GREMLIN Database
YKZG - UPF0356 protein YkzG
UniProt: O31718 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 69 (68)
Sequences: 297 (194)
Seq/√Len: 23.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
6_F54_F2.7690.99
52_G59_Q2.6360.99
7_Y23_L2.4560.98
52_G56_E2.3830.98
30_E46_F2.3580.98
30_E49_P2.1060.95
9_E21_D2.0970.95
31_R48_T1.8650.91
50_V54_F1.8050.90
1_M15_P1.5790.83
56_E59_Q1.5770.83
6_F20_T1.5560.82
33_V37_L1.5100.80
42_F48_T1.4680.78
5_V35_T1.4640.77
59_Q64_F1.4560.77
19_K44_I1.3950.74
13_E16_V1.3660.72
19_K68_E1.3230.70
6_F61_S1.2870.68
48_T54_F1.2700.67
30_E34_R1.2390.65
27_G32_D1.2220.63
3_Y49_P1.2160.63
13_E59_Q1.2130.63
24_Y50_V1.2010.62
36_K67_L1.1800.61
6_F48_T1.1340.58
10_K54_F1.1200.57
16_V40_K1.1190.57
37_L68_E1.1170.56
27_G66_V1.0910.55
16_V19_K1.0760.54
6_F51_D1.0440.51
32_D36_K1.0430.51
27_G48_T1.0160.49
29_S49_P1.0140.49
31_R44_I1.0110.49
3_Y12_D1.0050.49
60_Q65_K0.9540.45
49_P53_A0.9500.45
19_K67_L0.9480.45
10_K28_V0.9450.44
50_V67_L0.9220.43
16_V38_K0.9130.42
48_T51_D0.9090.42
22_S25_I0.8900.41
26_E66_V0.8890.41
62_E65_K0.8830.40
6_F19_K0.8680.39
34_R47_I0.8670.39
14_V48_T0.8530.38
30_E44_I0.8510.38
13_E31_R0.8400.37
13_E37_L0.8390.37
12_D41_K0.8270.36
10_K31_R0.7960.34
24_Y64_F0.7910.34
37_L67_L0.7880.34
29_S51_D0.7820.34
23_L44_I0.7700.33
25_I34_R0.7610.32
41_K53_A0.7510.32
6_F29_S0.7370.31
14_V57_Y0.7320.31
21_D49_P0.7240.30
11_A22_S0.7210.30
10_K51_D0.7210.30
33_V36_K0.7140.29
30_E66_V0.6980.29
35_T43_N0.6970.28
26_E30_E0.6900.28
24_Y44_I0.6720.27
39_E46_F0.6610.26
7_Y22_S0.6520.26
39_E47_I0.6420.25
38_K68_E0.6330.25
23_L48_T0.6280.25
2_I25_I0.6210.24
56_E60_Q0.6130.24
25_I33_V0.6050.23
5_V44_I0.5870.23
29_S32_D0.5860.23
24_Y61_S0.5850.23
24_Y54_F0.5840.22
33_V40_K0.5830.22
10_K19_K0.5820.22
53_A61_S0.5690.22
50_V55_L0.5670.22
2_I12_D0.5640.21
23_L42_F0.5500.21
14_V66_V0.5500.21
12_D43_N0.5280.20
9_E24_Y0.5250.20
27_G33_V0.5240.20
62_E66_V0.5230.20
6_F16_V0.5210.20
14_V67_L0.5180.19
3_Y21_D0.5070.19
21_D41_K0.5050.19
33_V43_N0.5030.19
56_E64_F0.5000.19
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4njcA 1 0.8406 99.9 0.215 Contact Map
3voqA 2 0.5942 16.6 0.911 Contact Map
3ulbA 2 0.6522 11.6 0.917 Contact Map
3kuzA 2 0.913 3.7 0.934 Contact Map
4dbbA 1 0.2754 3.1 0.937 Contact Map
3zey4 1 0.5217 3 0.937 Contact Map
4bwzA 2 0.2609 2.1 0.942 Contact Map
4mtsA 2 0.913 2.1 0.942 Contact Map
2dkaA 1 0.5652 2.1 0.943 Contact Map
4nicA 2 0.7246 1.9 0.944 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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