YMFH - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YMFH - Uncharacterized zinc protease YmfH

UniProt:	O31766	Sequences: MIKPIEYEQLQETLYHEKMSNGLDVYVLPKKGFNKTYAVFTTKYGSIDNRFVPLGKNEMVHVPDGIAHFLEHKLFEKADGDVFQDFSKQGASANAFTSFTRTAYLFSSTSNVERNLETLIDFVQDPYFTEKTVEKEKGIIGQEINMYDDNPDWRLYFGVIENMYKEHPVRIDIAGTVESISHITKDLLYECYETFYHPSNMLLFIVGPVDPEAIISQVRENQGKKPYTDQPEIKREEVKEQEAVFRKEKEIKMNVQGPKCLVGLKSKNPFKLGKELLKHELSMNLLLEALFGKSSAQYESLYEKGYIDETFSFDFTAEYGFGFAAIGGDTPEPDQLAEDISSMLLRAGELITAEKIELARKKKIGTFLKALNSPEYIANQFTRYAFLDMSLFDVVTVLEQITLEDVQNVIQEEIAADRLTVCKVVPKS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	428 (392)
Sequences:	14182 (10965)
Seq/√Len:	553.8

ECOLI - PTRA PQQL YHJJ
BACSU - YMFH ALBF YMFF YMXG

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
185_K	189_Y	4.364	1.00
343_M	346_R	4.052	1.00
353_A	357_E	4.019	1.00
346_R	349_E	3.703	1.00
130_E	134_E	3.451	1.00
296_A	355_K	3.247	1.00
402_T	405_D	3.114	1.00
332_E	335_Q	3.097	1.00
210_D	213_A	3.012	1.00
300_S	304_K	2.988	1.00
364_I	399_E	2.905	1.00
279_H	412_E	2.891	1.00
353_A	403_L	2.869	1.00
345_L	348_G	2.856	1.00
141_G	181_S	2.781	1.00
113_E	217_Q	2.765	1.00
405_D	408_N	2.747	1.00
79_D	125_D	2.727	1.00
27_V	209_V	2.660	1.00
186_D	190_E	2.656	1.00
159_V	263_G	2.597	1.00
63_P	187_L	2.522	1.00
287_L	312_S	2.515	1.00
215_I	219_R	2.277	1.00
205_I	214_I	2.265	1.00
20_S	219_R	2.263	1.00
190_E	194_T	2.261	1.00
289_A	351_I	2.246	1.00
121_D	125_D	2.196	1.00
339_D	342_S	2.190	1.00
286_L	410_I	2.137	1.00
403_L	407_Q	2.133	1.00
300_S	343_M	2.132	1.00
352_T	355_K	2.118	1.00
184_T	187_L	2.085	1.00
18_K	24_D	2.058	1.00
390_S	393_D	2.016	1.00
17_E	215_I	2.016	1.00
408_N	412_E	2.013	1.00
42_T	201_M	1.991	1.00
96_F	103_A	1.941	1.00
134_E	137_K	1.936	1.00
282_S	409_V	1.895	1.00
108_S	115_N	1.886	1.00
338_E	342_S	1.884	1.00
158_G	161_E	1.858	1.00
350_L	407_Q	1.854	1.00
216_S	220_E	1.828	1.00
40_F	203_L	1.827	1.00
357_E	360_R	1.815	1.00
177_V	181_S	1.808	1.00
141_G	177_V	1.805	1.00
279_H	408_N	1.801	1.00
404_E	408_N	1.794	1.00
357_E	361_K	1.766	1.00
16_H	24_D	1.743	1.00
407_Q	411_Q	1.742	1.00
17_E	25_V	1.726	1.00
85_D	114_R	1.715	1.00
213_A	216_S	1.705	1.00
278_K	405_D	1.694	1.00
176_T	179_S	1.682	1.00
129_T	132_T	1.673	1.00
50_R	62_V	1.672	1.00
356_I	403_L	1.672	1.00
102_T	196_Y	1.660	1.00
28_L	377_I	1.643	1.00
133_V	185_K	1.641	1.00
67_A	191_C	1.641	1.00
124_Q	224_K	1.633	1.00
396_T	399_E	1.625	1.00
335_Q	338_E	1.619	1.00
113_E	220_E	1.610	1.00
334_D	338_E	1.605	1.00
145_N	177_V	1.594	1.00
27_V	211_P	1.581	1.00
189_Y	193_E	1.565	1.00
404_E	407_Q	1.551	1.00
79_D	127_Y	1.542	1.00
106_F	115_N	1.538	1.00
282_S	405_D	1.486	1.00
89_Q	114_R	1.481	1.00
187_L	190_E	1.471	1.00
62_V	187_L	1.469	1.00
415_A	418_R	1.464	1.00
50_R	63_P	1.459	1.00
24_D	202_L	1.439	1.00
70_L	128_F	1.434	1.00
342_S	346_R	1.427	1.00
31_K	208_P	1.417	1.00
285_L	401_I	1.405	1.00
66_I	183_I	1.397	1.00
347_A	351_I	1.386	1.00
117_E	221_N	1.370	1.00
23_L	201_M	1.369	1.00
23_L	203_L	1.368	1.00
217_Q	221_N	1.357	1.00
69_F	133_V	1.354	1.00
26_Y	202_L	1.354	1.00
41_T	382_T	1.349	1.00
324_A	330_T	1.341	1.00
16_H	385_A	1.337	1.00
29_P	210_D	1.327	1.00
17_E	27_V	1.326	1.00
307_I	310_T	1.318	1.00
50_R	61_H	1.314	1.00
190_E	193_E	1.310	1.00
46_S	173_I	1.305	1.00
114_R	117_E	1.300	1.00
109_T	208_P	1.298	1.00
278_K	397_V	1.292	1.00
100_T	169_V	1.286	1.00
217_Q	220_E	1.283	1.00
211_P	215_I	1.276	1.00
282_S	401_I	1.276	1.00
130_E	185_K	1.272	1.00
213_A	217_Q	1.266	1.00
43_K	200_N	1.262	1.00
302_Y	308_D	1.260	1.00
78_A	121_D	1.259	1.00
209_V	214_I	1.258	1.00
396_T	400_Q	1.257	1.00
300_S	339_D	1.251	1.00
120_I	222_Q	1.246	1.00
38_A	205_I	1.240	1.00
113_E	221_N	1.239	1.00
296_A	343_M	1.237	1.00
283_M	409_V	1.232	1.00
29_P	211_P	1.227	1.00
248_E	251_I	1.227	1.00
203_L	218_V	1.226	1.00
216_S	219_R	1.225	1.00
81_D	84_Q	1.214	1.00
327_G	330_T	1.209	1.00
142_Q	145_N	1.208	1.00
258_P	333_P	1.207	1.00
86_F	91_A	1.199	1.00
186_D	189_Y	1.195	1.00
113_E	213_A	1.189	1.00
326_I	329_D	1.175	1.00
264_L	341_S	1.175	1.00
24_D	385_A	1.175	1.00
133_V	188_L	1.175	1.00
47_I	319_Y	1.174	1.00
301_L	307_I	1.174	1.00
27_V	214_I	1.164	1.00
61_H	171_I	1.162	1.00
397_V	400_Q	1.160	1.00
219_R	223_G	1.159	1.00
247_K	251_I	1.157	1.00
81_D	85_D	1.149	1.00
68_H	72_H	1.142	1.00
16_H	26_Y	1.138	1.00
126_P	192_Y	1.137	1.00
360_R	398_L	1.136	1.00
116_L	217_Q	1.133	1.00
111_N	114_R	1.127	1.00
341_S	345_L	1.121	1.00
199_S	230_Q	1.117	1.00
120_I	124_Q	1.113	1.00
286_L	409_V	1.104	1.00
325_A	328_G	1.098	1.00
198_P	225_K	1.094	1.00
408_N	411_Q	1.091	1.00
89_Q	111_N	1.089	1.00
276_L	279_H	1.086	1.00
37_Y	107_S	1.083	1.00
299_E	303_E	1.082	1.00
85_D	88_K	1.079	1.00
202_L	385_A	1.075	1.00
144_I	174_A	1.075	1.00
36_T	207_G	1.071	1.00
76_E	136_E	1.070	1.00
86_F	93_A	1.069	1.00
116_L	218_V	1.068	1.00
206_V	378_A	1.066	1.00
262_V	341_S	1.063	1.00
44_Y	191_C	1.059	1.00
69_F	137_K	1.055	1.00
137_K	141_G	1.053	1.00
63_P	194_T	1.050	1.00
239_K	242_E	1.043	1.00
73_K	188_L	1.041	1.00
40_F	201_M	1.040	1.00
26_Y	385_A	1.038	1.00
288_E	359_A	1.030	1.00
293_K	298_Y	1.028	1.00
395_V	399_E	1.027	1.00
301_L	339_D	1.026	1.00
148_D	177_V	1.026	1.00
281_L	397_V	1.024	1.00
193_E	228_T	1.012	1.00
356_I	360_R	1.008	1.00
289_A	359_A	1.008	1.00
266_S	314_D	1.003	1.00
62_V	179_S	1.001	1.00
144_I	180_I	1.001	1.00
365_G	369_K	1.000	1.00
99_F	160_I	0.995	1.00
212_E	215_I	0.994	1.00
42_T	123_V	0.993	1.00
285_L	356_I	0.988	1.00
279_H	413_E	0.978	1.00
197_H	200_N	0.972	1.00
40_F	123_V	0.971	1.00
82_V	86_F	0.969	1.00
199_S	227_Y	0.969	1.00
205_I	209_V	0.966	1.00
354_E	358_L	0.957	1.00
36_T	109_T	0.954	1.00
249_K	252_K	0.951	1.00
68_H	71_E	0.951	1.00
17_E	211_P	0.950	1.00
394_V	398_L	0.949	1.00
34_N	208_P	0.948	1.00
339_D	343_M	0.945	1.00
70_L	188_L	0.945	1.00
132_T	135_K	0.943	1.00
73_K	133_V	0.942	1.00
165_K	170_R	0.941	1.00
410_I	414_I	0.936	1.00
28_L	206_V	0.935	1.00
278_K	282_S	0.933	1.00
137_K	180_I	0.931	1.00
348_G	411_Q	0.927	1.00
17_E	219_R	0.924	1.00
136_E	139_I	0.915	1.00
71_E	97_T	0.914	1.00
281_L	401_I	0.913	1.00
364_I	395_V	0.913	1.00
25_V	215_I	0.909	1.00
159_V	261_L	0.904	1.00
255_V	258_P	0.901	1.00
68_H	143_E	0.898	1.00
324_A	328_G	0.898	1.00
246_R	251_I	0.897	1.00
373_S	376_Y	0.894	1.00
85_D	89_Q	0.891	1.00
199_S	228_T	0.891	1.00
39_V	103_A	0.890	1.00
30_K	374_P	0.887	1.00
74_L	126_P	0.886	1.00
113_E	117_E	0.885	1.00
325_A	330_T	0.885	1.00
104_Y	196_Y	0.885	1.00
65_G	175_G	0.883	1.00
342_S	345_L	0.882	1.00
19_M	25_V	0.882	1.00
325_A	329_D	0.881	1.00
326_I	330_T	0.881	1.00
64_D	179_S	0.880	1.00
120_I	221_N	0.877	1.00
141_G	180_I	0.873	1.00
322_G	326_I	0.873	1.00
141_G	145_N	0.873	1.00
82_V	122_F	0.869	1.00
360_R	364_I	0.867	1.00
214_I	218_V	0.861	1.00
80_G	84_Q	0.859	1.00
291_F	312_S	0.856	1.00
268_N	276_L	0.856	1.00
140_I	180_I	0.856	1.00
41_T	103_A	0.855	1.00
283_M	413_E	0.855	1.00
278_K	400_Q	0.854	1.00
212_E	216_S	0.852	1.00
257_G	260_C	0.852	1.00
351_I	356_I	0.852	1.00
150_N	153_W	0.851	1.00
218_V	221_N	0.850	1.00
179_S	182_H	0.850	1.00
24_D	43_K	0.850	1.00
158_G	162_N	0.850	1.00
91_A	108_S	0.849	1.00
23_L	198_P	0.847	1.00
119_L	122_F	0.845	1.00
343_M	347_A	0.843	1.00
337_A	341_S	0.843	1.00
38_A	106_F	0.841	1.00
286_L	406_V	0.840	1.00
66_I	70_L	0.838	1.00
299_E	304_K	0.837	1.00
134_E	138_G	0.835	1.00
82_V	118_T	0.834	1.00
109_T	213_A	0.834	1.00
85_D	118_T	0.831	1.00
96_F	101_R	0.829	1.00
201_M	225_K	0.829	1.00
306_Y	332_E	0.828	1.00
112_V	214_I	0.827	1.00
112_V	217_Q	0.820	1.00
262_V	421_V	0.818	1.00
74_L	104_Y	0.815	1.00
40_F	222_Q	0.811	1.00
258_P	265_K	0.806	1.00
248_E	337_A	0.805	1.00
324_A	329_D	0.805	1.00
262_V	337_A	0.804	1.00
360_R	399_E	0.801	1.00
138_G	141_G	0.798	1.00
185_K	188_L	0.794	1.00
72_H	136_E	0.793	1.00
136_E	140_I	0.790	1.00
335_Q	339_D	0.790	1.00
106_F	119_L	0.789	1.00
240_E	243_A	0.788	1.00
68_H	97_T	0.788	1.00
267_K	413_E	0.784	1.00
166_E	170_R	0.782	1.00
48_D	233_I	0.775	1.00
178_E	182_H	0.770	1.00
364_I	368_L	0.767	1.00
324_A	327_G	0.765	1.00
301_L	310_T	0.763	1.00
191_C	195_F	0.763	1.00
397_V	401_I	0.758	1.00
44_Y	48_D	0.757	1.00
21_N	223_G	0.757	1.00
197_H	228_T	0.756	1.00
283_M	286_L	0.756	1.00
44_Y	195_F	0.751	1.00
351_I	407_Q	0.749	1.00
354_E	357_E	0.749	1.00
84_Q	88_K	0.749	1.00
72_H	97_T	0.743	1.00
63_P	183_I	0.742	1.00
63_P	66_I	0.741	1.00
247_K	250_E	0.739	1.00
310_T	340_I	0.738	1.00
116_L	221_N	0.738	1.00
321_F	324_A	0.737	1.00
284_N	394_V	0.737	1.00
147_Y	153_W	0.736	1.00
285_L	359_A	0.736	1.00
140_I	143_E	0.736	1.00
68_H	140_I	0.735	1.00
156_Y	160_I	0.734	1.00
334_D	337_A	0.734	1.00
131_K	135_K	0.733	1.00
72_H	143_E	0.733	1.00
351_I	403_L	0.732	1.00
69_F	188_L	0.732	1.00
298_Y	302_Y	0.728	1.00
157_F	161_E	0.728	1.00
289_A	355_K	0.725	1.00
74_L	122_F	0.721	1.00
352_T	403_L	0.720	1.00
155_L	261_L	0.720	1.00
318_E	321_F	0.719	1.00
260_C	263_G	0.719	1.00
256_Q	259_K	0.714	1.00
328_G	336_L	0.713	1.00
359_A	363_K	0.713	1.00
128_F	133_V	0.712	1.00
288_E	362_K	0.712	1.00
124_Q	225_K	0.711	1.00
76_E	132_T	0.709	1.00
99_F	173_I	0.708	1.00
40_F	119_L	0.706	1.00
69_F	140_I	0.705	1.00
268_N	277_L	0.702	1.00
163_M	322_G	0.702	1.00
321_F	326_I	0.701	1.00
247_K	252_K	0.701	1.00
82_V	85_D	0.698	1.00
167_H	170_R	0.695	1.00
91_A	115_N	0.694	1.00
204_F	378_A	0.689	1.00
120_I	224_K	0.688	1.00
258_P	264_L	0.687	1.00
83_F	86_F	0.687	1.00
64_D	171_I	0.685	1.00
70_L	191_C	0.684	1.00
286_L	347_A	0.683	1.00
221_N	224_K	0.681	1.00
341_S	419_L	0.680	1.00
46_S	99_F	0.680	1.00
186_D	193_E	0.677	1.00
67_A	70_L	0.677	1.00
258_P	263_G	0.676	1.00
73_K	76_E	0.675	1.00
297_Q	310_T	0.675	1.00
288_E	363_K	0.674	1.00
36_T	205_I	0.673	1.00
375_E	379_N	0.672	1.00
350_L	403_L	0.672	1.00
282_S	286_L	0.671	1.00
319_Y	323_F	0.671	1.00
72_H	140_I	0.670	1.00
72_H	75_F	0.670	1.00
374_P	377_I	0.669	1.00
204_F	381_F	0.668	1.00
368_L	395_V	0.667	1.00
195_F	200_N	0.666	1.00
83_F	93_A	0.664	1.00
246_R	249_K	0.664	1.00
30_K	377_I	0.664	1.00
380_Q	384_Y	0.664	1.00
71_E	102_T	0.663	1.00
326_I	340_I	0.662	1.00
49_N	65_G	0.661	1.00
78_A	126_P	0.660	1.00
322_G	330_T	0.660	1.00
204_F	382_T	0.660	1.00
356_I	401_I	0.658	1.00
246_R	250_E	0.657	1.00
191_C	196_Y	0.656	1.00
251_I	254_N	0.655	1.00
43_K	202_L	0.654	1.00
133_V	183_I	0.654	1.00
162_N	422_C	0.654	1.00
178_E	181_S	0.653	1.00
72_H	94_N	0.652	1.00
350_L	410_I	0.652	1.00
321_F	325_A	0.650	1.00
199_S	229_D	0.650	1.00
154_R	158_G	0.650	1.00
69_F	73_K	0.647	1.00
324_A	340_I	0.647	1.00
71_E	75_F	0.644	1.00
289_A	296_A	0.642	1.00
333_P	337_A	0.641	1.00
128_F	192_Y	0.641	1.00
362_K	365_G	0.640	1.00
393_D	396_T	0.640	1.00
78_A	125_D	0.639	1.00
128_F	185_K	0.638	1.00
97_T	102_T	0.638	1.00
71_E	143_E	0.637	1.00
195_F	198_P	0.637	1.00
382_T	386_F	0.637	1.00
46_S	49_N	0.634	1.00
37_Y	374_P	0.633	1.00
36_T	112_V	0.632	1.00
306_Y	335_Q	0.632	1.00
78_A	127_Y	0.631	1.00
248_E	252_K	0.631	1.00
50_R	194_T	0.630	1.00
298_Y	303_E	0.628	1.00
292_G	298_Y	0.628	1.00
286_L	414_I	0.627	1.00
319_Y	322_G	0.627	1.00
27_V	218_V	0.624	1.00
23_L	225_K	0.622	1.00
43_K	318_E	0.621	1.00
179_S	183_I	0.620	1.00
205_I	218_V	0.618	1.00
329_D	332_E	0.618	1.00
346_R	350_L	0.617	1.00
321_F	329_D	0.615	1.00
295_S	298_Y	0.614	1.00
41_T	204_F	0.614	1.00
337_A	421_V	0.612	1.00
71_E	95_A	0.612	1.00
407_Q	410_I	0.612	1.00
239_K	243_A	0.611	1.00
25_V	218_V	0.611	1.00
39_V	378_A	0.611	1.00
258_P	261_L	0.609	1.00
302_Y	307_I	0.608	1.00
362_K	366_T	0.607	1.00
340_I	343_M	0.606	1.00
39_V	105_L	0.606	1.00
95_A	104_Y	0.604	1.00
409_V	413_E	0.604	1.00
257_G	263_G	0.603	1.00
347_A	410_I	0.602	1.00
243_A	246_R	0.601	1.00
377_I	381_F	0.601	1.00
95_A	143_E	0.598	1.00
238_V	241_Q	0.598	1.00
44_Y	102_T	0.597	1.00
300_S	346_R	0.597	1.00
290_L	344_L	0.596	1.00
246_R	252_K	0.596	1.00
255_V	259_K	0.595	1.00
367_F	394_V	0.595	1.00
66_I	187_L	0.594	1.00
220_E	223_G	0.594	1.00
37_Y	378_A	0.594	1.00
136_E	175_G	0.589	1.00
285_L	363_K	0.588	1.00
36_T	209_V	0.588	1.00
257_G	265_K	0.588	1.00
285_L	406_V	0.587	1.00
350_L	404_E	0.587	1.00
26_Y	204_F	0.587	1.00
287_L	291_F	0.586	1.00
38_A	115_N	0.586	1.00
152_D	259_K	0.585	1.00
244_V	247_K	0.584	1.00
196_Y	200_N	0.583	1.00
31_K	34_N	0.583	1.00
30_K	206_V	0.582	1.00
192_Y	196_Y	0.581	1.00
26_Y	381_F	0.580	1.00
285_L	360_R	0.577	0.99
301_L	306_Y	0.574	0.99
301_L	340_I	0.573	0.99
147_Y	174_A	0.573	0.99
254_N	257_G	0.573	0.99
349_E	407_Q	0.569	0.99
19_M	219_R	0.568	0.99
146_M	150_N	0.568	0.99
210_D	214_I	0.568	0.99
296_A	352_T	0.566	0.99
21_N	198_P	0.565	0.99
72_H	95_A	0.564	0.99
245_F	248_E	0.562	0.99
296_A	300_S	0.561	0.99
137_K	181_S	0.561	0.99
345_L	416_A	0.561	0.99
23_L	222_Q	0.561	0.99
279_H	282_S	0.561	0.99
188_L	192_Y	0.558	0.99
68_H	139_I	0.556	0.99
123_V	192_Y	0.555	0.99
258_P	266_S	0.554	0.99
406_V	410_I	0.553	0.99
125_D	224_K	0.552	0.99
376_Y	380_Q	0.552	0.99
76_E	135_K	0.550	0.99
211_P	214_I	0.550	0.99
305_G	308_D	0.549	0.99
142_Q	146_M	0.548	0.99
322_G	325_A	0.548	0.99
307_I	328_G	0.546	0.99
381_F	385_A	0.545	0.99
30_K	33_F	0.543	0.99
157_F	172_D	0.543	0.99
63_P	67_A	0.542	0.99
260_C	333_P	0.542	0.99
203_L	222_Q	0.541	0.99
300_S	342_S	0.539	0.99
202_L	386_F	0.539	0.99
198_P	226_P	0.538	0.99
277_L	412_E	0.537	0.99
277_L	280_E	0.537	0.99
415_A	419_L	0.536	0.99
298_Y	307_I	0.535	0.99
116_L	214_I	0.535	0.99
148_D	157_F	0.534	0.99
235_R	238_V	0.533	0.99
96_F	105_L	0.532	0.99
266_S	269_P	0.531	0.99
31_K	210_D	0.530	0.99
17_E	218_V	0.529	0.99
133_V	137_K	0.528	0.99
153_W	157_F	0.528	0.99
49_N	64_D	0.527	0.99
416_A	419_L	0.527	0.99
384_Y	389_M	0.525	0.99
280_E	316_T	0.524	0.99
118_T	121_D	0.524	0.99
389_M	393_D	0.523	0.99
403_L	406_V	0.523	0.99
128_F	189_Y	0.523	0.99
238_V	242_E	0.522	0.99
95_A	122_F	0.522	0.99
71_E	140_I	0.521	0.99
71_E	196_Y	0.521	0.99
291_F	295_S	0.521	0.99
355_K	358_L	0.520	0.99
104_Y	119_L	0.519	0.99
280_E	284_N	0.517	0.99
27_V	215_I	0.517	0.99
98_S	101_R	0.516	0.99
376_Y	379_N	0.515	0.99
279_H	409_V	0.513	0.99
81_D	86_F	0.513	0.99
28_L	381_F	0.512	0.99
72_H	139_I	0.512	0.99
49_N	67_A	0.509	0.99
172_D	176_T	0.509	0.99
97_T	143_E	0.509	0.99
401_I	405_D	0.508	0.99
347_A	350_L	0.508	0.99
20_S	223_G	0.508	0.99
76_E	139_I	0.508	0.99
411_Q	415_A	0.507	0.99
145_N	148_D	0.506	0.99
155_L	159_V	0.506	0.99
38_A	112_V	0.505	0.99
333_P	423_K	0.504	0.99
42_T	102_T	0.504	0.99
83_F	87_S	0.503	0.99
313_F	324_A	0.502	0.99
114_R	118_T	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4xeaA	2	0.979	100	0.194	Contact Map
3eoqA	2	0.9182	100	0.217	Contact Map
1hr6B	1	0.9463	100	0.219	Contact Map
3amiA	2	0.9463	100	0.226	Contact Map
1pp9A	1	0.9579	100	0.229	Contact Map
4nnzA	2	0.8995	100	0.234	Contact Map
1q2lA	1	0.9626	100	0.235	Contact Map
3hdiA	2	0.9159	100	0.236	Contact Map
3amjB	1	0.9229	100	0.255	Contact Map
3cx5A	1	0.9159	100	0.256	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0117 seconds.