MTNA - BACSU - GREMLIN Contacts

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MTNA - Methylthioribose-1-phosphate isomerase

UniProt:	O31662	Sequences: MTHSFAVPRSVEWKETAITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRGAPAIGITAAFGLALAAKDIETDNVTEFRRRLEDIKQYLNSSRPTAINLSWALERLSHSVENAISVNEAKTNLVHEAIQIQVEDEETCRLIGQNALQLFKKGDRIMTICNAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQISGVRTAPSNVPVFNPAFDITPHDLISGIITEKGIMTGNYEEEIEQLFKGEKVH	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	353 (299)
Sequences:	3138 (2107)
Seq/√Len:	121.8

BACSU - MTNA
HALSA - Q9HP11 Q9HPV9
SULSO - Q97UM6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
248_T	325_I	3.488	1.00
255_Y	264_F	3.282	1.00
106_R	127_E	3.148	1.00
42_F	93_S	2.811	1.00
258_A	324_L	2.761	1.00
43_D	47_T	2.687	1.00
37_T	40_D	2.585	1.00
159_I	192_C	2.571	1.00
283_C	286_D	2.570	1.00
178_Y	211_G	2.511	1.00
67_A	86_I	2.475	1.00
263_A	324_L	2.447	1.00
150_F	234_A	2.403	1.00
48_L	197_V	2.398	1.00
154_D	234_A	2.386	1.00
87_K	108_S	2.357	1.00
142_I	271_A	2.340	1.00
87_K	104_L	2.325	1.00
224_A	256_G	2.279	1.00
64_L	87_K	2.253	1.00
151_K	154_D	2.240	1.00
263_A	323_D	2.206	1.00
106_R	134_E	2.158	1.00
236_I	271_A	2.125	1.00
188_H	216_T	2.123	1.00
191_A	215_V	2.112	1.00
237_V	254_T	2.075	1.00
65_A	125_V	2.057	1.00
33_L	49_K	2.050	1.00
62_F	132_Q	2.036	1.00
217_L	310_V	2.020	1.00
219_T	222_M	1.998	1.00
91_N	105_E	1.974	1.00
91_N	101_S	1.952	1.00
116_S	119_E	1.952	1.00
42_F	89_Y	1.910	1.00
242_I	272_A	1.908	1.00
39_E	89_Y	1.892	1.00
84_E	108_S	1.875	1.00
107_L	124_L	1.862	1.00
122_T	126_H	1.848	1.00
75_N	78_E	1.841	1.00
235_V	261_A	1.831	1.00
157_M	192_C	1.824	1.00
304_R	308_S	1.819	1.00
147_L	183_K	1.784	1.00
155_R	233_S	1.770	1.00
215_V	310_V	1.753	1.00
144_Q	179_L	1.752	1.00
155_R	188_H	1.741	1.00
205_A	217_L	1.735	1.00
282_K	286_D	1.735	1.00
222_M	315_P	1.724	1.00
157_M	232_I	1.719	1.00
249_A	287_I	1.710	1.00
190_Y	232_I	1.708	1.00
35_L	41_V	1.693	1.00
43_D	49_K	1.680	1.00
217_L	306_A	1.670	1.00
133_V	137_E	1.640	1.00
291_E	313_F	1.614	1.00
62_F	129_I	1.603	1.00
141_L	144_Q	1.592	1.00
269_F	327_G	1.587	1.00
228_K	285_A	1.584	1.00
101_S	105_E	1.579	1.00
237_V	268_F	1.565	1.00
247_D	322_H	1.549	1.00
267_P	326_S	1.547	1.00
137_E	141_L	1.520	1.00
155_R	190_Y	1.509	1.00
239_A	272_A	1.483	1.00
154_D	233_S	1.467	1.00
152_K	186_G	1.460	1.00
239_A	242_I	1.460	1.00
176_P	271_A	1.456	1.00
127_E	130_Q	1.454	1.00
219_T	297_V	1.449	1.00
237_V	270_V	1.425	1.00
83_L	111_V	1.409	1.00
277_F	335_M	1.407	1.00
179_L	182_Q	1.406	1.00
84_E	112_E	1.394	1.00
248_T	270_V	1.386	1.00
188_H	214_D	1.382	1.00
226_T	313_F	1.381	1.00
254_T	320_T	1.367	1.00
295_E	298_R	1.352	1.00
126_H	130_Q	1.348	1.00
46_V	89_Y	1.344	1.00
157_M	257_L	1.332	1.00
88_Q	92_S	1.330	1.00
36_T	40_D	1.315	1.00
91_N	104_L	1.312	1.00
294_P	312_V	1.300	1.00
41_V	59_T	1.299	1.00
274_L	331_E	1.296	1.00
298_R	309_N	1.292	1.00
214_D	311_P	1.269	1.00
179_L	183_K	1.261	1.00
295_E	299_Q	1.259	1.00
135_D	139_C	1.251	0.99
148_Q	183_K	1.242	0.99
147_L	185_L	1.237	0.99
197_V	202_R	1.231	0.99
71_I	82_R	1.228	0.99
129_I	132_Q	1.224	0.99
64_L	107_L	1.214	0.99
150_F	154_D	1.213	0.99
144_Q	148_Q	1.213	0.99
152_K	185_L	1.205	0.99
243_A	281_V	1.202	0.99
255_Y	321_P	1.192	0.99
110_S	127_E	1.192	0.99
104_L	108_S	1.180	0.99
181_K	186_G	1.157	0.99
138_T	274_L	1.152	0.99
78_E	82_R	1.151	0.99
140_R	144_Q	1.144	0.99
148_Q	334_I	1.141	0.99
82_R	85_D	1.129	0.99
154_D	185_L	1.127	0.99
259_I	263_A	1.122	0.99
223_A	257_L	1.121	0.99
182_Q	211_G	1.120	0.99
225_H	228_K	1.118	0.99
125_V	129_I	1.113	0.99
42_F	92_S	1.110	0.99
218_I	226_T	1.105	0.99
335_M	339_Y	1.102	0.99
191_A	204_T	1.101	0.99
234_A	327_G	1.099	0.99
153_G	186_G	1.099	0.99
101_S	104_L	1.097	0.99
31_E	34_E	1.094	0.99
262_N	265_D	1.093	0.99
102_W	275_S	1.092	0.99
189_I	208_L	1.088	0.99
79_F	121_K	1.084	0.99
149_L	327_G	1.078	0.98
192_C	223_A	1.067	0.98
206_W	210_Q	1.065	0.98
224_A	259_I	1.064	0.98
241_R	278_D	1.062	0.98
129_I	133_V	1.061	0.98
147_L	179_L	1.049	0.98
180_A	234_A	1.049	0.98
140_R	179_L	1.048	0.98
197_V	316_A	1.047	0.98
336_T	339_Y	1.047	0.98
81_R	85_D	1.043	0.98
89_Y	92_S	1.043	0.98
223_A	256_G	1.042	0.98
209_M	310_V	1.041	0.98
93_S	101_S	1.040	0.98
227_M	235_V	1.039	0.98
154_D	180_A	1.036	0.98
227_M	261_A	1.028	0.98
297_V	312_V	1.027	0.98
84_E	88_Q	1.026	0.98
327_G	334_I	1.025	0.98
140_R	182_Q	1.011	0.98
143_G	179_L	1.007	0.98
192_C	257_L	1.004	0.98
58_I	132_Q	0.996	0.97
180_A	187_L	0.990	0.97
145_N	148_Q	0.981	0.97
127_E	131_I	0.980	0.97
225_H	313_F	0.975	0.97
69_K	125_V	0.975	0.97
38_K	89_Y	0.972	0.97
117_V	121_K	0.969	0.97
155_R	187_L	0.963	0.97
177_F	187_L	0.955	0.97
247_D	319_I	0.950	0.97
114_A	123_N	0.943	0.96
292_R	296_E	0.933	0.96
127_E	134_E	0.933	0.96
224_A	260_L	0.932	0.96
64_L	108_S	0.928	0.96
162_A	215_V	0.924	0.96
58_I	139_C	0.923	0.96
143_G	175_A	0.917	0.96
38_K	86_I	0.914	0.96
335_M	338_N	0.910	0.96
177_F	213_I	0.903	0.95
274_L	332_K	0.902	0.95
224_A	264_F	0.898	0.95
159_I	257_L	0.895	0.95
181_K	214_D	0.887	0.95
153_G	187_L	0.885	0.95
242_I	328_I	0.884	0.95
269_F	326_S	0.882	0.95
281_V	286_D	0.881	0.95
60_A	100_L	0.877	0.95
42_F	46_V	0.876	0.95
226_T	232_I	0.876	0.95
162_A	276_T	0.875	0.95
189_I	213_I	0.868	0.94
256_G	260_L	0.867	0.94
154_D	187_L	0.866	0.94
300_I	305_T	0.860	0.94
227_M	266_I	0.858	0.94
269_F	329_I	0.855	0.94
188_H	215_V	0.854	0.94
262_N	323_D	0.852	0.94
298_R	312_V	0.838	0.93
197_V	222_M	0.837	0.93
235_V	257_L	0.836	0.93
224_A	255_Y	0.832	0.93
150_F	156_I	0.827	0.93
141_L	145_N	0.822	0.93
292_R	316_A	0.819	0.92
193_E	220_D	0.819	0.92
299_Q	304_R	0.816	0.92
298_R	304_R	0.811	0.92
176_P	236_I	0.803	0.92
156_I	186_G	0.800	0.92
270_V	325_I	0.799	0.91
130_Q	134_E	0.798	0.91
109_H	112_E	0.796	0.91
109_H	113_N	0.794	0.91
231_Q	313_F	0.793	0.91
209_M	215_V	0.793	0.91
221_S	297_V	0.792	0.91
247_D	284_G	0.791	0.91
115_I	119_E	0.789	0.91
216_T	311_P	0.788	0.91
105_E	109_H	0.788	0.91
174_L	177_F	0.787	0.91
146_A	176_P	0.783	0.91
68_A	79_F	0.782	0.91
175_A	179_L	0.781	0.91
41_V	63_G	0.780	0.90
144_Q	183_K	0.776	0.90
108_S	111_V	0.770	0.90
93_S	104_L	0.770	0.90
108_S	112_E	0.768	0.90
106_R	131_I	0.768	0.90
80_R	112_E	0.766	0.90
301_S	305_T	0.756	0.89
239_A	248_T	0.747	0.88
201_S	217_L	0.746	0.88
175_A	178_Y	0.745	0.88
43_D	46_V	0.745	0.88
64_L	111_V	0.745	0.88
199_Q	251_K	0.743	0.88
248_T	328_I	0.740	0.88
178_Y	213_I	0.737	0.88
80_R	111_V	0.737	0.88
162_A	176_P	0.735	0.88
150_F	185_L	0.734	0.88
56_I	103_A	0.734	0.88
145_N	333_G	0.730	0.87
235_V	268_F	0.729	0.87
146_A	271_A	0.727	0.87
146_A	329_I	0.726	0.87
35_L	40_D	0.719	0.87
68_A	71_I	0.719	0.87
273_P	276_T	0.719	0.87
150_F	187_L	0.714	0.86
65_A	121_K	0.714	0.86
64_L	104_L	0.711	0.86
102_W	106_R	0.711	0.86
302_G	305_T	0.709	0.86
160_C	251_K	0.707	0.86
177_F	181_K	0.706	0.86
174_L	178_Y	0.704	0.85
223_A	260_L	0.702	0.85
41_V	66_L	0.701	0.85
138_T	142_I	0.697	0.85
227_M	264_F	0.694	0.85
130_Q	133_V	0.692	0.84
152_K	187_L	0.689	0.84
196_P	220_D	0.689	0.84
239_A	328_I	0.688	0.84
277_F	330_T	0.687	0.84
46_V	92_S	0.685	0.84
119_E	122_T	0.684	0.84
295_E	304_R	0.684	0.84
245_N	284_G	0.680	0.83
190_Y	231_Q	0.678	0.83
259_I	264_F	0.676	0.83
174_L	207_E	0.675	0.83
86_I	93_S	0.674	0.83
205_A	307_P	0.674	0.83
40_D	43_D	0.673	0.83
234_A	269_F	0.673	0.83
226_T	231_Q	0.673	0.83
63_G	66_L	0.672	0.83
60_A	103_A	0.670	0.82
156_I	234_A	0.670	0.82
177_F	189_I	0.667	0.82
118_N	122_T	0.666	0.82
160_C	199_Q	0.666	0.82
103_A	107_L	0.665	0.82
73_T	78_E	0.662	0.82
262_N	324_L	0.662	0.82
197_V	314_N	0.661	0.82
42_F	104_L	0.660	0.82
105_E	280_K	0.658	0.81
217_L	315_P	0.657	0.81
157_M	235_V	0.654	0.81
142_I	176_P	0.653	0.81
71_I	79_F	0.652	0.81
149_L	269_F	0.651	0.81
191_A	217_L	0.649	0.80
80_R	84_E	0.648	0.80
240_D	317_F	0.647	0.80
65_A	70_D	0.647	0.80
56_I	60_A	0.647	0.80
255_Y	259_I	0.646	0.80
240_D	251_K	0.645	0.80
299_Q	305_T	0.645	0.80
41_V	56_I	0.645	0.80
38_K	67_A	0.644	0.80
33_L	43_D	0.643	0.80
81_R	84_E	0.640	0.79
117_V	120_A	0.636	0.79
65_A	69_K	0.635	0.79
174_L	208_L	0.632	0.79
136_E	140_R	0.632	0.79
190_Y	218_I	0.630	0.78
55_A	59_T	0.629	0.78
121_K	125_V	0.628	0.78
160_C	250_N	0.627	0.78
50_V	59_T	0.627	0.78
57_G	102_W	0.627	0.78
151_K	185_L	0.626	0.78
151_K	233_S	0.624	0.78
294_P	311_P	0.620	0.77
90_L	104_L	0.619	0.77
79_F	117_V	0.616	0.77
160_C	194_T	0.615	0.77
209_M	307_P	0.615	0.77
76_V	80_R	0.615	0.77
191_A	205_A	0.615	0.77
234_A	267_P	0.614	0.77
39_E	43_D	0.610	0.76
58_I	131_I	0.610	0.76
176_P	179_L	0.610	0.76
74_D	78_E	0.608	0.76
329_I	334_I	0.608	0.76
87_K	91_N	0.608	0.76
68_A	121_K	0.607	0.76
293_D	298_R	0.604	0.75
64_L	83_L	0.604	0.75
132_Q	136_E	0.602	0.75
256_G	259_I	0.601	0.75
245_N	282_K	0.599	0.75
88_Q	91_N	0.598	0.75
153_G	185_L	0.598	0.75
72_E	121_K	0.597	0.75
156_I	177_F	0.594	0.74
78_E	81_R	0.593	0.74
274_L	277_F	0.589	0.74
151_K	234_A	0.589	0.74
155_R	231_Q	0.587	0.73
53_A	240_D	0.586	0.73
78_E	294_P	0.586	0.73
165_I	206_W	0.586	0.73
249_A	319_I	0.586	0.73
53_A	98_I	0.584	0.73
299_Q	308_S	0.583	0.73
258_A	268_F	0.577	0.72
71_I	121_K	0.574	0.72
180_A	186_G	0.574	0.72
162_A	248_T	0.573	0.72
245_N	322_H	0.572	0.72
176_P	269_F	0.572	0.72
67_A	71_I	0.571	0.71
138_T	331_E	0.571	0.71
38_K	70_D	0.568	0.71
60_A	90_L	0.567	0.71
251_K	290_E	0.567	0.71
198_L	201_S	0.566	0.71
194_T	251_K	0.566	0.71
304_R	307_P	0.565	0.71
251_K	317_F	0.563	0.70
149_L	336_T	0.563	0.70
147_L	334_I	0.563	0.70
224_A	263_A	0.559	0.70
243_A	247_D	0.559	0.70
242_I	248_T	0.557	0.70
300_I	303_V	0.557	0.70
240_D	250_N	0.557	0.70
79_F	120_A	0.556	0.69
60_A	101_S	0.555	0.69
200_G	220_D	0.555	0.69
62_F	125_V	0.553	0.69
149_L	334_I	0.552	0.69
123_N	126_H	0.551	0.69
103_A	131_I	0.551	0.69
82_R	295_E	0.550	0.69
79_F	218_I	0.550	0.69
41_V	67_A	0.548	0.68
319_I	322_H	0.548	0.68
264_F	324_L	0.546	0.68
267_P	337_G	0.545	0.68
243_A	284_G	0.543	0.68
82_R	86_I	0.543	0.68
205_A	310_V	0.540	0.67
259_I	324_L	0.540	0.67
250_N	292_R	0.537	0.67
34_E	43_D	0.537	0.67
162_A	216_T	0.537	0.67
71_I	86_I	0.535	0.66
107_L	111_V	0.533	0.66
196_P	200_G	0.530	0.66
63_G	67_A	0.529	0.66
85_D	89_Y	0.529	0.66
162_A	175_A	0.528	0.65
195_R	198_L	0.526	0.65
110_S	123_N	0.526	0.65
137_E	140_R	0.525	0.65
231_Q	315_P	0.524	0.65
134_E	137_E	0.520	0.64
38_K	42_F	0.520	0.64
193_E	196_P	0.520	0.64
42_F	86_I	0.518	0.64
114_A	120_A	0.518	0.64
126_H	133_V	0.517	0.64
31_E	36_T	0.516	0.64
62_F	65_A	0.515	0.64
260_L	264_F	0.515	0.64
176_P	329_I	0.514	0.63
221_S	257_L	0.513	0.63
96_T	292_R	0.513	0.63
72_E	118_N	0.512	0.63
195_R	200_G	0.511	0.63
57_G	275_S	0.511	0.63
149_L	180_A	0.511	0.63
142_I	147_L	0.510	0.63
188_H	311_P	0.509	0.63
181_K	213_I	0.509	0.63
46_V	93_S	0.508	0.62
94_R	290_E	0.507	0.62
272_A	328_I	0.507	0.62
244_K	281_V	0.507	0.62
200_G	204_T	0.506	0.62
194_T	199_Q	0.505	0.62
54_P	163_G	0.505	0.62
161_N	203_L	0.504	0.62
104_L	124_L	0.503	0.62
94_R	251_K	0.502	0.62
143_G	178_Y	0.501	0.61
155_R	226_T	0.501	0.61
40_D	49_K	0.500	0.61

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2yvkA	2	0.9858	100	0.092	Contact Map
4ldrA	2	0.9688	100	0.1	Contact Map
1t5oA	2	0.9632	100	0.11	Contact Map
1t9kA	2	0.9688	100	0.122	Contact Map
2a0uA	2	0.9887	100	0.128	Contact Map
3a11A	4	0.8924	100	0.185	Contact Map
3ecsA	4	0.8244	100	0.302	Contact Map
1vb5A	3	0.7762	100	0.372	Contact Map
1w2wB	2	0.4703	100	0.494	Contact Map
1w2wA	1	0.5241	100	0.651	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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