GREMLIN Database
YLQB - Uncharacterized protein YlqB
UniProt: O31737 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 161 (129)
Sequences: 627 (556)
Seq/√Len: 49.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
67_G84_F4.7741.00
71_D75_Q3.9471.00
67_G109_V3.1431.00
102_D106_T3.0241.00
101_T107_F3.0201.00
141_G145_L2.4391.00
70_L74_G2.3541.00
38_N41_T2.2711.00
102_D107_F2.2291.00
107_F124_T2.1131.00
141_G147_S2.0791.00
77_V80_A2.0451.00
24_Q29_E2.0101.00
22_A26_D2.0091.00
67_G107_F1.9490.99
94_T97_A1.8960.99
82_V107_F1.8640.99
26_D30_A1.8050.99
107_F114_G1.7710.99
147_S150_N1.7450.99
141_G144_R1.7180.98
68_K106_T1.6960.98
66_S106_T1.6570.98
58_R61_Y1.6270.98
67_G124_T1.5780.97
82_V124_T1.5720.97
96_T101_T1.5520.97
84_F99_G1.5450.97
84_F109_V1.5350.97
26_D29_E1.5270.97
99_G107_F1.4100.95
20_F25_A1.3840.94
23_Q30_A1.3180.93
34_A38_N1.3170.93
56_Y145_L1.2920.92
78_P103_A1.2570.91
22_A29_E1.2480.90
70_L129_H1.2390.90
84_F122_Y1.2380.90
65_V84_F1.2040.89
126_V129_H1.2030.89
21_P24_Q1.1840.88
67_G114_G1.1750.88
62_N110_P1.1660.87
52_G128_V1.1420.86
138_V141_G1.1330.86
24_Q30_A1.1320.86
87_D121_T1.1310.85
23_Q26_D1.1150.85
81_P100_T1.1110.84
48_K52_G1.0960.84
146_V150_N1.0940.84
21_P32_Y1.0710.82
71_D77_V1.0700.82
83_R98_S1.0570.81
47_G50_N1.0460.81
143_S147_S1.0410.80
137_R140_S1.0380.80
29_E32_Y1.0310.80
59_V115_P1.0270.79
84_F114_G1.0260.79
103_A106_T1.0250.79
137_R144_R1.0180.79
69_L82_V1.0060.78
94_T109_V1.0000.78
67_G111_M0.9760.76
69_L102_D0.9660.75
22_A25_A0.9660.75
66_S108_E0.9550.74
46_Y80_A0.9440.73
143_S148_T0.9270.72
20_F24_Q0.9230.72
97_A108_E0.8980.70
93_T97_A0.8960.69
79_N112_Y0.8850.68
50_N85_E0.8840.68
141_G146_V0.8820.68
51_Y95_Q0.8820.68
111_M125_S0.8780.68
45_V48_K0.8750.68
77_V101_T0.8740.67
140_S145_L0.8590.66
108_E134_I0.8470.65
111_M127_S0.8470.65
69_L77_V0.8400.64
26_D49_I0.8390.64
62_N112_Y0.8370.64
46_Y49_I0.8270.63
139_F144_R0.8250.63
98_S101_T0.8220.63
48_K51_Y0.8190.62
55_Q63_I0.8160.62
45_V52_G0.8140.62
144_R147_S0.8080.61
40_S111_M0.8070.61
99_G110_P0.8040.61
21_P76_P0.8020.61
84_F94_T0.7980.60
114_G118_G0.7890.59
142_E147_S0.7890.59
84_F107_F0.7820.59
77_V128_V0.7810.59
120_Y124_T0.7790.59
84_F87_D0.7740.58
146_V149_D0.7740.58
67_G120_Y0.7710.58
109_V114_G0.7710.58
30_A41_T0.7690.58
121_T135_P0.7620.57
27_A30_A0.7620.57
58_R141_G0.7600.57
58_R138_V0.7580.56
70_L136_F0.7560.56
37_T125_S0.7540.56
24_Q59_V0.7540.56
72_Q117_A0.7460.55
45_V54_G0.7430.55
114_G136_F0.7360.54
111_M126_V0.7340.54
82_V102_D0.7290.54
59_V112_Y0.7270.53
30_A35_S0.7170.52
19_G22_A0.7000.51
136_F139_F0.6980.50
140_S144_R0.6960.50
47_G51_Y0.6900.50
32_Y38_N0.6890.49
79_N101_T0.6880.49
44_G83_R0.6830.49
91_G94_T0.6820.49
47_G52_G0.6820.49
65_V122_Y0.6810.49
48_K53_Q0.6790.48
56_Y80_A0.6790.48
30_A37_T0.6740.48
25_A28_A0.6740.48
40_S62_N0.6650.47
95_Q115_P0.6590.46
25_A29_E0.6530.46
32_Y35_S0.6400.45
139_F142_E0.6360.44
34_A37_T0.6230.43
111_M122_Y0.6190.42
138_V150_N0.6120.42
139_F146_V0.6100.42
57_W63_I0.6100.42
125_S134_I0.6090.41
72_Q102_D0.6070.41
25_A31_P0.6050.41
59_V77_V0.6000.41
142_E150_N0.5980.40
22_A36_I0.5970.40
20_F32_Y0.5970.40
95_Q100_T0.5970.40
53_Q63_I0.5950.40
38_N42_D0.5950.40
56_Y61_Y0.5940.40
65_V134_I0.5920.40
24_Q28_A0.5910.40
39_I123_Y0.5880.39
139_F148_T0.5870.39
58_R120_Y0.5870.39
85_E125_S0.5860.39
19_G24_Q0.5800.39
23_Q36_I0.5790.39
121_T124_T0.5780.38
33_K116_A0.5770.38
62_N79_N0.5740.38
46_Y52_G0.5690.38
35_S43_G0.5640.37
55_Q117_A0.5580.37
108_E116_A0.5500.36
125_S129_H0.5490.36
79_N104_N0.5490.36
82_V126_V0.5410.35
69_L78_P0.5390.35
92_N96_T0.5380.35
100_T108_E0.5340.34
84_F124_T0.5330.34
144_R150_N0.5310.34
34_A41_T0.5260.34
32_Y75_Q0.5240.33
73_N81_P0.5180.33
77_V104_N0.5140.32
77_V129_H0.5130.32
129_H133_I0.5080.32
112_Y125_S0.5080.32
70_L81_P0.5070.32
31_P35_S0.5060.32
78_P116_A0.5050.32
139_F147_S0.5030.32
33_K36_I0.5020.31
58_R115_P0.5010.31
23_Q27_A0.5000.31
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1cwvA 1 0.7081 99.2 0.506 Contact Map
4e9lA 1 0.8634 99.1 0.524 Contact Map
1f00I 1 0.6894 99 0.548 Contact Map
1wlhA 2 0.9441 96.9 0.727 Contact Map
4umgA 1 0.6335 96.7 0.736 Contact Map
2di7A 1 0.7329 95.9 0.754 Contact Map
2ds4A 1 0.6832 95.7 0.758 Contact Map
3e8vA 1 0.5031 95.6 0.76 Contact Map
3gm8A 1 0.8199 95.4 0.764 Contact Map
1qfhA 2 0.7516 95.3 0.766 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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