YKPA - BACSU - GREMLIN Contacts

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YKPA - Uncharacterized ABC transporter ATP-binding protein YkpA

UniProt:	O31716	Sequences: MIAVNNVSLRFADRKLFEDVNIKFTPGNCYGLIGANGAGKSTFLKVLSGEIEPQTGDVHMSPGERLAVLKQNHFEYEEYEVLKVVIMGHKRLYEVMQEKDAIYMKPDFSDEDGIRAAELEGEFAELNGWEAESEAAILLKGLGISEDLHTKKMADLGGSEKVKVLLAQALFGKPDVLLLDEPTNHLDLQAIQWLEEFLINFENTVIVVSHDRHFLNKVCTHIADLDFNKIQIYVGNYDFWYESSQLALKLSQEANKKKEEQIKQLQEFVARFSANASKSKQATSRKKLLEKITLDDIKPSSRRYPYVNFTPEREIGNDVLRVEGLTKTIDGVKVLDNVSFIMNREDKIAFTGRNELAVTTLFKIISGEMEADSGTFKWGVTTSQAYFPKDNSEYFEGSDLNLVDWLRQYSPHDQSESFLRGFLGRMLFSGEEVHKKANVLSGGEKVRCMLSKAMLSGANILILDEPTNHLDLESITALNNGLISFKGAMLFTSHDHQFVQTIANRIIEITPNGIVDKQMSYDEFLENADVQKKLTELYAE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	540 (409)
Sequences:	557 (425)
Seq/√Len:	21.0

ECOLI - UUP YHES ETTA GSIA XYLG ALSA MGLA MODF YBIT YEJF YBHF YPHE YTFR LSRA ARAG
BACSU - YKPA YFMM YDIF YFMR YKOD EXPZ YUFO RBSA
HALSA - Q9HMC1 Q9HR21
SULSO - Y1893 Y2030 Q97UG5 Q980K5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
216_N	238_D	5.942	1.00
322_V	325_L	5.207	1.00
324_G	339_S	4.241	1.00
324_G	337_N	4.224	1.00
342_M	348_I	3.969	1.00
4_V	7_V	3.868	1.00
44_L	208_V	3.702	1.00
31_G	222_I	3.540	1.00
327_K	364_I	3.458	1.00
2_I	176_V	3.149	1.00
100_D	103_Y	3.072	0.99
156_L	164_V	3.016	0.99
98_E	115_R	2.987	0.99
322_V	340_F	2.862	0.99
323_E	375_T	2.859	0.99
68_V	71_Q	2.740	0.99
9_L	54_Q	2.652	0.98
31_G	36_N	2.536	0.98
224_D	240_W	2.492	0.98
343_N	346_D	2.466	0.98
159_S	355_E	2.436	0.97
2_I	60_M	2.425	0.97
96_M	100_D	2.414	0.97
328_T	372_D	2.375	0.97
123_F	128_G	2.360	0.97
327_K	372_D	2.277	0.96
325_L	364_I	2.273	0.96
400_L	405_W	2.253	0.96
358_V	389_K	2.251	0.96
352_G	358_V	2.192	0.95
81_V	86_I	2.132	0.94
236_N	239_F	2.111	0.94
275_N	278_K	2.102	0.94
36_N	53_P	2.065	0.93
364_I	371_A	2.059	0.93
329_I	360_T	2.055	0.93
28_N	221_H	2.035	0.93
106_P	109_S	2.022	0.92
209_S	354_N	2.000	0.92
266_Q	270_A	1.984	0.92
127_N	130_E	1.980	0.91
6_N	19_D	1.976	0.91
96_M	103_Y	1.966	0.91
4_V	22_I	1.961	0.91
4_V	47_L	1.949	0.91
166_L	194_L	1.930	0.90
266_Q	269_V	1.927	0.90
86_I	96_M	1.916	0.90
158_G	389_K	1.896	0.90
396_E	405_W	1.893	0.89
327_K	334_V	1.879	0.89
151_K	155_D	1.851	0.88
101_A	168_Q	1.840	0.88
355_E	389_K	1.834	0.88
321_R	341_I	1.821	0.88
157_G	389_K	1.799	0.87
158_G	358_V	1.782	0.86
322_V	365_I	1.776	0.86
360_T	389_K	1.776	0.86
159_S	357_A	1.720	0.84
31_G	219_C	1.719	0.84
24_F	206_I	1.715	0.84
272_F	275_N	1.713	0.84
283_T	286_K	1.691	0.83
317_N	343_N	1.687	0.83
31_G	209_S	1.670	0.82
36_N	54_Q	1.627	0.81
7_V	46_V	1.617	0.80
34_G	39_G	1.617	0.80
156_L	272_F	1.599	0.80
144_I	156_L	1.597	0.80
101_A	405_W	1.592	0.79
255_N	259_E	1.592	0.79
157_G	360_T	1.584	0.79
20_V	230_I	1.584	0.79
252_Q	256_K	1.581	0.79
101_A	104_M	1.574	0.78
333_K	336_D	1.573	0.78
187_D	358_V	1.568	0.78
243_S	247_A	1.563	0.78
352_G	355_E	1.560	0.78
156_L	160_E	1.556	0.78
352_G	357_A	1.531	0.76
31_G	215_L	1.531	0.76
157_G	358_V	1.527	0.76
67_A	71_Q	1.525	0.76
46_V	58_V	1.522	0.76
6_N	161_K	1.520	0.76
34_G	40_K	1.508	0.75
328_T	364_I	1.502	0.75
8_S	19_D	1.494	0.75
323_E	339_S	1.488	0.74
99_K	103_Y	1.486	0.74
105_K	108_F	1.483	0.74
148_L	156_L	1.469	0.73
159_S	389_K	1.467	0.73
187_D	389_K	1.459	0.73
64_E	71_Q	1.458	0.73
181_E	210_H	1.457	0.73
163_K	190_A	1.455	0.73
142_L	190_A	1.446	0.72
268_F	272_F	1.446	0.72
354_N	358_V	1.441	0.72
142_L	167_A	1.422	0.71
34_G	37_G	1.416	0.71
325_L	371_A	1.412	0.70
85_V	88_G	1.411	0.70
31_G	211_D	1.397	0.70
272_F	278_K	1.395	0.69
269_V	289_L	1.389	0.69
116_A	123_F	1.383	0.69
11_F	16_L	1.368	0.68
364_I	372_D	1.360	0.67
110_D	114_I	1.357	0.67
148_L	151_K	1.347	0.67
212_R	236_N	1.345	0.66
326_T	337_N	1.344	0.66
7_V	32_L	1.333	0.66
58_V	228_N	1.331	0.66
157_G	354_N	1.318	0.65
357_A	389_K	1.303	0.64
37_G	40_K	1.299	0.64
86_I	100_D	1.289	0.63
47_L	172_G	1.275	0.62
225_L	230_I	1.273	0.62
335_L	364_I	1.271	0.62
2_I	402_L	1.263	0.61
156_L	162_V	1.262	0.61
273_S	286_K	1.251	0.61
338_V	348_I	1.245	0.60
156_L	279_S	1.243	0.60
330_D	350_F	1.243	0.60
36_N	211_D	1.243	0.60
195_E	212_R	1.234	0.60
22_I	223_A	1.227	0.59
1_M	208_V	1.223	0.59
108_F	113_G	1.223	0.59
102_I	359_T	1.222	0.59
284_S	291_K	1.218	0.59
354_N	360_T	1.214	0.58
320_L	342_M	1.209	0.58
116_A	162_V	1.201	0.58
42_T	174_P	1.198	0.57
355_E	358_V	1.195	0.57
109_S	113_G	1.186	0.57
266_Q	294_L	1.184	0.56
12_A	54_Q	1.183	0.56
91_R	96_M	1.165	0.55
6_N	21_N	1.165	0.55
195_E	211_D	1.160	0.55
144_I	148_L	1.159	0.55
354_N	363_K	1.158	0.55
106_P	110_D	1.157	0.55
108_F	112_D	1.153	0.54
262_I	289_L	1.148	0.54
371_A	376_F	1.146	0.54
198_L	205_V	1.139	0.53
146_E	149_H	1.137	0.53
4_V	359_T	1.134	0.53
325_L	365_I	1.132	0.53
30_Y	176_V	1.124	0.52
113_G	120_E	1.123	0.52
114_I	117_A	1.122	0.52
157_G	357_A	1.121	0.52
178_L	401_N	1.117	0.52
318_D	321_R	1.116	0.52
1_M	278_K	1.111	0.52
335_L	338_V	1.107	0.51
158_G	187_D	1.103	0.51
103_Y	106_P	1.092	0.50
326_T	373_S	1.084	0.50
82_L	86_I	1.083	0.50
158_G	355_E	1.080	0.50
338_V	359_T	1.079	0.49
340_F	361_L	1.079	0.49
36_N	185_H	1.077	0.49
168_Q	405_W	1.075	0.49
157_G	355_E	1.072	0.49
10_R	13_D	1.069	0.49
27_G	204_T	1.067	0.49
276_A	287_K	1.062	0.48
363_K	369_M	1.061	0.48
182_P	354_N	1.054	0.48
10_R	15_K	1.047	0.47
316_G	379_G	1.042	0.47
157_G	160_E	1.042	0.47
139_L	149_H	1.042	0.47
340_F	348_I	1.040	0.47
69_L	208_V	1.038	0.47
36_N	212_R	1.036	0.47
261_Q	264_Q	1.035	0.47
187_D	360_T	1.033	0.46
344_R	379_G	1.032	0.46
221_H	234_V	1.031	0.46
85_V	164_V	1.031	0.46
158_G	185_H	1.029	0.46
50_E	63_G	1.025	0.46
18_E	229_K	1.020	0.46
183_T	365_I	1.014	0.45
13_D	225_L	1.005	0.45
270_A	284_S	0.990	0.44
350_F	353_R	0.988	0.43
268_F	285_R	0.987	0.43
107_D	110_D	0.986	0.43
107_D	111_E	0.981	0.43
292_I	342_M	0.978	0.43
352_G	389_K	0.978	0.43
95_V	103_Y	0.978	0.43
90_K	94_E	0.977	0.43
150_T	377_K	0.975	0.43
282_A	287_K	0.973	0.42
400_L	404_D	0.968	0.42
90_K	98_E	0.967	0.42
66_L	69_L	0.950	0.41
214_F	354_N	0.950	0.41
28_N	232_I	0.950	0.41
13_D	18_E	0.949	0.41
96_M	102_I	0.945	0.41
400_L	408_Q	0.937	0.40
24_F	338_V	0.937	0.40
265_L	286_K	0.937	0.40
78_E	88_G	0.936	0.40
265_L	269_V	0.935	0.40
318_D	344_R	0.935	0.40
53_P	58_V	0.934	0.40
32_L	225_L	0.932	0.40
86_I	135_A	0.927	0.40
237_Y	240_W	0.921	0.39
121_G	168_Q	0.920	0.39
166_L	178_L	0.920	0.39
28_N	83_K	0.919	0.39
15_K	18_E	0.915	0.39
21_N	176_V	0.915	0.39
144_I	391_N	0.908	0.38
239_F	243_S	0.905	0.38
332_V	370_E	0.904	0.38
100_D	108_F	0.902	0.38
89_H	96_M	0.899	0.38
9_L	51_I	0.898	0.38
42_T	401_N	0.896	0.38
131_A	135_A	0.894	0.37
163_K	385_A	0.893	0.37
86_I	89_H	0.890	0.37
159_S	358_V	0.886	0.37
184_N	211_D	0.884	0.37
81_V	88_G	0.883	0.37
107_D	114_I	0.883	0.37
63_G	401_N	0.882	0.37
30_Y	171_F	0.881	0.37
268_F	277_S	0.881	0.37
265_L	268_F	0.879	0.37
104_M	123_F	0.876	0.36
84_V	89_H	0.873	0.36
80_E	88_G	0.873	0.36
7_V	53_P	0.872	0.36
156_L	274_A	0.869	0.36
11_F	192_Q	0.868	0.36
257_K	342_M	0.867	0.36
134_E	169_A	0.866	0.36
44_L	48_S	0.865	0.36
19_D	342_M	0.864	0.36
108_F	115_R	0.864	0.36
379_G	382_T	0.861	0.35
272_F	279_S	0.860	0.35
179_L	194_L	0.859	0.35
131_A	153_M	0.859	0.35
3_A	7_V	0.857	0.35
209_S	409_Y	0.857	0.35
24_F	90_K	0.849	0.35
166_L	190_A	0.849	0.35
38_A	225_L	0.845	0.34
329_I	358_V	0.843	0.34
262_I	292_I	0.842	0.34
69_L	72_N	0.841	0.34
41_S	210_H	0.840	0.34
278_K	281_Q	0.840	0.34
279_S	283_T	0.833	0.34
36_N	405_W	0.833	0.34
251_S	255_N	0.830	0.34
36_N	209_S	0.830	0.34
276_A	283_T	0.826	0.33
27_G	371_A	0.824	0.33
3_A	23_K	0.821	0.33
185_H	353_R	0.819	0.33
221_H	232_I	0.813	0.33
80_E	83_K	0.812	0.32
47_L	206_I	0.812	0.32
258_K	295_D	0.811	0.32
272_F	281_Q	0.810	0.32
44_L	178_L	0.808	0.32
38_A	356_L	0.808	0.32
92_L	96_M	0.807	0.32
350_F	376_F	0.804	0.32
223_A	384_Q	0.804	0.32
73_H	161_K	0.803	0.32
9_L	123_F	0.802	0.32
401_N	404_D	0.802	0.32
45_K	153_M	0.800	0.32
256_K	259_E	0.797	0.32
129_W	282_A	0.793	0.31
277_S	402_L	0.793	0.31
58_V	341_I	0.790	0.31
84_V	100_D	0.789	0.31
194_L	386_Y	0.788	0.31
32_L	351_T	0.787	0.31
360_T	363_K	0.783	0.31
153_M	164_V	0.782	0.31
329_I	401_N	0.779	0.31
275_N	286_K	0.776	0.30
7_V	55_T	0.776	0.30
210_H	361_L	0.771	0.30
8_S	55_T	0.770	0.30
44_L	135_A	0.770	0.30
62_P	118_E	0.767	0.30
5_N	21_N	0.766	0.30
154_A	189_Q	0.766	0.30
26_P	206_I	0.765	0.30
269_V	316_G	0.763	0.30
249_K	369_M	0.760	0.30
239_F	242_E	0.759	0.29
80_E	89_H	0.759	0.29
2_I	47_L	0.758	0.29
185_H	195_E	0.755	0.29
89_H	359_T	0.753	0.29
316_G	319_V	0.751	0.29
66_L	80_E	0.750	0.29
167_A	358_V	0.749	0.29
248_L	252_Q	0.748	0.29
30_Y	223_A	0.747	0.29
152_K	226_D	0.744	0.29
330_D	375_T	0.743	0.29
91_R	94_E	0.741	0.28
87_M	93_Y	0.741	0.28
306_Y	404_D	0.739	0.28
65_R	208_V	0.737	0.28
32_L	307_V	0.737	0.28
265_L	292_I	0.735	0.28
134_E	139_L	0.732	0.28
105_K	112_D	0.729	0.28
7_V	232_I	0.727	0.28
264_Q	315_I	0.723	0.28
224_D	231_Q	0.723	0.28
259_E	285_R	0.723	0.28
166_L	389_K	0.722	0.27
81_V	84_V	0.722	0.27
23_K	43_F	0.722	0.27
6_N	55_T	0.721	0.27
268_F	275_N	0.719	0.27
5_N	57_D	0.719	0.27
21_N	81_V	0.719	0.27
81_V	85_V	0.718	0.27
163_K	409_Y	0.714	0.27
46_V	356_L	0.713	0.27
293_T	304_Y	0.713	0.27
86_I	103_Y	0.710	0.27
194_L	224_D	0.710	0.27
65_R	69_L	0.709	0.27
235_G	243_S	0.707	0.27
158_G	354_N	0.706	0.27
32_L	206_I	0.706	0.27
328_T	365_I	0.705	0.27
162_V	391_N	0.701	0.26
359_T	363_K	0.699	0.26
190_A	334_V	0.698	0.26
275_N	283_T	0.698	0.26
141_G	209_S	0.696	0.26
158_G	190_A	0.693	0.26
11_F	20_V	0.693	0.26
199_I	324_G	0.692	0.26
239_F	246_L	0.691	0.26
139_L	176_V	0.691	0.26
18_E	24_F	0.688	0.26
89_H	168_Q	0.687	0.26
318_D	359_T	0.687	0.26
184_N	212_R	0.687	0.26
185_H	212_R	0.686	0.26
156_L	278_K	0.686	0.26
52_E	123_F	0.684	0.26
38_A	209_S	0.684	0.26
112_D	120_E	0.684	0.26
170_L	361_L	0.683	0.25
158_G	360_T	0.680	0.25
276_A	284_S	0.679	0.25
268_F	281_Q	0.678	0.25
22_I	43_F	0.677	0.25
74_F	77_E	0.677	0.25
19_D	230_I	0.676	0.25
187_D	354_N	0.674	0.25
150_T	373_S	0.671	0.25
9_L	46_V	0.671	0.25
65_R	71_Q	0.670	0.25
87_M	380_V	0.668	0.25
139_L	395_F	0.667	0.25
249_K	310_T	0.664	0.25
155_D	334_V	0.663	0.24
93_Y	96_M	0.663	0.24
164_V	191_I	0.662	0.24
355_E	360_T	0.662	0.24
291_K	315_I	0.661	0.24
231_Q	247_A	0.661	0.24
162_V	184_N	0.660	0.24
85_V	165_L	0.660	0.24
207_V	372_D	0.659	0.24
9_L	364_I	0.658	0.24
258_K	262_I	0.658	0.24
180_D	357_A	0.656	0.24
34_G	41_S	0.655	0.24
107_D	115_R	0.655	0.24
59_H	225_L	0.654	0.24
159_S	352_G	0.654	0.24
193_W	214_F	0.653	0.24
139_L	195_E	0.652	0.24
327_K	369_M	0.652	0.24
183_T	193_W	0.652	0.24
217_K	378_W	0.651	0.24
207_V	213_H	0.650	0.24
90_K	95_V	0.650	0.24
22_I	53_P	0.649	0.24
8_S	206_I	0.648	0.24
160_E	178_L	0.648	0.24
161_K	207_V	0.646	0.24
143_G	297_I	0.645	0.24
363_K	366_S	0.642	0.23
272_F	276_A	0.641	0.23
6_N	342_M	0.641	0.23
104_M	229_K	0.640	0.23
157_G	187_D	0.640	0.23
16_L	166_L	0.638	0.23
333_K	373_S	0.638	0.23
54_Q	390_D	0.634	0.23
67_A	303_R	0.634	0.23
365_I	375_T	0.634	0.23
104_M	119_L	0.632	0.23
36_N	210_H	0.632	0.23
128_G	195_E	0.631	0.23
40_K	181_E	0.628	0.23
107_D	112_D	0.626	0.23
29_C	185_H	0.625	0.23
9_L	92_L	0.624	0.23
194_L	214_F	0.622	0.23
289_L	309_F	0.621	0.22
136_A	387_F	0.621	0.22
342_M	378_W	0.620	0.22
39_G	42_T	0.619	0.22
34_G	42_T	0.619	0.22
27_G	161_K	0.617	0.22
268_F	276_A	0.616	0.22
88_G	103_Y	0.615	0.22
120_E	123_F	0.615	0.22
135_A	325_L	0.614	0.22
224_D	244_S	0.614	0.22
284_S	287_K	0.614	0.22
209_S	214_F	0.613	0.22
49_G	233_Y	0.612	0.22
84_V	96_M	0.612	0.22
134_E	208_V	0.611	0.22
83_K	169_A	0.609	0.22
119_L	123_F	0.609	0.22
267_E	271_R	0.608	0.22
159_S	187_D	0.608	0.22
184_N	214_F	0.607	0.22
331_G	336_D	0.607	0.22
213_H	365_I	0.607	0.22
350_F	380_V	0.605	0.22
200_N	222_I	0.604	0.22
109_S	115_R	0.603	0.22
143_G	219_C	0.603	0.22
89_H	93_Y	0.599	0.21
108_F	114_I	0.598	0.21
102_I	190_A	0.598	0.21
184_N	193_W	0.597	0.21
58_V	66_L	0.597	0.21
183_T	194_L	0.595	0.21
66_L	169_A	0.593	0.21
126_L	290_E	0.593	0.21
230_I	361_L	0.591	0.21
47_L	338_V	0.590	0.21
212_R	354_N	0.588	0.21
161_K	371_A	0.588	0.21
366_S	384_Q	0.587	0.21
26_P	253_E	0.585	0.21
158_G	167_A	0.585	0.21
190_A	327_K	0.585	0.21
168_Q	330_D	0.583	0.21
265_L	273_S	0.582	0.21
164_V	274_A	0.582	0.21
161_K	402_L	0.581	0.21
159_S	180_D	0.579	0.21
350_F	355_E	0.579	0.21
252_Q	406_L	0.579	0.21
62_P	256_K	0.578	0.21
162_V	405_W	0.576	0.20
111_E	114_I	0.576	0.20
166_L	354_N	0.576	0.20
61_S	260_E	0.575	0.20
275_N	279_S	0.574	0.20
152_K	350_F	0.573	0.20
233_Y	247_A	0.573	0.20
235_G	257_K	0.573	0.20
342_M	406_L	0.572	0.20
33_I	196_E	0.571	0.20
202_E	368_E	0.571	0.20
312_E	356_L	0.571	0.20
261_Q	265_L	0.570	0.20
315_I	379_G	0.570	0.20
60_M	176_V	0.570	0.20
179_L	184_N	0.569	0.20
113_G	116_A	0.569	0.20
35_A	45_K	0.568	0.20
1_M	377_K	0.568	0.20
138_L	168_Q	0.567	0.20
243_S	246_L	0.566	0.20
33_I	359_T	0.565	0.20
165_L	405_W	0.563	0.20
188_L	195_E	0.563	0.20
238_D	328_T	0.563	0.20
280_K	283_T	0.563	0.20
54_Q	211_D	0.563	0.20
331_G	339_S	0.562	0.20
51_I	198_L	0.560	0.20
48_S	359_T	0.559	0.20
223_A	363_K	0.558	0.20
107_D	118_E	0.558	0.20
162_V	197_F	0.557	0.20
1_M	32_L	0.557	0.20
128_G	163_K	0.557	0.20
131_A	365_I	0.556	0.20
9_L	42_T	0.556	0.20
36_N	184_N	0.555	0.20
257_K	280_K	0.554	0.20
111_E	119_L	0.554	0.20
211_D	354_N	0.554	0.20
9_L	190_A	0.550	0.19
109_S	112_D	0.549	0.19
164_V	231_Q	0.548	0.19
354_N	357_A	0.548	0.19
38_A	57_D	0.547	0.19
320_L	356_L	0.547	0.19
131_A	171_F	0.546	0.19
54_Q	209_S	0.545	0.19
286_K	290_E	0.545	0.19
46_V	51_I	0.544	0.19
7_V	19_D	0.543	0.19
167_A	392_S	0.542	0.19
165_L	351_T	0.541	0.19
4_V	204_T	0.539	0.19
51_I	338_V	0.538	0.19
114_I	118_E	0.538	0.19
71_Q	78_E	0.537	0.19
30_Y	58_V	0.536	0.19
272_F	284_S	0.536	0.19
116_A	128_G	0.535	0.19
323_E	404_D	0.534	0.19
329_I	389_K	0.534	0.19
164_V	186_L	0.532	0.19
91_R	176_V	0.532	0.19
102_I	106_P	0.531	0.19
111_E	115_R	0.531	0.19
253_E	256_K	0.530	0.19
193_W	237_Y	0.529	0.18
182_P	362_F	0.529	0.18
92_L	123_F	0.529	0.18
304_Y	317_N	0.528	0.18
35_A	235_G	0.527	0.18
90_K	93_Y	0.526	0.18
259_E	295_D	0.524	0.18
58_V	252_Q	0.524	0.18
241_Y	245_Q	0.523	0.18
139_L	163_K	0.523	0.18
279_S	286_K	0.520	0.18
270_A	293_T	0.520	0.18
183_T	340_F	0.519	0.18
386_Y	400_L	0.519	0.18
92_L	103_Y	0.518	0.18
26_P	323_E	0.518	0.18
153_M	165_L	0.517	0.18
21_N	400_L	0.516	0.18
153_M	351_T	0.516	0.18
33_I	392_S	0.516	0.18
296_D	317_N	0.516	0.18
273_S	283_T	0.516	0.18
160_E	213_H	0.516	0.18
95_V	102_I	0.515	0.18
150_T	383_S	0.514	0.18
287_K	293_T	0.512	0.18
29_C	195_E	0.512	0.18
166_L	382_T	0.511	0.18
2_I	11_F	0.510	0.18
58_V	410_S	0.509	0.18
292_I	299_P	0.509	0.18
82_L	85_V	0.508	0.18
289_L	295_D	0.508	0.18
311_P	314_E	0.507	0.18
47_L	334_V	0.507	0.18
51_I	79_Y	0.506	0.18
84_V	219_C	0.506	0.18
185_H	244_S	0.505	0.18
9_L	205_V	0.505	0.18
37_G	41_S	0.505	0.18
156_L	275_N	0.504	0.18
167_A	351_T	0.504	0.18
161_K	213_H	0.504	0.18
315_I	319_V	0.504	0.18
285_R	296_D	0.503	0.17
108_F	111_E	0.503	0.17
88_G	100_D	0.502	0.17
161_K	204_T	0.502	0.17
21_N	381_T	0.502	0.17
180_D	210_H	0.502	0.17
252_Q	376_F	0.501	0.17
22_I	312_E	0.500	0.17
1_M	284_S	0.500	0.17
190_A	389_K	0.500	0.17
185_H	211_D	0.500	0.17

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4finA	2	0.9389	100	0.302	Contact Map
4q9hA	1	0.9148	100	0.341	Contact Map
4f4cA	1	0.8759	100	0.352	Contact Map
2iw3A	2	0.8111	100	0.359	Contact Map
1yqtA	1	0.8593	100	0.383	Contact Map
3bk7A	1	0.8722	100	0.39	Contact Map
3ozxA	1	0.8463	100	0.392	Contact Map
3j16B	1	0.8667	100	0.406	Contact Map
3ux8A	2	0.7685	100	0.421	Contact Map
2vf7A	2	0.8352	100	0.509	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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