GREMLIN Database
YLMC - Uncharacterized protein YlmC
UniProt: O31725 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 81 (76)
Sequences: 467 (345)
Seq/√Len: 39.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
14_N17_N3.3621.00
30_N37_Q3.2761.00
65_V75_R3.2101.00
11_D20_K2.8371.00
12_V24_I2.5051.00
16_S75_R2.1630.99
29_I36_I2.0750.99
11_D42_G2.0470.99
39_I64_I1.9840.99
10_K28_D1.9420.99
18_G71_V1.8460.98
18_G66_K1.7120.97
51_F65_V1.6810.96
35_K47_V1.6620.96
24_I72_I1.4510.92
17_N25_G1.3900.90
44_N57_L1.3730.90
11_D23_S1.3680.90
2_I42_G1.3410.89
26_D70_D1.3140.88
60_P63_N1.3020.87
49_G52_G1.2950.87
9_V29_I1.2290.84
64_I67_I1.2250.84
18_G35_K1.2210.84
31_V36_I1.2210.84
43_G56_E1.2180.83
34_G66_K1.2050.83
35_K62_R1.1990.82
17_N24_I1.1910.82
10_K34_G1.1860.82
38_A58_V1.1460.79
3_S69_E1.1320.79
12_V42_G1.1320.79
15_V73_L1.0920.76
27_I71_V1.0790.75
2_I29_I1.0580.74
8_Q13_V0.9880.68
5_S56_E0.9860.68
41_L57_L0.9650.67
13_V45_G0.9500.65
29_I33_T0.9330.64
5_S66_K0.9280.63
13_V18_G0.9050.61
60_P66_K0.9050.61
25_G46_K0.8930.60
46_K49_G0.8700.58
51_F55_E0.8690.58
30_N77_S0.8640.58
46_K73_L0.8620.58
53_K61_W0.8580.57
38_A61_W0.8410.56
21_L67_I0.8240.54
25_G41_L0.8230.54
20_K27_I0.8210.54
40_I47_V0.8170.54
47_V51_F0.8150.53
37_Q62_R0.8130.53
39_I66_K0.8100.53
21_L75_R0.7940.52
57_L77_S0.7800.50
47_V54_E0.7760.50
4_I28_D0.7730.50
18_G55_E0.7670.49
43_G53_K0.7480.47
29_I50_F0.7280.46
41_L44_N0.7190.45
25_G66_K0.7150.44
4_I27_I0.7080.44
34_G41_L0.7070.44
41_L62_R0.7050.43
43_G49_G0.6950.43
6_E31_V0.6940.43
15_V65_V0.6810.41
21_L76_L0.6700.40
4_I31_V0.6650.40
13_V33_T0.6570.39
41_L59_I0.6540.39
19_K51_F0.6470.38
11_D63_N0.6460.38
20_K55_E0.6420.38
14_N33_T0.6400.38
16_S63_N0.6340.37
43_G54_E0.6320.37
2_I69_E0.6310.37
24_I39_I0.6120.35
10_K69_E0.6120.35
4_I39_I0.6030.35
54_E62_R0.6020.35
19_K71_V0.6010.34
26_D73_L0.5860.33
19_K72_I0.5820.33
61_W69_E0.5810.33
7_F76_L0.5800.33
18_G69_E0.5760.32
7_F63_N0.5560.31
8_Q71_V0.5530.31
44_N48_L0.5480.30
15_V18_G0.5480.30
40_I73_L0.5460.30
9_V73_L0.5300.29
8_Q23_S0.5260.29
48_L59_I0.5220.28
14_N76_L0.5220.28
30_N33_T0.5180.28
33_T51_F0.5170.28
6_E37_Q0.5160.28
27_I55_E0.5150.28
18_G31_V0.5140.28
56_E73_L0.5080.27
32_T62_R0.5040.27
9_V54_E0.5010.27
59_I69_E0.5010.27
42_G47_V0.5000.27
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1pm3A 2 0.8519 99.8 0.405 Contact Map
3htrA 2 0.9383 99.4 0.585 Contact Map
1eysH 1 0.8889 96.2 0.806 Contact Map
1rzhH 1 0.8765 95.6 0.816 Contact Map
2wjnH 1 0.8889 95 0.823 Contact Map
4da2A 1 0.9012 37.4 0.901 Contact Map
1a62A 1 0.9753 25 0.91 Contact Map
2dyiA 1 0.9012 23.3 0.911 Contact Map
2qggA 1 0.8889 13.7 0.92 Contact Map
2f1lA 2 0.8765 12.9 0.921 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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