MOBA - BACSU - GREMLIN Contacts

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MOBA - Probable molybdenum cofactor guanylyltransferase

UniProt:	O31701	Sequences: MKHVNVLLAGGASRRFGEPKAFVKWKGRMLYECAKEALGEQTVIISRPEFIDRFQENGENEVYQDAEPFQGMGPLAGIYTAFKKTDGDLYTVLSCDTPLIQRRTMLELKRLMIAGADAVVPISDGQVQPLIAIYHKRIMPVLYDQLSEKRLRISDLLGRISVCYVQAENIGANPAEFININTRDDFSCLEEKSNSLKRD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	199 (181)
Sequences:	3452 (2748)
Seq/√Len:	204.2

ECOLI - MOBA MOCA
BACSU - MOBA PUCB
HALSA - Q9HR78
SULSO - Q7LXN3 Q97W15

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
28_R	36_E	4.896	1.00
6_V	81_A	3.065	1.00
21_A	95_C	3.045	1.00
29_M	32_E	3.019	1.00
4_V	87_G	2.901	1.00
16_F	23_V	2.817	1.00
91_T	105_M	2.732	1.00
99_L	189_L	2.732	1.00
152_R	155_D	2.425	1.00
85_T	90_Y	2.375	1.00
5_N	38_L	2.198	1.00
83_K	143_Y	2.187	1.00
23_V	186_F	2.112	1.00
117_D	161_S	1.932	1.00
118_A	160_I	1.878	1.00
127_V	164_Y	1.861	1.00
72_M	151_L	1.828	1.00
28_R	32_E	1.779	1.00
4_V	42_T	1.775	1.00
89_L	112_M	1.761	1.00
79_Y	143_Y	1.732	1.00
182_T	185_D	1.727	1.00
79_Y	83_K	1.711	1.00
6_V	90_Y	1.655	1.00
78_I	92_V	1.644	1.00
82_F	90_Y	1.644	1.00
89_L	135_H	1.628	1.00
4_V	85_T	1.627	1.00
150_R	155_D	1.615	1.00
97_T	131_I	1.598	1.00
9_A	45_I	1.573	1.00
78_I	153_I	1.571	1.00
18_E	23_V	1.558	1.00
89_L	133_I	1.552	1.00
100_I	131_I	1.526	1.00
12_A	71_G	1.515	1.00
16_F	183_R	1.506	1.00
117_D	135_H	1.501	1.00
122_I	164_Y	1.492	1.00
143_Y	147_S	1.478	1.00
38_L	93_L	1.468	1.00
28_R	33_C	1.457	1.00
122_I	166_Q	1.453	1.00
13_S	21_A	1.431	1.00
118_A	162_V	1.412	1.00
44_I	63_Y	1.411	1.00
145_Q	150_R	1.409	1.00
42_T	61_E	1.385	1.00
46_S	81_A	1.381	1.00
94_S	97_T	1.377	1.00
13_S	16_F	1.319	1.00
32_E	36_E	1.313	1.00
93_L	100_I	1.311	1.00
13_S	18_E	1.302	1.00
104_T	176_E	1.300	1.00
145_Q	156_L	1.296	1.00
24_K	27_G	1.291	1.00
144_D	148_E	1.272	1.00
118_A	157_L	1.271	1.00
186_F	190_E	1.267	1.00
123_S	128_Q	1.265	1.00
180_I	189_L	1.264	1.00
141_V	160_I	1.254	1.00
142_L	156_L	1.235	1.00
35_K	43_V	1.229	1.00
30_L	34_A	1.207	1.00
60_N	65_D	1.181	1.00
76_A	80_T	1.175	1.00
101_Q	176_E	1.169	1.00
94_S	131_I	1.168	1.00
91_T	133_I	1.162	1.00
111_L	163_C	1.151	1.00
117_D	137_R	1.130	1.00
138_I	160_I	1.127	1.00
187_S	190_E	1.123	1.00
178_I	189_L	1.117	1.00
117_D	162_V	1.113	1.00
25_W	30_L	1.109	1.00
94_S	134_Y	1.105	1.00
47_R	62_V	1.084	1.00
6_V	46_S	1.061	1.00
112_M	119_V	1.057	1.00
121_P	167_A	1.057	1.00
156_L	160_I	1.043	1.00
85_T	136_K	1.041	1.00
180_I	186_F	1.021	1.00
35_K	60_N	1.021	1.00
7_L	35_K	1.019	1.00
141_V	159_R	1.019	1.00
148_E	159_R	1.015	1.00
30_L	180_I	1.015	1.00
101_Q	104_T	1.006	1.00
5_N	34_A	1.005	1.00
123_S	126_Q	1.002	1.00
34_A	37_A	0.996	1.00
116_A	163_C	0.994	1.00
99_L	178_I	0.989	1.00
6_V	92_V	0.974	1.00
141_V	156_L	0.967	1.00
7_L	31_Y	0.967	1.00
58_G	61_E	0.967	1.00
120_V	127_V	0.959	0.99
106_L	110_R	0.946	0.99
19_P	22_F	0.941	0.99
83_K	139_M	0.940	0.99
34_A	93_L	0.936	0.99
120_V	164_Y	0.936	0.99
24_K	29_M	0.933	0.99
141_V	144_D	0.930	0.99
112_M	135_H	0.927	0.99
62_V	65_D	0.906	0.99
136_K	139_M	0.905	0.99
4_V	44_I	0.902	0.99
90_Y	136_K	0.902	0.99
145_Q	155_D	0.898	0.99
63_Y	80_T	0.897	0.99
122_I	127_V	0.897	0.99
73_G	76_A	0.896	0.99
29_M	33_C	0.892	0.99
184_D	188_C	0.891	0.99
33_C	37_A	0.890	0.99
167_A	177_F	0.881	0.99
26_K	33_C	0.881	0.99
23_V	183_R	0.879	0.99
109_K	133_I	0.876	0.99
155_D	158_G	0.873	0.99
184_D	187_S	0.870	0.99
72_M	149_K	0.867	0.99
68_P	79_Y	0.866	0.99
72_M	146_L	0.861	0.99
116_A	161_S	0.859	0.99
154_S	158_G	0.857	0.99
123_S	174_P	0.852	0.99
71_G	76_A	0.848	0.99
144_D	147_S	0.848	0.99
21_A	31_Y	0.848	0.99
18_E	183_R	0.847	0.99
75_L	142_L	0.843	0.99
81_A	90_Y	0.840	0.99
138_I	141_V	0.828	0.98
69_F	72_M	0.821	0.98
92_V	134_Y	0.820	0.98
24_K	28_R	0.819	0.98
157_L	162_V	0.814	0.98
120_V	132_A	0.804	0.98
185_D	188_C	0.801	0.98
10_G	77_G	0.791	0.98
178_I	188_C	0.782	0.98
88_D	135_H	0.779	0.98
97_T	130_L	0.776	0.98
74_P	77_G	0.771	0.98
120_V	162_V	0.768	0.98
115_G	161_S	0.766	0.97
72_M	76_A	0.765	0.97
42_T	87_G	0.763	0.97
132_A	157_L	0.762	0.97
109_K	112_M	0.762	0.97
24_K	190_E	0.762	0.97
16_F	180_I	0.760	0.97
118_A	121_P	0.755	0.97
103_R	107_E	0.754	0.97
111_L	119_V	0.752	0.97
104_T	121_P	0.746	0.97
88_D	136_K	0.740	0.97
3_H	109_K	0.734	0.97
52_D	55_Q	0.733	0.97
11_G	15_R	0.724	0.96
41_Q	87_G	0.724	0.96
130_L	134_Y	0.723	0.96
10_G	74_P	0.721	0.96
75_L	156_L	0.721	0.96
124_D	166_Q	0.718	0.96
47_R	50_F	0.717	0.96
58_G	65_D	0.714	0.96
115_G	119_V	0.714	0.96
78_I	134_Y	0.707	0.96
61_E	65_D	0.706	0.96
22_F	54_F	0.704	0.96
31_Y	35_K	0.701	0.96
37_A	102_R	0.701	0.96
44_I	84_K	0.697	0.96
76_A	79_Y	0.696	0.96
130_L	153_I	0.694	0.95
7_L	43_V	0.687	0.95
183_R	187_S	0.685	0.95
63_Y	84_K	0.685	0.95
141_V	145_Q	0.684	0.95
25_W	33_C	0.682	0.95
44_I	85_T	0.682	0.95
82_F	85_T	0.682	0.95
65_D	181_N	0.681	0.95
129_P	154_S	0.681	0.95
40_E	102_R	0.674	0.95
41_Q	46_S	0.669	0.95
81_A	85_T	0.663	0.94
42_T	46_S	0.661	0.94
21_A	54_F	0.660	0.94
35_K	39_G	0.660	0.94
16_F	19_P	0.653	0.94
93_L	105_M	0.650	0.94
126_Q	154_S	0.645	0.93
26_K	190_E	0.644	0.93
75_L	146_L	0.641	0.93
38_L	91_T	0.641	0.93
104_T	108_L	0.641	0.93
120_V	157_L	0.639	0.93
37_A	100_I	0.635	0.93
140_P	143_Y	0.635	0.93
13_S	186_F	0.633	0.93
13_S	19_P	0.627	0.92
53_R	56_E	0.625	0.92
49_E	54_F	0.624	0.92
3_H	133_I	0.620	0.92
123_S	167_A	0.618	0.92
48_P	73_G	0.615	0.92
122_I	125_G	0.610	0.91
127_V	154_S	0.609	0.91
99_L	175_A	0.598	0.91
3_H	105_M	0.597	0.90
140_P	144_D	0.597	0.90
55_Q	64_Q	0.595	0.90
25_W	189_L	0.594	0.90
119_V	165_V	0.593	0.90
19_P	49_E	0.590	0.90
10_G	15_R	0.590	0.90
145_Q	159_R	0.588	0.90
48_P	51_I	0.587	0.90
7_L	34_A	0.583	0.89
108_L	119_V	0.580	0.89
4_V	90_Y	0.577	0.89
34_A	100_I	0.575	0.89
108_L	133_I	0.575	0.89
10_G	130_L	0.574	0.89
20_K	96_D	0.570	0.88
144_D	159_R	0.569	0.88
154_S	157_L	0.560	0.87
30_L	186_F	0.559	0.87
79_Y	146_L	0.556	0.87
134_Y	157_L	0.556	0.87
77_G	81_A	0.550	0.87
22_F	58_G	0.550	0.87
88_D	137_R	0.546	0.86
30_L	189_L	0.546	0.86
65_D	77_G	0.546	0.86
51_I	64_Q	0.545	0.86
69_F	76_A	0.545	0.86
150_R	159_R	0.540	0.86
139_M	143_Y	0.540	0.86
34_A	107_E	0.538	0.85
6_V	44_I	0.537	0.85
19_P	48_P	0.536	0.85
46_S	74_P	0.536	0.85
128_Q	153_I	0.533	0.85
7_L	38_L	0.532	0.85
30_L	95_C	0.530	0.84
19_P	54_F	0.526	0.84
94_S	132_A	0.525	0.84
18_E	21_A	0.523	0.84
13_S	183_R	0.522	0.84
35_K	58_G	0.520	0.83
40_E	43_V	0.518	0.83
102_R	106_L	0.513	0.83
5_N	91_T	0.513	0.83
144_D	149_K	0.513	0.83
22_F	31_Y	0.512	0.82
65_D	179_N	0.510	0.82
16_F	185_D	0.508	0.82
32_E	56_E	0.506	0.82
73_G	151_L	0.504	0.81
8_L	11_G	0.503	0.81
129_P	153_I	0.500	0.81
177_F	181_N	0.500	0.81

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1e5kA	1	0.9196	100	0.327	Contact Map
3ngwA	2	0.9497	100	0.36	Contact Map
2e8bA	1	0.8744	100	0.362	Contact Map
2weeA	1	0.9045	100	0.391	Contact Map
3d5nA	2	0.8744	100	0.396	Contact Map
2wawA	1	0.9296	100	0.405	Contact Map
2px7A	2	0.8844	99.9	0.522	Contact Map
3rsbA	1	0.8241	99.9	0.527	Contact Map
2xmeA	3	0.8794	99.9	0.535	Contact Map
1vpaA	2	0.9548	99.9	0.537	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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