YKVU - BACSU - GREMLIN Contacts

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YKVU - Sporulation protein YkvU

UniProt:	O31686	Sequences: MNRFVKGIILLSIAAFFAECLEFVVNMILARELGEHGMGLYMSILPTIFLIIVIASLELPISISKFIAESNPKLHESMLRHAFRMTAIFTAFSTAAASIALPFIPVFDTYHPFIKGIVIGLIPVVAFTSIARGYFMGVQKMGKIAIANVLKKIIQLLCLFLFFQWYSFELDMAVLISLFVLVVSDVVVLVYLYSQFIMARRALSGQQHIHLRGKDVRKRLLAVSIPTTGLRIFHAVVNAIEPFLVKGALLAAGVAGTAAIDQYGMLAGVAVTIGSFPAFIAHSLMVVMIPSISEAYALSQYDIVLKRLKQSIFITLGYGIPAVWVMFQFAGPLTHLFFHSPEAQYYLQLLWPYFLFHLFVMPLQACLIGMGFVKEAFYHNVWSHIVALSMMYVLGSMENLQMLGIILGMNTGMILLTSLHYATICKALKVSVFLTGGTRTPRIEG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	445 (400)
Sequences:	15999 (13632)
Seq/√Len:	681.6

ECOLI - MURJ WZXC RFBX WZXE YGHQ MDTK DINF YEEO
BACSU - YKVU YABM SP5B YTGP TUAB EPSK YOEA NORM YPNP YISQ
HALSA - Q9HSW2 Q9HRT3 Q9HQQ5 Q9HRF2 Q9HN79 Q9HMS7 Q9HRF7
SULSO - Q97XT3 Q97XG2 Q7LXE2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
300_Q	303_I	5.048	1.00
218_K	222_A	3.592	1.00
100_A	103_F	3.328	1.00
140_K	143_K	3.117	1.00
344_Q	348_Q	2.936	1.00
372_F	375_E	2.850	1.00
327_F	348_Q	2.783	1.00
338_F	341_P	2.739	1.00
139_Q	294_E	2.716	1.00
374_K	378_Y	2.609	1.00
372_F	427_A	2.375	1.00
75_H	78_M	2.354	1.00
383_S	416_L	2.335	1.00
241_E	266_L	2.319	1.00
331_G	335_H	2.303	1.00
339_H	342_E	2.302	1.00
330_A	344_Q	2.300	1.00
67_I	137_G	2.278	1.00
325_V	329_F	2.257	1.00
330_A	348_Q	2.135	1.00
349_L	403_L	2.134	1.00
356_F	414_I	2.116	1.00
295_A	303_I	2.108	1.00
346_Y	402_M	2.095	1.00
214_K	218_K	2.079	1.00
241_E	391_M	2.073	1.00
229_G	377_F	2.063	1.00
294_E	298_L	2.062	1.00
306_K	310_Q	2.032	1.00
173_A	176_I	2.025	1.00
10_L	142_G	2.024	1.00
379_H	419_L	2.004	1.00
112_P	116_G	1.985	1.00
34_G	37_G	1.980	1.00
78_M	82_A	1.968	1.00
390_M	408_G	1.931	1.00
400_L	407_L	1.904	1.00
65_K	69_E	1.899	1.00
386_V	415_L	1.892	1.00
66_F	223_V	1.865	1.00
338_F	342_E	1.849	1.00
301_Y	305_L	1.831	1.00
31_R	339_H	1.830	1.00
332_P	335_H	1.786	1.00
349_L	410_N	1.765	1.00
98_S	116_G	1.757	1.00
329_F	332_P	1.754	1.00
334_T	347_L	1.714	1.00
244_L	397_M	1.696	1.00
319_G	358_L	1.692	1.00
42_M	267_A	1.686	1.00
213_G	216_V	1.684	1.00
331_G	348_Q	1.684	1.00
397_M	405_I	1.676	1.00
244_L	391_M	1.675	1.00
296_Y	370_M	1.653	1.00
30_A	269_V	1.649	1.00
308_L	366_C	1.645	1.00
41_Y	45_L	1.598	1.00
233_F	381_V	1.585	1.00
43_S	246_K	1.585	1.00
323_V	355_L	1.585	1.00
245_V	263_Y	1.582	1.00
331_G	344_Q	1.581	1.00
303_I	306_K	1.575	1.00
329_F	333_L	1.547	1.00
349_L	407_L	1.535	1.00
262_Q	402_M	1.531	1.00
134_Y	138_V	1.526	1.00
241_E	409_M	1.523	1.00
394_L	400_L	1.510	1.00
80_R	84_R	1.506	1.00
172_M	176_I	1.497	1.00
334_T	343_A	1.496	1.00
176_I	180_V	1.490	1.00
142_G	146_I	1.483	1.00
244_L	392_Y	1.478	1.00
102_P	112_P	1.477	1.00
404_G	408_G	1.475	1.00
79_L	82_A	1.474	1.00
139_Q	291_S	1.470	1.00
387_A	391_M	1.469	1.00
250_L	262_Q	1.469	1.00
353_Y	410_N	1.467	1.00
101_L	116_G	1.463	1.00
249_L	262_Q	1.461	1.00
309_K	313_F	1.460	1.00
345_Y	348_Q	1.458	1.00
356_F	417_T	1.453	1.00
394_L	408_G	1.448	1.00
305_L	309_K	1.442	1.00
69_E	371_G	1.436	1.00
345_Y	403_L	1.434	1.00
78_M	81_H	1.432	1.00
304_V	366_C	1.424	1.00
155_Q	184_S	1.419	1.00
346_Y	406_I	1.419	1.00
389_S	393_V	1.412	1.00
349_L	406_I	1.407	1.00
295_A	307_R	1.400	1.00
379_H	423_T	1.396	1.00
326_M	351_W	1.389	1.00
35_E	264_G	1.381	1.00
418_S	422_A	1.381	1.00
378_Y	382_W	1.380	1.00
408_G	412_G	1.372	1.00
44_I	118_V	1.370	1.00
26_N	272_T	1.369	1.00
35_E	265_M	1.367	1.00
82_A	86_T	1.366	1.00
302_D	306_K	1.363	1.00
42_M	264_G	1.362	1.00
288_M	311_S	1.361	1.00
226_P	377_F	1.358	1.00
140_K	199_A	1.355	1.00
274_G	350_L	1.344	1.00
393_V	398_E	1.339	1.00
81_H	85_M	1.338	1.00
154_I	187_V	1.335	1.00
303_I	307_R	1.330	1.00
17_F	149_V	1.330	1.00
401_Q	404_G	1.324	1.00
245_V	405_I	1.298	1.00
292_I	304_V	1.298	1.00
225_I	229_G	1.297	1.00
62_S	223_V	1.290	1.00
98_S	102_P	1.289	1.00
114_I	178_L	1.283	1.00
261_D	265_M	1.280	1.00
240_I	388_L	1.275	1.00
16_F	20_C	1.275	1.00
239_A	242_P	1.250	1.00
301_Y	370_M	1.249	1.00
334_T	344_Q	1.241	1.00
379_H	420_H	1.238	1.00
108_D	112_P	1.236	1.00
158_C	180_V	1.231	1.00
27_M	31_R	1.229	1.00
39_G	261_D	1.226	1.00
78_M	85_M	1.215	1.00
316_L	320_I	1.214	1.00
270_A	346_Y	1.208	1.00
157_L	161_L	1.208	1.00
25_V	156_L	1.207	1.00
245_V	266_L	1.207	1.00
233_F	384_H	1.206	1.00
190_V	194_S	1.196	1.00
394_L	399_N	1.195	1.00
393_V	399_N	1.189	1.00
23_F	27_M	1.189	1.00
265_M	343_A	1.179	1.00
270_A	343_A	1.178	1.00
326_M	347_L	1.173	1.00
394_L	398_E	1.166	1.00
14_A	145_A	1.165	1.00
403_L	406_I	1.164	1.00
323_V	327_F	1.159	1.00
308_L	363_L	1.158	1.00
88_I	92_F	1.154	1.00
160_F	164_Q	1.148	1.00
18_A	152_K	1.140	1.00
391_M	409_M	1.134	1.00
387_A	409_M	1.127	1.00
90_T	94_T	1.126	1.00
39_G	264_G	1.123	1.00
124_V	186_V	1.119	1.00
352_P	410_N	1.118	1.00
296_Y	304_V	1.118	1.00
43_S	263_Y	1.117	1.00
346_Y	403_L	1.116	1.00
68_A	137_G	1.112	1.00
219_R	371_G	1.111	1.00
41_Y	177_S	1.110	1.00
103_F	106_V	1.107	1.00
110_Y	113_F	1.102	1.00
233_F	377_F	1.093	1.00
226_P	374_K	1.091	1.00
245_V	249_L	1.089	1.00
147_A	191_Y	1.088	1.00
386_V	390_M	1.087	1.00
78_M	86_T	1.086	1.00
246_K	263_Y	1.081	1.00
292_I	369_G	1.080	1.00
56_S	60_P	1.080	1.00
270_A	350_L	1.077	1.00
269_V	338_F	1.074	1.00
391_M	397_M	1.073	1.00
249_L	402_M	1.071	1.00
102_P	116_G	1.070	1.00
141_M	287_V	1.067	1.00
381_V	385_I	1.064	1.00
120_G	182_V	1.064	1.00
237_V	387_A	1.059	1.00
120_G	123_P	1.058	1.00
20_C	24_V	1.058	1.00
101_L	104_I	1.056	1.00
103_F	107_F	1.054	1.00
124_V	189_L	1.047	1.00
400_L	404_G	1.047	1.00
363_L	421_Y	1.045	1.00
159_L	180_V	1.045	1.00
8_I	287_V	1.043	1.00
7_G	139_Q	1.041	1.00
330_A	347_L	1.040	1.00
34_G	341_P	1.040	1.00
179_F	183_V	1.039	1.00
324_W	328_Q	1.037	1.00
97_A	119_I	1.037	1.00
72_P	298_L	1.036	1.00
359_F	417_T	1.035	1.00
38_M	42_M	1.033	1.00
123_P	126_A	1.029	1.00
26_N	338_F	1.027	1.00
289_I	293_S	1.027	1.00
419_L	422_A	1.023	1.00
223_V	373_V	1.018	1.00
67_I	138_V	1.017	1.00
30_A	338_F	1.017	1.00
175_L	178_L	1.014	1.00
390_M	394_L	1.012	1.00
387_A	412_G	1.012	1.00
69_E	219_R	1.006	1.00
4_F	8_I	1.002	1.00
333_L	337_F	0.997	1.00
37_G	40_L	0.996	1.00
399_N	403_L	0.990	1.00
378_Y	381_V	0.988	1.00
29_L	177_S	0.985	1.00
11_L	287_V	0.983	1.00
270_A	347_L	0.983	1.00
327_F	330_A	0.982	1.00
8_I	284_L	0.978	1.00
221_L	224_S	0.975	1.00
66_F	219_R	0.971	1.00
245_V	402_M	0.971	1.00
302_D	305_L	0.968	1.00
241_E	387_A	0.965	1.00
230_L	376_A	0.963	1.00
363_L	420_H	0.963	1.00
102_P	106_V	0.961	1.00
348_Q	352_P	0.960	1.00
158_C	162_F	0.958	1.00
422_A	426_K	0.953	1.00
32_E	164_Q	0.953	1.00
327_F	352_P	0.953	1.00
27_M	30_A	0.946	1.00
131_A	193_Y	0.945	1.00
62_S	224_S	0.944	1.00
44_I	114_I	0.944	1.00
366_C	424_I	0.940	1.00
385_I	389_S	0.938	1.00
147_A	192_L	0.938	1.00
116_G	120_G	0.938	1.00
62_S	220_L	0.936	1.00
291_S	294_E	0.934	1.00
353_Y	356_F	0.933	1.00
105_P	111_H	0.931	1.00
415_L	419_L	0.928	1.00
28_I	32_E	0.928	1.00
65_K	371_G	0.927	1.00
49_F	53_V	0.927	1.00
410_N	413_M	0.926	1.00
334_T	338_F	0.924	1.00
69_E	73_K	0.921	1.00
15_A	19_E	0.919	1.00
161_L	164_Q	0.916	1.00
21_L	156_L	0.916	1.00
81_H	84_R	0.914	1.00
76_E	80_R	0.913	1.00
66_F	69_E	0.911	1.00
99_I	103_F	0.911	1.00
236_V	384_H	0.911	1.00
226_P	373_V	0.896	1.00
382_W	419_L	0.894	1.00
212_R	217_R	0.892	1.00
35_E	261_D	0.892	1.00
62_S	66_F	0.890	1.00
162_F	172_M	0.889	1.00
215_D	218_K	0.889	1.00
87_A	91_A	0.888	1.00
113_F	175_L	0.886	1.00
143_K	195_Q	0.876	1.00
81_H	213_G	0.875	1.00
368_I	376_A	0.873	1.00
179_F	182_V	0.872	1.00
64_S	133_G	0.872	1.00
321_P	324_W	0.866	1.00
8_I	12_S	0.865	1.00
310_Q	313_F	0.862	1.00
295_A	300_Q	0.861	1.00
119_I	123_P	0.859	1.00
11_L	145_A	0.859	1.00
304_V	370_M	0.858	1.00
353_Y	406_I	0.857	1.00
422_A	425_C	0.855	1.00
193_Y	197_I	0.853	1.00
63_I	67_I	0.852	1.00
88_I	91_A	0.849	1.00
343_A	346_Y	0.849	1.00
322_A	325_V	0.848	1.00
375_E	423_T	0.847	1.00
70_S	75_H	0.842	1.00
392_Y	398_E	0.839	1.00
264_G	267_A	0.839	1.00
71_N	79_L	0.839	1.00
35_E	341_P	0.837	1.00
242_P	263_Y	0.837	1.00
327_F	331_G	0.835	1.00
350_L	406_I	0.834	1.00
32_E	163_F	0.834	1.00
241_E	271_V	0.833	1.00
317_G	321_P	0.831	1.00
221_L	225_I	0.829	1.00
9_I	13_I	0.828	1.00
264_G	269_V	0.828	1.00
12_S	283_S	0.828	1.00
158_C	183_V	0.826	1.00
233_F	380_N	0.826	1.00
227_T	373_V	0.826	1.00
113_F	116_G	0.826	1.00
266_L	350_L	0.823	1.00
94_T	97_A	0.822	1.00
27_M	338_F	0.822	1.00
390_M	393_V	0.818	1.00
391_M	394_L	0.817	1.00
121_L	185_D	0.810	1.00
377_F	381_V	0.808	1.00
367_L	376_A	0.808	1.00
407_L	411_T	0.808	1.00
216_V	219_R	0.807	1.00
58_E	224_S	0.807	1.00
85_M	217_R	0.807	1.00
82_A	85_M	0.805	1.00
313_F	317_G	0.805	1.00
98_S	101_L	0.804	1.00
77_S	81_H	0.803	1.00
269_V	272_T	0.803	1.00
375_E	378_Y	0.802	1.00
6_K	142_G	0.800	1.00
180_V	184_S	0.799	1.00
29_L	159_L	0.798	1.00
388_L	392_Y	0.796	1.00
407_L	410_N	0.791	1.00
367_L	423_T	0.788	1.00
307_R	311_S	0.787	1.00
267_A	272_T	0.787	1.00
321_P	325_V	0.787	1.00
5_V	9_I	0.786	1.00
132_R	136_M	0.784	1.00
243_F	247_G	0.781	1.00
92_F	95_A	0.781	1.00
80_R	83_F	0.780	1.00
184_S	188_V	0.778	1.00
240_I	244_L	0.776	1.00
151_K	155_Q	0.775	1.00
101_L	112_P	0.771	1.00
158_C	161_L	0.766	1.00
379_H	383_S	0.765	1.00
191_Y	195_Q	0.764	1.00
46_P	242_P	0.764	1.00
97_A	101_L	0.763	1.00
352_P	355_L	0.763	1.00
223_V	227_T	0.762	1.00
28_I	160_F	0.761	1.00
41_Y	174_V	0.761	1.00
222_A	225_I	0.761	1.00
293_S	297_A	0.760	1.00
182_V	185_D	0.760	1.00
272_T	276_F	0.758	1.00
38_M	264_G	0.754	1.00
78_M	84_R	0.752	1.00
274_G	354_F	0.749	1.00
222_A	374_K	0.748	1.00
397_M	404_G	0.745	1.00
291_S	295_A	0.745	1.00
352_P	356_F	0.744	1.00
52_I	56_S	0.744	1.00
376_A	380_N	0.743	1.00
67_I	79_L	0.742	1.00
220_L	224_S	0.742	1.00
13_I	17_F	0.741	1.00
390_M	411_T	0.741	1.00
7_G	287_V	0.740	1.00
398_E	405_I	0.736	1.00
181_L	185_D	0.736	1.00
83_F	86_T	0.733	1.00
403_L	407_L	0.731	1.00
289_I	365_A	0.730	1.00
251_A	261_D	0.728	1.00
194_S	198_M	0.728	1.00
423_T	426_K	0.725	1.00
222_A	226_P	0.725	1.00
250_L	263_Y	0.724	1.00
117_I	182_V	0.723	1.00
135_F	196_F	0.722	1.00
12_S	16_F	0.721	1.00
289_I	369_G	0.721	1.00
232_I	236_V	0.720	1.00
69_E	297_A	0.716	1.00
235_A	239_A	0.715	1.00
109_T	113_F	0.715	1.00
27_M	337_F	0.715	1.00
391_M	405_I	0.710	1.00
78_M	216_V	0.710	1.00
156_L	160_F	0.709	1.00
295_A	298_L	0.707	1.00
81_H	217_R	0.704	1.00
153_I	157_L	0.702	1.00
311_S	362_P	0.698	1.00
63_I	86_T	0.697	1.00
287_V	290_P	0.697	1.00
38_M	269_V	0.696	1.00
155_Q	159_L	0.695	1.00
155_Q	180_V	0.694	1.00
83_F	131_A	0.694	1.00
92_F	96_A	0.693	1.00
94_T	98_S	0.688	1.00
230_L	377_F	0.686	1.00
381_V	384_H	0.685	1.00
124_V	182_V	0.685	1.00
125_V	185_D	0.684	1.00
10_L	14_A	0.684	1.00
96_A	100_A	0.683	1.00
21_L	25_V	0.682	1.00
271_V	275_S	0.682	1.00
373_V	376_A	0.677	1.00
26_N	30_A	0.677	1.00
239_A	243_F	0.675	1.00
327_F	351_W	0.675	1.00
101_L	105_P	0.675	1.00
28_I	164_Q	0.675	1.00
192_L	195_Q	0.674	1.00
273_I	338_F	0.674	1.00
79_L	86_T	0.674	1.00
230_L	380_N	0.672	1.00
363_L	417_T	0.671	1.00
365_A	368_I	0.669	1.00
128_T	189_L	0.669	1.00
48_I	122_I	0.668	1.00
281_A	285_M	0.666	1.00
217_R	221_L	0.666	1.00
102_P	105_P	0.661	1.00
315_T	358_L	0.659	1.00
93_S	97_A	0.656	1.00
64_S	68_A	0.655	1.00
315_T	362_P	0.654	1.00
33_L	174_V	0.653	1.00
26_N	38_M	0.652	1.00
45_L	49_F	0.651	1.00
49_F	52_I	0.650	1.00
79_L	83_F	0.648	1.00
263_Y	267_A	0.648	1.00
335_H	344_Q	0.647	1.00
353_Y	413_M	0.645	1.00
5_V	8_I	0.643	1.00
90_T	126_A	0.643	1.00
143_K	146_I	0.643	1.00
131_A	192_L	0.641	1.00
136_M	144_I	0.640	1.00
99_I	102_P	0.639	1.00
65_K	373_V	0.636	1.00
272_T	275_S	0.635	1.00
105_P	112_P	0.634	1.00
182_V	186_V	0.634	1.00
33_L	37_G	0.632	1.00
215_D	219_R	0.632	1.00
105_P	115_K	0.631	1.00
64_S	137_G	0.631	1.00
365_A	369_G	0.628	1.00
35_E	342_E	0.626	1.00
65_K	369_G	0.625	1.00
227_T	368_I	0.624	1.00
394_L	397_M	0.624	1.00
194_S	197_I	0.623	1.00
36_H	251_A	0.621	1.00
330_A	351_W	0.620	1.00
39_G	263_Y	0.620	1.00
117_I	179_F	0.617	1.00
334_T	342_E	0.615	1.00
117_I	175_L	0.613	1.00
116_G	119_I	0.613	1.00
272_T	338_F	0.611	1.00
197_I	200_R	0.611	1.00
391_M	408_G	0.610	1.00
274_G	277_P	0.610	1.00
269_V	343_A	0.609	1.00
70_S	78_M	0.608	1.00
91_A	95_A	0.607	1.00
409_M	412_G	0.605	1.00
40_L	251_A	0.603	1.00
239_A	275_S	0.603	1.00
419_L	423_T	0.602	1.00
95_A	99_I	0.598	1.00
70_S	216_V	0.597	1.00
195_Q	199_A	0.597	1.00
332_P	336_L	0.596	1.00
43_S	46_P	0.594	1.00
22_E	26_N	0.589	1.00
70_S	73_K	0.587	1.00
266_L	406_I	0.585	1.00
150_L	191_Y	0.585	1.00
318_Y	321_P	0.585	1.00
34_G	342_E	0.584	1.00
406_I	410_N	0.583	1.00
421_Y	425_C	0.583	1.00
414_I	418_S	0.583	1.00
199_A	202_A	0.582	1.00
79_L	134_Y	0.580	1.00
115_K	119_I	0.579	1.00
242_P	267_A	0.578	1.00
87_A	90_T	0.576	1.00
55_A	126_A	0.576	1.00
133_G	137_G	0.575	1.00
170_L	173_A	0.574	1.00
82_A	220_L	0.574	1.00
9_I	16_F	0.573	1.00
295_A	304_V	0.569	1.00
146_I	150_L	0.567	1.00
48_I	52_I	0.566	1.00
77_S	80_R	0.566	1.00
132_R	148_N	0.564	1.00
154_I	158_C	0.564	1.00
117_I	178_L	0.563	1.00
230_L	233_F	0.563	1.00
11_L	15_A	0.562	1.00
413_M	417_T	0.561	1.00
360_V	417_T	0.560	1.00
113_F	117_I	0.559	1.00
282_H	286_V	0.559	1.00
367_L	424_I	0.558	1.00
81_H	216_V	0.558	1.00
386_V	389_S	0.558	1.00
356_F	410_N	0.557	1.00
176_I	179_F	0.555	1.00
127_F	189_L	0.554	1.00
120_G	124_V	0.554	1.00
147_A	188_V	0.551	1.00
357_H	361_M	0.550	1.00
17_F	153_I	0.549	1.00
284_L	288_M	0.548	1.00
394_L	404_G	0.548	1.00
335_H	339_H	0.548	1.00
107_F	247_G	0.547	1.00
29_L	38_M	0.545	1.00
237_V	384_H	0.544	1.00
283_S	286_V	0.544	1.00
413_M	416_L	0.543	1.00
316_L	355_L	0.542	1.00
14_A	17_F	0.542	1.00
197_I	201_R	0.541	1.00
364_Q	376_A	0.540	1.00
269_V	334_T	0.540	1.00
22_E	27_M	0.539	1.00
200_R	203_L	0.539	1.00
159_L	163_F	0.538	1.00
30_A	38_M	0.538	1.00
231_R	235_A	0.538	1.00
117_I	121_L	0.538	1.00
60_P	133_G	0.537	1.00
315_T	319_G	0.536	1.00
389_S	392_Y	0.534	1.00
147_A	151_K	0.532	1.00
71_N	138_V	0.532	1.00
230_L	234_H	0.532	1.00
355_L	358_L	0.531	1.00
50_L	235_A	0.531	1.00
347_L	351_W	0.531	1.00
288_M	292_I	0.529	1.00
71_N	139_Q	0.527	1.00
142_G	145_A	0.526	1.00
324_W	327_F	0.526	1.00
135_F	143_K	0.526	1.00
387_A	390_M	0.524	1.00
41_Y	178_L	0.523	1.00
21_L	24_V	0.523	1.00
33_L	38_M	0.523	1.00
43_S	247_G	0.522	1.00
66_F	220_L	0.518	0.99
175_L	179_F	0.517	0.99
382_W	385_I	0.516	0.99
63_I	133_G	0.515	0.99
100_A	104_I	0.514	0.99
138_V	199_A	0.514	0.99
241_E	244_L	0.513	0.99
363_L	424_I	0.513	0.99
109_T	112_P	0.513	0.99
181_L	184_S	0.512	0.99
188_V	191_Y	0.512	0.99
398_E	404_G	0.511	0.99
17_F	20_C	0.510	0.99
188_V	192_L	0.508	0.99
17_F	21_L	0.507	0.99
14_A	149_V	0.507	0.99
112_P	115_K	0.505	0.99
177_S	181_L	0.503	0.99
6_K	9_I	0.502	0.99
423_T	427_A	0.501	0.99
335_H	340_S	0.501	0.99
43_S	242_P	0.501	0.99
44_I	178_L	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4lz6A	1	0.9371	100	0.304	Contact Map
4humA	1	0.9573	100	0.326	Contact Map
3w4tA	1	0.9258	100	0.333	Contact Map
3mktA	1	0.9573	100	0.343	Contact Map
2cfqA	1	0.8697	41.2	0.94	Contact Map
3o7qA	1	0.8157	26.5	0.946	Contact Map
3wdoA	1	0.8674	24.3	0.947	Contact Map
4xnjA	1	0.8472	23.7	0.947	Contact Map
1pw4A	1	0.4337	21.7	0.948	Contact Map
4tphA	2	0.8404	18	0.95	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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