YMFF - BACSU - GREMLIN Contacts

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YMFF - Probable inactive metalloprotease YmfF

UniProt:	O31764	Sequences: MSYVNELKSKHGGLTAHIVKTEKFKTVSLIFKMLAPLTKDQVTKRALLPHVLLRGTKSHPKTAGLRSYLDELYGTSVSADLTKKGERHVITFRLEIPNEKYLKDQTPLLEKGLQLLAELVFSPALEGDAFQSQYVAQEKRTLKQRIQAVYDDKMRYSNLRLIQEMCKNDPYALHVNGEIDDVDDITAEQLYETYQSAIQKDQLDLYVVGDVDSNQVQSAIDKYFKTEERTLGMIENNHADEKVQPKEVIDEEDVKQGKLNIGYRTSITYTDQDYPALQVFNGLFGGFSHSKLFINVREKASLAYYAASRIESFKGLLMVMSGIEVKNFEQAVSIIAEQFQAMKNGDFSEQDIAQTKAVIRNQVLETIDTAYGLSEFLYQQAAAQVEIPIEDFLANIENVTKEDIIKAGEKIQLDTTYFLKGTEGAS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	426 (391)
Sequences:	15700 (12164)
Seq/√Len:	615.2

ECOLI - PTRA YHJJ PQQL
BACSU - YMFF YMXG YMFH ALBF

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
349_E	353_A	4.442	1.00
187_A	191_Y	4.078	1.00
338_Q	341_A	3.952	1.00
291_K	351_D	3.610	1.00
341_A	345_G	3.449	1.00
132_S	136_A	3.349	1.00
400_T	403_D	3.160	1.00
212_D	215_Q	3.122	1.00
403_D	406_K	3.103	1.00
360_R	397_E	3.037	1.00
327_N	330_Q	2.959	1.00
18_I	211_V	2.951	1.00
340_Q	344_N	2.863	1.00
295_N	299_K	2.782	1.00
161_L	262_G	2.772	1.00
110_E	219_A	2.757	1.00
281_N	308_S	2.757	1.00
188_E	192_E	2.724	1.00
349_E	401_K	2.711	1.00
57_K	122_S	2.619	1.00
273_D	410_K	2.619	1.00
143_K	183_D	2.487	1.00
61_K	64_G	2.347	1.00
41_Q	189_Q	2.292	1.00
11_H	221_D	2.283	1.00
136_A	139_K	2.261	1.00
348_S	351_D	2.233	1.00
295_N	300_A	2.226	1.00
207_V	216_V	2.165	1.00
343_K	409_E	2.162	1.00
118_E	122_S	2.159	1.00
217_Q	221_D	2.140	1.00
401_K	405_I	2.118	1.00
283_L	347_F	2.113	1.00
192_E	196_S	2.076	1.00
280_F	408_G	2.073	1.00
33_M	203_L	1.999	1.00
295_N	338_Q	1.988	1.00
31_F	205_L	1.986	1.00
9_S	15_T	1.941	1.00
333_S	337_E	1.932	1.00
346_D	405_I	1.882	1.00
58_S	114_Q	1.882	1.00
406_K	410_K	1.875	1.00
334_I	337_E	1.874	1.00
300_A	334_I	1.863	1.00
186_T	189_Q	1.847	1.00
178_E	181_D	1.834	1.00
96_I	112_G	1.827	1.00
160_R	163_Q	1.805	1.00
402_E	406_K	1.793	1.00
273_D	406_K	1.792	1.00
276_A	407_A	1.778	1.00
340_Q	343_K	1.748	1.00
300_A	330_Q	1.737	1.00
58_S	118_E	1.720	1.00
143_K	179_I	1.719	1.00
329_E	333_S	1.719	1.00
45_R	193_T	1.708	1.00
391_D	394_A	1.701	1.00
179_I	183_D	1.696	1.00
394_A	397_E	1.688	1.00
68_Y	111_K	1.663	1.00
352_I	401_K	1.654	1.00
319_V	335_I	1.651	1.00
110_E	222_K	1.635	1.00
215_Q	218_S	1.630	1.00
218_S	221_D	1.621	1.00
297_R	304_Y	1.618	1.00
90_I	198_I	1.613	1.00
8_K	217_Q	1.607	1.00
405_I	409_E	1.603	1.00
402_E	405_I	1.600	1.00
19_V	373_L	1.599	1.00
330_Q	333_S	1.584	1.00
353_A	357_A	1.582	1.00
69_L	75_T	1.580	1.00
261_I	336_A	1.552	1.00
15_T	204_D	1.542	1.00
131_Q	134_Y	1.540	1.00
8_K	16_A	1.527	1.00
353_A	356_K	1.522	1.00
279_V	399_V	1.521	1.00
147_Q	179_I	1.519	1.00
121_F	226_T	1.502	1.00
18_I	213_S	1.489	1.00
72_L	111_K	1.485	1.00
189_Q	192_E	1.482	1.00
56_T	118_E	1.481	1.00
94_L	112_G	1.472	1.00
218_S	222_K	1.472	1.00
191_Y	195_Q	1.466	1.00
47_L	135_V	1.436	1.00
388_P	391_D	1.435	1.00
46_A	50_H	1.434	1.00
17_H	204_D	1.423	1.00
14_L	205_L	1.412	1.00
291_K	338_Q	1.404	1.00
123_P	130_F	1.391	1.00
22_E	210_D	1.385	1.00
192_E	195_Q	1.377	1.00
135_V	187_A	1.371	1.00
57_K	129_A	1.357	1.00
20_K	212_D	1.347	1.00
276_A	399_V	1.341	1.00
337_E	341_A	1.340	1.00
342_M	347_F	1.334	1.00
34_L	202_Q	1.334	1.00
135_V	190_L	1.326	1.00
117_A	224_F	1.324	1.00
276_A	403_D	1.320	1.00
391_D	395_N	1.318	1.00
205_L	220_I	1.316	1.00
394_A	398_N	1.313	1.00
111_K	114_Q	1.306	1.00
80_D	91_T	1.303	1.00
272_Q	403_D	1.302	1.00
110_E	215_Q	1.299	1.00
309_R	318_M	1.287	1.00
110_E	223_Y	1.278	1.00
14_L	203_L	1.276	1.00
272_Q	395_N	1.265	1.00
219_A	223_Y	1.263	1.00
215_Q	219_A	1.251	1.00
263_Y	336_A	1.248	1.00
58_S	122_S	1.245	1.00
246_K	250_D	1.240	1.00
31_F	203_L	1.238	1.00
219_A	222_K	1.234	1.00
208_V	374_S	1.230	1.00
188_E	191_Y	1.228	1.00
277_L	407_A	1.219	1.00
20_K	213_S	1.216	1.00
113_L	219_A	1.215	1.00
321_S	331_A	1.207	1.00
44_K	185_I	1.201	1.00
32_K	378_Y	1.193	1.00
29_L	207_V	1.187	1.00
72_L	108_L	1.182	1.00
273_D	411_I	1.182	1.00
132_S	187_A	1.178	1.00
200_K	227_E	1.169	1.00
303_A	306_A	1.169	1.00
37_L	175_V	1.167	1.00
296_V	303_A	1.160	1.00
123_P	194_Y	1.159	1.00
54_R	138_E	1.157	1.00
295_N	334_I	1.156	1.00
406_K	409_E	1.155	1.00
323_I	331_A	1.148	1.00
213_S	217_Q	1.145	1.00
8_K	18_I	1.144	1.00
48_L	130_F	1.143	1.00
139_K	143_K	1.136	1.00
257_G	328_F	1.135	1.00
139_K	182_V	1.134	1.00
211_V	216_V	1.133	1.00
280_F	407_A	1.123	1.00
356_K	396_I	1.121	1.00
35_A	193_T	1.118	1.00
46_A	49_P	1.112	1.00
69_L	77_V	1.112	1.00
275_P	395_N	1.110	1.00
68_Y	71_E	1.107	1.00
347_F	352_I	1.104	1.00
40_D	189_Q	1.102	1.00
114_Q	223_Y	1.101	1.00
144_Q	147_Q	1.094	1.00
33_M	120_V	1.093	1.00
108_L	111_K	1.092	1.00
65_L	119_L	1.090	1.00
146_I	176_N	1.086	1.00
18_I	216_V	1.085	1.00
281_N	317_L	1.085	1.00
117_A	121_F	1.079	1.00
268_T	271_D	1.074	1.00
51_V	190_L	1.074	1.00
395_N	398_N	1.071	1.00
98_N	210_D	1.071	1.00
288_S	293_F	1.065	1.00
307_A	320_M	1.057	1.00
369_T	372_G	1.053	1.00
247_E	332_V	1.052	1.00
15_T	381_A	1.052	1.00
64_G	68_Y	1.049	1.00
48_L	190_L	1.046	1.00
113_L	220_I	1.044	1.00
25_K	210_D	1.042	1.00
221_D	225_K	1.040	1.00
78_S	81_L	1.039	1.00
47_L	139_K	1.033	1.00
321_S	335_I	1.023	1.00
116_L	119_L	1.020	1.00
32_K	91_T	1.014	1.00
214_N	217_Q	1.012	1.00
265_T	310_I	1.010	1.00
275_P	399_V	1.008	1.00
360_R	393_L	1.007	1.00
41_Q	196_S	1.007	1.00
361_N	365_E	1.003	1.00
280_F	404_I	1.001	1.00
134_Y	137_Q	0.999	1.00
27_V	209_G	0.998	1.00
59_H	118_E	0.996	1.00
50_H	138_E	0.991	1.00
385_V	388_P	0.990	1.00
240_D	243_V	0.989	1.00
282_G	355_T	0.981	1.00
28_S	95_E	0.980	1.00
52_L	123_P	0.979	1.00
17_H	381_A	0.974	1.00
43_T	177_G	0.971	1.00
270_T	273_D	0.969	1.00
352_I	356_K	0.968	1.00
283_L	355_T	0.963	1.00
296_V	334_I	0.957	1.00
207_V	211_V	0.952	1.00
110_E	114_Q	0.952	1.00
50_H	145_R	0.951	1.00
303_A	321_S	0.947	1.00
279_V	352_I	0.945	1.00
294_I	299_K	0.940	1.00
146_I	182_V	0.939	1.00
68_Y	72_L	0.938	1.00
109_L	219_A	0.936	1.00
204_D	381_A	0.934	1.00
46_A	145_R	0.933	1.00
94_L	116_L	0.933	1.00
136_A	140_R	0.933	1.00
347_F	401_K	0.932	1.00
261_I	332_V	0.928	1.00
214_N	218_S	0.924	1.00
332_V	336_A	0.923	1.00
8_K	213_S	0.923	1.00
51_V	135_V	0.921	1.00
138_E	141_T	0.917	1.00
364_L	393_L	0.908	1.00
150_Y	179_I	0.908	1.00
336_A	340_Q	0.906	1.00
42_V	181_D	0.902	1.00
294_I	298_E	0.901	1.00
50_H	53_L	0.898	1.00
161_L	260_N	0.897	1.00
239_A	243_V	0.897	1.00
306_A	335_I	0.896	1.00
413_L	416_T	0.895	1.00
203_L	227_E	0.893	1.00
201_D	230_T	0.893	1.00
44_K	48_L	0.892	1.00
390_E	394_A	0.889	1.00
30_I	91_T	0.889	1.00
344_N	409_E	0.889	1.00
123_P	129_A	0.886	1.00
143_K	147_Q	0.885	1.00
92_F	198_I	0.878	1.00
56_T	123_P	0.874	1.00
27_V	98_N	0.874	1.00
143_K	182_V	0.871	1.00
242_K	245_P	0.869	1.00
277_L	411_I	0.868	1.00
393_L	397_E	0.867	1.00
117_A	223_Y	0.864	1.00
84_K	171_Y	0.861	1.00
408_G	412_Q	0.859	1.00
14_L	200_K	0.857	1.00
109_L	216_V	0.853	1.00
167_K	172_A	0.848	1.00
337_E	340_Q	0.846	1.00
199_Q	230_T	0.846	1.00
65_L	115_L	0.846	1.00
201_D	229_R	0.845	1.00
80_D	85_G	0.841	1.00
142_L	182_V	0.838	1.00
82_T	85_G	0.822	1.00
291_K	348_S	0.820	1.00
201_D	232_G	0.818	1.00
283_L	291_K	0.818	1.00
220_I	223_Y	0.816	1.00
152_D	155_R	0.814	1.00
259_L	321_S	0.811	1.00
334_I	338_Q	0.811	1.00
278_Q	392_F	0.810	1.00
239_A	242_K	0.809	1.00
356_K	397_E	0.806	1.00
19_V	208_V	0.803	1.00
338_Q	342_M	0.800	1.00
15_T	34_L	0.799	1.00
59_H	68_Y	0.796	1.00
64_G	67_S	0.792	1.00
52_L	119_L	0.791	1.00
293_F	298_E	0.791	1.00
140_R	143_K	0.789	1.00
133_Q	137_Q	0.787	1.00
130_F	135_V	0.787	1.00
199_Q	202_Q	0.785	1.00
280_F	342_M	0.785	1.00
49_P	53_L	0.784	1.00
350_Q	354_Q	0.782	1.00
180_D	184_D	0.781	1.00
16_A	217_Q	0.781	1.00
350_Q	353_A	0.780	1.00
356_K	360_R	0.779	1.00
63_A	67_S	0.778	1.00
113_L	223_Y	0.775	1.00
206_Y	377_L	0.773	1.00
165_M	316_L	0.769	1.00
306_A	319_V	0.769	1.00
296_V	306_A	0.769	1.00
46_A	142_L	0.768	1.00
392_F	396_I	0.767	1.00
149_V	155_R	0.762	1.00
50_H	142_L	0.761	1.00
258_K	322_G	0.761	1.00
193_T	197_A	0.758	1.00
285_G	308_S	0.755	1.00
54_R	134_Y	0.755	1.00
348_S	401_K	0.754	1.00
195_Q	230_T	0.753	1.00
165_M	262_G	0.753	1.00
47_L	142_L	0.752	1.00
346_D	401_K	0.752	1.00
187_A	190_L	0.752	1.00
31_F	120_V	0.752	1.00
292_L	306_A	0.749	1.00
262_G	318_M	0.748	1.00
302_L	327_N	0.746	1.00
250_D	253_D	0.744	1.00
10_K	16_A	0.743	1.00
29_L	94_L	0.740	1.00
18_I	220_I	0.740	1.00
47_L	190_L	0.739	1.00
330_Q	334_I	0.738	1.00
168_N	172_A	0.737	1.00
34_L	204_D	0.735	1.00
75_T	96_I	0.734	1.00
68_Y	115_L	0.734	1.00
81_L	85_G	0.733	1.00
271_D	411_I	0.731	1.00
72_L	75_T	0.731	1.00
27_V	207_V	0.731	1.00
142_L	145_R	0.728	1.00
78_S	82_T	0.725	1.00
216_V	220_I	0.724	1.00
341_A	346_D	0.721	1.00
43_T	46_A	0.717	1.00
121_F	227_E	0.714	1.00
279_V	359_I	0.712	1.00
52_L	92_F	0.712	1.00
347_F	405_I	0.710	1.00
41_Q	185_I	0.710	1.00
324_E	327_N	0.709	1.00
376_F	380_Q	0.707	1.00
329_E	332_V	0.707	1.00
181_D	184_D	0.707	1.00
283_L	351_D	0.705	1.00
30_I	374_S	0.704	1.00
386_E	391_D	0.702	1.00
21_T	370_A	0.700	1.00
343_K	346_D	0.700	1.00
49_P	81_L	0.699	1.00
50_H	141_T	0.699	1.00
181_D	185_I	0.692	1.00
138_E	142_L	0.691	1.00
49_P	145_R	0.691	1.00
280_F	284_F	0.690	1.00
83_K	162_I	0.689	1.00
258_K	320_M	0.687	1.00
272_Q	276_A	0.687	1.00
12_G	200_K	0.687	1.00
239_A	245_P	0.687	1.00
35_A	197_A	0.686	1.00
81_L	84_K	0.686	1.00
272_Q	398_N	0.684	1.00
355_T	359_I	0.682	1.00
41_Q	45_R	0.680	1.00
301_S	304_Y	0.679	1.00
281_N	285_G	0.678	1.00
360_R	364_L	0.677	1.00
21_T	208_V	0.675	1.00
390_E	393_L	0.672	1.00
48_L	52_L	0.670	1.00
160_R	164_E	0.669	1.00
407_A	411_I	0.669	1.00
166_C	314_K	0.668	1.00
188_E	195_Q	0.666	1.00
56_T	129_A	0.665	1.00
358_V	361_N	0.665	1.00
12_G	225_K	0.664	1.00
276_A	280_F	0.664	1.00
345_G	405_I	0.663	1.00
279_V	355_T	0.661	1.00
158_N	162_I	0.661	1.00
46_A	81_L	0.659	1.00
157_S	260_N	0.658	1.00
212_D	216_V	0.657	1.00
295_N	337_E	0.656	1.00
18_I	207_V	0.655	1.00
44_K	189_Q	0.653	1.00
240_D	245_P	0.652	1.00
42_V	173_L	0.652	1.00
50_H	81_L	0.650	1.00
141_T	145_R	0.649	1.00
135_V	185_I	0.647	1.00
206_Y	378_Y	0.647	1.00
51_V	54_R	0.646	1.00
41_Q	44_K	0.646	1.00
160_R	248_V	0.646	1.00
282_G	359_I	0.645	1.00
165_M	264_R	0.645	1.00
117_A	226_T	0.644	1.00
59_H	65_L	0.643	1.00
206_Y	374_S	0.642	1.00
65_L	69_L	0.639	1.00
14_L	227_E	0.637	1.00
45_R	48_L	0.636	1.00
164_E	248_V	0.636	1.00
282_G	358_V	0.636	1.00
67_S	71_E	0.635	1.00
266_S	411_I	0.634	1.00
8_K	221_D	0.631	1.00
193_T	198_I	0.631	1.00
115_L	118_E	0.630	1.00
75_T	112_G	0.629	1.00
174_H	178_E	0.626	1.00
296_V	335_I	0.626	1.00
79_A	82_T	0.626	1.00
190_L	194_Y	0.624	1.00
308_S	317_L	0.623	1.00
56_T	122_S	0.623	1.00
293_F	297_R	0.622	1.00
284_F	339_F	0.620	1.00
49_P	90_I	0.619	1.00
27_V	211_V	0.617	1.00
59_H	114_Q	0.617	1.00
49_P	141_T	0.615	1.00
378_Y	382_A	0.615	1.00
31_F	224_F	0.614	1.00
240_D	244_Q	0.614	1.00
46_A	53_L	0.612	1.00
346_D	408_G	0.609	1.00
17_H	206_Y	0.609	1.00
149_V	176_N	0.608	1.00
130_F	194_Y	0.606	1.00
49_P	142_L	0.605	1.00
48_L	193_T	0.604	1.00
46_A	138_E	0.603	1.00
206_Y	381_A	0.603	1.00
46_A	141_T	0.601	1.00
409_E	413_L	0.597	1.00
198_I	202_Q	0.596	1.00
169_D	172_A	0.596	1.00
59_H	115_L	0.596	1.00
322_G	325_V	0.594	1.00
335_I	338_Q	0.593	1.00
296_V	302_L	0.591	1.00
287_F	290_S	0.591	1.00
353_A	397_E	0.589	1.00
14_L	224_F	0.589	1.00
237_N	240_D	0.589	1.00
78_S	85_G	0.588	1.00
285_G	290_S	0.587	1.00
21_T	25_K	0.586	1.00
116_L	120_V	0.585	1.00
27_V	109_L	0.583	1.00
279_V	356_K	0.581	1.00
208_V	370_A	0.580	1.00
22_E	25_K	0.579	1.00
54_R	137_Q	0.578	1.00
328_F	332_V	0.578	1.00
97_P	108_L	0.577	1.00
197_A	200_K	0.576	1.00
295_N	341_A	0.576	1.00
280_F	412_Q	0.576	1.00
204_D	382_A	0.575	1.00
130_F	187_A	0.574	1.00
156_Y	160_R	0.573	1.00
256_Q	322_G	0.572	1.00
263_Y	339_F	0.571	1.00
180_D	183_D	0.570	1.00
28_S	370_A	0.570	1.00
302_L	330_Q	0.568	1.00
279_V	404_I	0.568	1.00
62_T	134_Y	0.567	1.00
408_G	411_I	0.567	1.00
18_I	212_D	0.567	1.00
98_N	107_P	0.566	1.00
302_L	331_A	0.565	1.00
112_G	116_L	0.565	1.00
216_V	219_A	0.564	1.00
58_S	129_A	0.563	1.00
207_V	220_I	0.563	1.00
241_E	245_P	0.562	1.00
297_R	303_A	0.562	1.00
138_E	177_G	0.562	1.00
8_K	220_I	0.561	1.00
261_I	335_I	0.561	1.00
247_E	250_D	0.561	1.00
75_T	79_A	0.560	1.00
157_S	161_L	0.560	1.00
254_V	257_G	0.560	1.00
67_S	70_D	0.559	1.00
138_E	145_R	0.558	1.00
259_L	328_F	0.557	1.00
159_L	163_Q	0.556	1.00
134_Y	141_T	0.554	1.00
147_Q	150_Y	0.554	1.00
277_L	280_F	0.554	1.00
207_V	213_S	0.554	1.00
32_K	206_Y	0.552	1.00
154_M	258_K	0.552	1.00
50_H	177_G	0.551	1.00
395_N	399_V	0.551	1.00
35_A	90_I	0.550	1.00
414_D	417_Y	0.550	1.00
259_L	332_V	0.548	0.99
191_Y	194_Y	0.548	0.99
384_Q	388_P	0.548	0.99
343_K	405_I	0.548	0.99
29_L	205_L	0.547	0.99
405_I	408_G	0.545	0.99
271_D	274_Y	0.545	0.99
97_P	107_P	0.544	0.99
47_L	182_V	0.542	0.99
265_T	268_T	0.541	0.99
358_V	362_Q	0.541	0.99
311_E	318_M	0.540	0.99
43_T	50_H	0.539	0.99
78_S	93_R	0.539	0.99
331_A	335_I	0.539	0.99
30_I	93_R	0.538	0.99
50_H	78_S	0.538	0.99
241_E	244_Q	0.537	0.99
49_P	198_I	0.537	0.99
352_I	399_V	0.537	0.99
148_A	152_D	0.537	0.99
282_G	362_Q	0.535	0.99
341_A	344_N	0.534	0.99
57_K	118_E	0.533	0.99
36_P	43_T	0.533	0.99
197_A	202_Q	0.533	0.99
10_K	221_D	0.532	0.99
166_C	316_L	0.532	0.99
120_V	194_Y	0.531	0.99
54_R	141_T	0.529	0.99
200_K	228_E	0.529	0.99
291_K	295_N	0.525	0.99
211_V	220_I	0.524	0.99
282_G	286_G	0.524	0.99
66_R	77_V	0.524	0.99
346_D	402_E	0.523	0.99
275_P	392_F	0.522	0.99
201_D	231_L	0.522	0.99
256_Q	304_Y	0.522	0.99
194_Y	198_I	0.521	0.99
29_L	116_L	0.521	0.99
114_Q	118_E	0.521	0.99
46_A	92_F	0.521	0.99
158_N	260_N	0.520	0.99
314_K	317_L	0.518	0.99
363_V	392_F	0.518	0.99
283_L	404_I	0.518	0.99
273_D	276_A	0.517	0.99
21_T	373_L	0.517	0.99
80_D	375_E	0.517	0.99
17_H	377_L	0.517	0.99
351_D	354_Q	0.515	0.99
271_D	410_K	0.514	0.99
259_L	323_I	0.513	0.99
98_N	108_L	0.513	0.99
72_L	115_L	0.513	0.99
50_H	92_F	0.512	0.99
31_F	116_L	0.511	0.99
339_F	343_K	0.509	0.99
223_Y	226_T	0.508	0.99
342_M	408_G	0.508	0.99
144_Q	148_A	0.507	0.99
404_I	408_G	0.506	0.99
274_Y	278_Q	0.505	0.99
146_I	178_E	0.505	0.99
298_E	303_A	0.505	0.99
49_P	138_E	0.505	0.99
287_F	293_F	0.504	0.99
251_E	254_V	0.503	0.99
260_N	318_M	0.502	0.99
280_F	317_L	0.502	0.99
339_F	412_Q	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3eoqA	2	0.9343	100	0.149	Contact Map
1hr6B	1	0.9531	100	0.162	Contact Map
3hdiA	2	0.9343	100	0.165	Contact Map
3amiA	2	0.9554	100	0.171	Contact Map
4nnzA	2	0.8991	100	0.176	Contact Map
1q2lA	1	0.9531	100	0.188	Contact Map
3gwbA	2	0.939	100	0.191	Contact Map
3amjB	1	0.9437	100	0.191	Contact Map
1pp9A	1	0.946	100	0.192	Contact Map
1hr6A	1	0.946	100	0.196	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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