_E0.5670.29
479_I516_V0.5660.29
246_I377_E0.5660.29
152_R160_L0.5660.29
171_I486_R0.5640.29
136_M139_M0.5640.29
381_S507_V0.5630.29
496_E499_L0.5630.29
228_R504_H0.5620.29
180_N478_S0.5620.29
160_L171_I0.5620.29
197_A422_A0.5620.29
106_D109_E0.5620.29
14_I138_R0.5610.29
343_V428_A0.5610.29
165_N312_V0.5590.29
92_L246_I0.5580.29
308_F426_L0.5580.29
132_K454_S0.5570.29
253_V438_L0.5570.29
86_K94_K0.5560.28
188_K257_G0.5560.28
223_G226_I0.5560.28
172_A207_A0.5540.28
435_S440_N0.5540.28
319_L322_I0.5540.28
49_R148_S0.5540.28
219_D235_T0.5540.28
265_T295_V0.5540.28
203_A376_H0.5530.28
278_R286_E0.5520.28
32_K39_A0.5520.28
192_N269_A0.5520.28
242_I296_D0.5510.28
10_S456_E0.5500.28
25_R42_Q0.5500.28
201_C376_H0.5500.28
424_D434_R0.5500.28
14_I149_S0.5490.28
88_E107_K0.5490.28
11_I46_D0.5490.28
436_E441_Y0.5480.28
7_V16_L0.5470.28
319_L391_T0.5460.28
316_H435_S0.5450.28
117_H129_M0.5450.28
336_V428_A0.5440.28
10_S19_V0.5440.28
246_I459_E0.5440.28
276_D512_E0.5430.28
216_L221_M0.5430.28
160_L174_M0.5430.28
100_R104_G0.5430.28
51_A393_Y0.5410.27
127_E130_E0.5410.27
13_L18_L0.5410.27
408_G412_P0.5390.27
192_N488_A0.5380.27
25_R31_A0.5380.27
206_V212_S0.5380.27
448_L470_V0.5370.27
136_M148_S0.5370.27
356_E405_S0.5370.27
132_K140_Q0.5370.27
22_Y176_K0.5350.27
231_R250_P0.5350.27
13_L29_A0.5350.27
402_S416_I0.5350.27
283_R287_M0.5340.27
231_R256_S0.5330.27
81_R346_L0.5330.27
186_A200_R0.5320.27
35_G38_G0.5310.27
375_D380_G0.5310.27
62_A211_V0.5310.27
257_G481_D0.5310.27
170_D293_R0.5310.27
336_V341_M0.5310.27
405_S492_R0.5310.27
228_R280_H0.5310.27
318_D322_I0.5300.27
70_R520_K0.5300.27
166_E513_T0.5300.27
153_D157_Q0.5300.27
399_V510_I0.5290.27
73_A480_N0.5290.27
406_H434_R0.5290.27
496_E505_I0.5280.27
488_A509_V0.5280.27
145_E153_D0.5280.27
166_E328_F0.5270.26
323_L349_L0.5270.26
340_S365_G0.5260.26
401_N408_G0.5260.26
326_L330_T0.5250.26
13_L21_G0.5240.26
328_F500_D0.5230.26
93_Q238_T0.5230.26
383_V410_E0.5220.26
77_V84_L0.5220.26
253_V336_V0.5220.26
389_L398_V0.5220.26
384_E428_A0.5220.26
343_V455_Y0.5220.26
214_V225_I0.5210.26
303_G375_D0.5210.26
52_E252_A0.5210.26
389_L509_V0.5210.26
485_H517_E0.5200.26
369_D434_R0.5190.26
105_I425_A0.5190.26
236_L288_V0.5190.26
24_V39_A0.5180.26
55_K58_A0.5170.26
250_P277_G0.5170.26
26_K31_A0.5170.26
93_Q96_E0.5160.26
210_T246_I0.5160.26
60_L67_H0.5150.26
229_E240_T0.5150.26
143_E253_V0.5150.26
236_L253_V0.5140.26
336_V414_S0.5130.26
210_T269_A0.5120.25
191_K325_R0.5120.25
83_E328_F0.5120.25
357_D458_V0.5120.25
401_N421_A0.5120.25
89_N106_D0.5120.25
12_L68_K0.5110.25
346_L458_V0.5110.25
396_H401_N0.5110.25
48_K64_D0.5110.25
304_E518_Y0.5100.25
226_I231_R0.5100.25
93_Q498_E0.5100.25
75_Q89_N0.5100.25
54_L59_L0.5090.25
186_A193_I0.5080.25
170_D261_I0.5080.25
267_R411_E0.5080.25
167_L244_L0.5080.25
16_L20_V0.5070.25
349_L358_A0.5070.25
460_K508_T0.5070.25
76_E81_R0.5070.25
262_R474_V0.5060.25
350_M392_K0.5060.25
437_T440_N0.5050.25
170_D244_L0.5050.25
258_F276_D0.5040.25
288_V309_E0.5040.25
116_D253_V0.5030.25
72_D114_K0.5030.25
282_A417_A0.5020.25
451_I486_R0.5010.25
203_A426_L0.5010.25
13_L218_N0.5010.25
472_I508_T0.5000.25
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4qqwA 2 0.3308 99.8 0.898 Contact Map
3kh1A 2 0.3212 99.8 0.902 Contact Map
2paqA 5 0.2808 99.8 0.904 Contact Map
4s1bA 2 0.3192 99.8 0.907 Contact Map
2ogiA 2 0.3135 99.7 0.91 Contact Map
2cqzA 5 0.2981 99.7 0.91 Contact Map
3m1tA 1 0.4423 99.7 0.911 Contact Map
2o08A 2 0.3115 99.7 0.911 Contact Map
3ccgA 2 0.3058 99.7 0.912 Contact Map
3ljxA 1 0.3712 99.7 0.913 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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