KTRD - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

KTRD - Ktr system potassium uptake protein D

UniProt:	O31658	Sequences: MRLKFGKLIQALSPAQLIALYYFLAVTVAVILLSLPAAHKPGADWTFIDALFTAVSSVSVTGLTVVDTADTFSTIGIFILAFVLQFGGIGIMTLGTFIWLIMGKRIGLKERKLIMVDQNQSQFSGIVNLMKQVLFLILWIEFFGGLILGTYFLTYYDSYQEAYLHGFFASISATTNGGFDITGNSMIPFRHDYFVQFITMLLIIFGAIGFPVLVEVKDFLFSKHRRYPFTLFTKITTITFGSLVLFGAIGIFALEANHAFAGKSWHDILFLSLFQSTATRSGGLATIDISQLSDSTLFFICALMFIGASPSSVGGGIRTTTFALNLLALFHFARGNKAVKVFKRELHPADLMKSLVVTMMAILLVFGATLILTITEKHSLLELLFEVCSAFGTTGLSLGITADLSSVGKCVIMIVMFIGRIGILTFLYLIGRKEIEANYHYPKERVIIG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	449 (408)
Sequences:	5128 (3844)
Seq/√Len:	190.3

ECOLI - TRKG TRKH
BACSU - KTRD KTRB
HALSA - Q9HQ81 Q9HMF7 Q9HPA9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
368_A	415_V	4.350	1.00
308_A	314_G	4.293	1.00
49_D	409_K	3.537	1.00
200_M	273_L	3.443	1.00
48_I	410_C	3.239	1.00
371_I	411_V	2.911	1.00
151_Y	192_D	2.678	1.00
288_D	291_Q	2.663	1.00
379_S	382_E	2.584	1.00
309_S	319_T	2.543	1.00
182_T	188_P	2.527	1.00
184_N	188_P	2.512	1.00
145_G	167_F	2.454	1.00
375_T	408_G	2.410	1.00
84_L	172_S	2.398	1.00
81_A	168_F	2.352	1.00
51_L	413_M	2.347	1.00
372_L	408_G	2.346	1.00
264_S	267_D	2.335	1.00
85_Q	141_E	2.256	1.00
148_L	199_T	2.172	1.00
375_T	407_V	2.138	1.00
159_Y	194_F	2.121	1.00
77_I	164_L	2.078	1.00
48_I	413_M	2.074	1.00
169_A	180_D	2.072	1.00
55_V	413_M	2.060	1.00
172_S	284_L	2.033	1.00
196_Q	270_F	2.019	1.00
369_T	384_L	2.010	1.00
30_V	47_F	2.010	1.00
196_Q	271_L	2.006	1.00
252_F	256_A	2.002	1.00
75_I	79_I	1.994	1.00
279_T	300_I	1.979	1.00
45_W	71_T	1.963	1.00
74_T	78_F	1.960	1.00
250_G	299_F	1.952	1.00
239_T	323_A	1.932	1.00
389_S	401_T	1.931	1.00
194_F	198_I	1.914	1.00
234_K	238_I	1.909	1.00
204_I	244_V	1.909	1.00
67_D	70_D	1.880	1.00
200_M	277_T	1.875	1.00
186_M	199_T	1.855	1.00
207_A	280_R	1.853	1.00
236_T	240_F	1.823	1.00
368_A	411_V	1.815	1.00
144_G	202_L	1.814	1.00
64_T	68_T	1.797	1.00
48_I	406_S	1.789	1.00
152_F	199_T	1.787	1.00
174_T	206_G	1.782	1.00
204_I	277_T	1.768	1.00
46_T	49_D	1.761	1.00
325_N	358_T	1.757	1.00
301_C	388_C	1.746	1.00
266_H	270_F	1.735	1.00
197_F	201_L	1.732	1.00
371_I	407_V	1.711	1.00
131_K	135_F	1.706	1.00
34_S	47_F	1.701	1.00
251_I	296_T	1.699	1.00
159_Y	198_I	1.675	1.00
158_S	162_A	1.671	1.00
365_V	388_C	1.655	1.00
196_Q	286_T	1.650	1.00
244_V	277_T	1.645	1.00
68_T	71_T	1.639	1.00
324_L	346_L	1.630	1.00
193_Y	270_F	1.623	1.00
149_G	166_G	1.618	1.00
317_I	322_F	1.614	1.00
389_S	394_T	1.596	1.00
182_T	189_F	1.594	1.00
145_G	170_S	1.579	1.00
232_F	236_T	1.565	1.00
153_L	158_S	1.546	1.00
281_S	394_T	1.544	1.00
382_E	398_L	1.538	1.00
248_A	273_L	1.536	1.00
197_F	270_F	1.515	1.00
330_F	334_R	1.502	1.00
190_R	271_L	1.490	1.00
63_L	401_T	1.483	1.00
369_T	387_V	1.477	1.00
306_I	319_T	1.477	1.00
149_G	163_Y	1.471	1.00
361_A	391_F	1.470	1.00
203_I	278_A	1.467	1.00
365_V	391_F	1.467	1.00
375_T	405_S	1.441	1.00
56_S	179_F	1.428	1.00
203_I	282_G	1.426	1.00
45_W	72_F	1.425	1.00
34_S	38_A	1.420	1.00
276_S	279_T	1.420	1.00
197_F	266_H	1.415	1.00
207_A	240_F	1.413	1.00
201_L	205_F	1.413	1.00
173_A	199_T	1.405	1.00
38_A	75_I	1.404	1.00
237_T	241_G	1.399	1.00
168_F	181_I	1.397	1.00
247_G	276_S	1.391	1.00
410_C	414_I	1.390	1.00
77_I	81_A	1.388	1.00
161_E	195_V	1.383	1.00
234_K	240_F	1.381	1.00
53_T	65_V	1.380	1.00
48_I	409_K	1.365	1.00
256_A	268_I	1.362	1.00
227_Y	230_T	1.354	1.00
242_S	246_F	1.351	1.00
19_A	417_F	1.347	1.00
84_L	177_G	1.342	1.00
378_H	400_I	1.339	1.00
45_W	66_V	1.334	1.00
55_V	417_F	1.328	1.00
165_H	182_T	1.325	1.00
151_Y	198_I	1.322	1.00
289_I	300_I	1.321	1.00
69_A	183_G	1.320	1.00
159_Y	195_V	1.318	1.00
159_Y	163_Y	1.316	1.00
51_L	410_C	1.312	1.00
161_E	165_H	1.299	1.00
197_F	273_L	1.297	1.00
410_C	413_M	1.295	1.00
251_I	300_I	1.290	1.00
368_A	387_V	1.288	1.00
229_F	233_T	1.272	1.00
47_F	51_L	1.269	1.00
246_F	250_G	1.267	1.00
169_A	181_I	1.262	1.00
40_K	73_S	1.261	1.00
233_T	236_T	1.259	1.00
275_Q	286_T	1.252	1.00
180_D	183_G	1.251	1.00
163_Y	167_F	1.250	1.00
378_H	383_L	1.240	1.00
197_F	269_L	1.231	1.00
187_I	285_A	1.230	1.00
30_V	51_L	1.228	1.00
245_L	248_A	1.225	1.00
173_A	284_L	1.223	1.00
57_S	179_F	1.223	1.00
301_C	384_L	1.222	1.00
297_L	398_L	1.218	1.00
74_T	164_L	1.212	1.00
302_A	306_I	1.209	1.00
30_V	55_V	1.203	1.00
148_L	202_L	1.194	1.00
37_A	83_V	1.192	1.00
248_A	252_F	1.189	1.00
190_R	193_Y	1.186	1.00
193_Y	196_Q	1.184	1.00
324_L	351_L	1.184	1.00
72_F	80_L	1.184	1.00
54_A	83_V	1.180	1.00
196_Q	200_M	1.171	1.00
49_D	65_V	1.168	1.00
68_T	183_G	1.164	1.00
306_I	322_F	1.164	1.00
43_A	73_S	1.161	1.00
289_I	292_L	1.159	1.00
184_N	187_I	1.157	1.00
267_D	271_L	1.151	1.00
244_V	279_T	1.146	1.00
81_A	164_L	1.146	1.00
215_E	230_T	1.142	1.00
414_I	418_I	1.141	1.00
173_A	202_L	1.137	1.00
151_Y	159_Y	1.136	1.00
328_A	355_L	1.135	1.00
365_V	369_T	1.132	1.00
271_L	275_Q	1.129	1.00
153_L	162_A	1.124	1.00
305_F	365_V	1.123	1.00
46_T	406_S	1.119	1.00
369_T	383_L	1.118	1.00
252_F	255_E	1.117	1.00
404_L	412_I	1.116	1.00
243_L	247_G	1.113	1.00
153_L	163_Y	1.108	1.00
187_I	288_D	1.106	1.00
137_I	141_E	1.100	1.00
148_L	152_F	1.098	1.00
263_K	271_L	1.095	1.00
265_W	269_L	1.094	1.00
51_L	55_V	1.094	1.00
190_R	196_Q	1.093	1.00
387_V	415_V	1.093	1.00
140_I	205_F	1.092	1.00
301_C	385_F	1.091	1.00
293_S	296_T	1.090	1.00
252_F	272_S	1.090	1.00
30_V	34_S	1.080	1.00
151_Y	194_F	1.074	1.00
66_V	72_F	1.074	1.00
197_F	200_M	1.071	1.00
81_A	167_F	1.064	1.00
25_A	58_V	1.056	1.00
203_I	277_T	1.054	1.00
310_P	320_T	1.053	1.00
148_L	195_V	1.053	1.00
371_I	375_T	1.049	1.00
241_G	245_L	1.043	1.00
200_M	248_A	1.043	1.00
135_F	139_W	1.040	1.00
324_L	354_S	1.038	1.00
233_T	237_T	1.037	1.00
289_I	398_L	1.036	1.00
227_Y	232_F	1.034	1.00
338_A	345_E	1.033	1.00
234_K	342_F	1.032	1.00
252_F	268_I	1.031	1.00
404_L	408_G	1.029	1.00
271_L	287_I	1.023	1.00
147_I	194_F	1.020	1.00
229_F	232_F	1.019	1.00
78_F	82_F	1.019	1.00
33_L	54_A	1.012	1.00
111_R	125_G	0.998	0.99
149_G	159_Y	0.995	0.99
37_A	75_I	0.988	0.99
297_L	382_E	0.988	0.99
85_Q	145_G	0.987	0.99
40_K	77_I	0.987	0.99
332_F	352_M	0.985	0.99
149_G	162_A	0.982	0.99
74_T	77_I	0.981	0.99
53_T	68_T	0.978	0.99
204_I	240_F	0.974	0.99
372_L	387_V	0.974	0.99
358_T	362_I	0.974	0.99
248_A	276_S	0.972	0.99
238_I	342_F	0.972	0.99
65_V	68_T	0.968	0.99
348_P	352_M	0.967	0.99
369_T	380_L	0.965	0.99
39_H	45_W	0.963	0.99
169_A	182_T	0.961	0.99
231_L	234_K	0.959	0.99
405_S	408_G	0.955	0.99
386_E	397_S	0.953	0.99
248_A	272_S	0.949	0.99
390_A	412_I	0.949	0.99
193_Y	197_F	0.948	0.99
364_L	418_I	0.946	0.99
20_L	24_L	0.944	0.99
400_I	403_D	0.940	0.99
231_L	236_T	0.936	0.99
372_L	412_I	0.935	0.99
38_A	73_S	0.934	0.99
81_A	171_I	0.934	0.99
387_V	412_I	0.931	0.99
235_I	323_A	0.931	0.99
193_Y	266_H	0.930	0.99
177_G	281_S	0.928	0.99
78_F	164_L	0.927	0.99
89_I	138_L	0.926	0.99
38_A	47_F	0.920	0.99
21_Y	91_I	0.919	0.99
181_I	189_F	0.919	0.99
326_L	330_F	0.917	0.99
180_D	185_S	0.917	0.99
234_K	255_E	0.917	0.99
373_T	383_L	0.916	0.99
271_L	286_T	0.907	0.99
295_S	370_L	0.906	0.99
125_G	128_N	0.904	0.99
148_L	173_A	0.903	0.99
67_D	183_G	0.899	0.99
145_G	163_Y	0.898	0.99
186_M	195_V	0.897	0.99
23_F	417_F	0.896	0.99
305_F	361_A	0.896	0.99
81_A	84_L	0.895	0.99
149_G	167_F	0.894	0.99
364_L	415_V	0.892	0.99
389_S	397_S	0.889	0.99
140_I	213_L	0.887	0.99
227_Y	231_L	0.880	0.99
235_I	240_F	0.877	0.99
235_I	238_I	0.876	0.99
244_V	273_L	0.876	0.99
304_M	394_T	0.875	0.99
290_S	297_L	0.873	0.99
228_P	232_F	0.872	0.99
236_T	255_E	0.872	0.99
150_T	153_L	0.870	0.99
237_T	240_F	0.867	0.99
235_I	239_T	0.855	0.98
232_F	238_I	0.854	0.98
407_V	411_V	0.851	0.98
294_D	381_L	0.849	0.98
68_T	80_L	0.848	0.98
227_Y	236_T	0.847	0.98
239_T	319_T	0.842	0.98
147_I	198_I	0.839	0.98
254_L	296_T	0.837	0.98
310_P	319_T	0.837	0.98
386_E	401_T	0.833	0.98
29_A	83_V	0.829	0.98
55_V	426_F	0.829	0.98
70_D	183_G	0.826	0.98
53_T	80_L	0.818	0.98
139_W	143_F	0.818	0.98
144_G	198_I	0.818	0.98
162_A	166_G	0.816	0.98
230_T	234_K	0.814	0.98
205_F	213_L	0.813	0.98
276_S	303_L	0.812	0.98
39_H	44_D	0.811	0.98
57_S	80_L	0.811	0.98
26_V	58_V	0.808	0.98
391_F	415_V	0.807	0.98
235_I	327_L	0.804	0.98
192_D	196_Q	0.803	0.98
243_L	319_T	0.803	0.98
106_I	127_V	0.803	0.98
327_L	339_V	0.801	0.98
149_G	153_L	0.799	0.98
66_V	69_A	0.796	0.98
248_A	269_L	0.794	0.97
200_M	204_I	0.792	0.97
251_I	276_S	0.790	0.97
35_L	39_H	0.789	0.97
162_A	165_H	0.789	0.97
144_G	174_T	0.788	0.97
68_T	72_F	0.788	0.97
327_L	341_V	0.788	0.97
408_G	412_I	0.787	0.97
190_R	263_K	0.784	0.97
254_L	374_I	0.782	0.97
239_T	326_L	0.782	0.97
329_L	360_M	0.775	0.97
290_S	398_L	0.774	0.97
247_G	303_L	0.774	0.97
299_F	370_L	0.770	0.97
207_A	308_A	0.770	0.97
248_A	251_I	0.769	0.97
81_A	172_S	0.769	0.97
266_H	269_L	0.766	0.97
328_A	351_L	0.765	0.97
275_Q	289_I	0.764	0.97
275_Q	300_I	0.760	0.97
403_D	406_S	0.757	0.97
331_H	339_V	0.757	0.97
47_F	410_C	0.756	0.97
304_M	389_S	0.756	0.97
373_T	380_L	0.754	0.97
388_C	392_G	0.750	0.96
31_I	51_L	0.747	0.96
360_M	424_L	0.746	0.96
247_G	299_F	0.745	0.96
141_E	145_G	0.743	0.96
35_L	75_I	0.743	0.96
146_L	150_T	0.738	0.96
176_N	280_R	0.738	0.96
236_T	239_T	0.737	0.96
152_F	186_M	0.737	0.96
168_F	172_S	0.737	0.96
262_G	268_I	0.735	0.96
89_I	137_I	0.731	0.96
292_L	296_T	0.729	0.96
153_L	159_Y	0.729	0.96
24_L	28_V	0.729	0.96
215_E	233_T	0.728	0.96
192_D	195_V	0.726	0.96
136_L	140_I	0.725	0.96
67_D	402_A	0.723	0.96
158_S	161_E	0.722	0.96
273_L	277_T	0.721	0.96
148_L	170_S	0.720	0.96
385_F	396_L	0.719	0.95
244_V	247_G	0.718	0.95
162_A	189_F	0.715	0.95
64_T	80_L	0.712	0.95
26_V	55_V	0.709	0.95
66_V	71_T	0.705	0.95
84_L	175_T	0.705	0.95
58_V	83_V	0.704	0.95
73_S	76_G	0.704	0.95
165_H	169_A	0.704	0.95
40_K	76_G	0.703	0.95
372_L	383_L	0.702	0.95
204_I	241_G	0.700	0.95
227_Y	234_K	0.700	0.95
48_I	412_I	0.700	0.95
240_F	255_E	0.697	0.95
287_I	292_L	0.696	0.95
325_N	329_L	0.696	0.95
236_T	251_I	0.696	0.95
372_L	375_T	0.693	0.94
70_D	182_T	0.692	0.94
269_L	273_L	0.692	0.94
228_P	231_L	0.692	0.94
240_F	244_V	0.690	0.94
361_A	392_G	0.689	0.94
232_F	240_F	0.689	0.94
301_C	381_L	0.689	0.94
163_Y	166_G	0.688	0.94
142_F	146_L	0.686	0.94
298_F	380_L	0.682	0.94
141_E	144_G	0.682	0.94
369_T	373_T	0.681	0.94
53_T	64_T	0.680	0.94
250_G	254_L	0.675	0.94
329_L	356_V	0.675	0.94
196_Q	275_Q	0.675	0.94
325_N	355_L	0.674	0.94
423_I	427_L	0.674	0.94
169_A	199_T	0.673	0.94
295_S	374_I	0.673	0.94
34_S	44_D	0.673	0.94
418_I	426_F	0.670	0.93
250_G	253_A	0.670	0.93
31_I	34_S	0.669	0.93
150_T	166_G	0.668	0.93
381_L	398_L	0.668	0.93
170_S	202_L	0.664	0.93
256_A	265_W	0.663	0.93
275_Q	278_A	0.661	0.93
234_K	237_T	0.661	0.93
254_L	295_S	0.660	0.93
385_F	397_S	0.660	0.93
247_G	251_I	0.660	0.93
331_H	348_P	0.660	0.93
39_H	71_T	0.654	0.93
219_F	226_R	0.653	0.93
176_N	282_G	0.652	0.92
265_W	268_I	0.652	0.92
372_L	378_H	0.651	0.92
145_G	149_G	0.651	0.92
244_V	248_A	0.650	0.92
176_N	313_V	0.650	0.92
231_L	235_I	0.649	0.92
186_M	189_F	0.649	0.92
160_Q	164_L	0.648	0.92
69_A	77_I	0.645	0.92
152_F	195_V	0.645	0.92
236_T	244_V	0.642	0.92
285_A	396_L	0.640	0.92
176_N	206_G	0.639	0.92
167_F	170_S	0.636	0.92
235_I	342_F	0.635	0.91
194_F	197_F	0.634	0.91
208_I	213_L	0.634	0.91
42_G	45_W	0.630	0.91
285_A	288_D	0.630	0.91
213_L	217_K	0.629	0.91
380_L	383_L	0.629	0.91
238_I	255_E	0.628	0.91
302_A	366_F	0.628	0.91
124_S	128_N	0.628	0.91
263_K	267_D	0.628	0.91
63_L	389_S	0.627	0.91
211_P	311_S	0.626	0.91
164_L	168_F	0.625	0.91
252_F	265_W	0.624	0.91
27_T	30_V	0.624	0.91
263_K	268_I	0.623	0.91
327_L	330_F	0.623	0.91
84_L	284_L	0.623	0.91
134_L	138_L	0.623	0.91
30_V	54_A	0.622	0.91
406_S	409_K	0.621	0.91
317_I	358_T	0.620	0.91
233_T	240_F	0.617	0.90
233_T	238_I	0.617	0.90
252_F	269_L	0.617	0.90
329_L	359_M	0.616	0.90
150_T	194_F	0.615	0.90
144_G	206_G	0.613	0.90
18_I	21_Y	0.611	0.90
298_F	302_A	0.607	0.90
149_G	170_S	0.605	0.89
23_F	27_T	0.602	0.89
117_D	120_Q	0.602	0.89
325_N	359_M	0.600	0.89
186_M	196_Q	0.599	0.89
250_G	295_S	0.598	0.89
187_I	190_R	0.597	0.89
138_L	142_F	0.596	0.89
238_I	242_S	0.596	0.89
236_T	309_S	0.595	0.89
26_V	59_S	0.594	0.89
50_A	54_A	0.594	0.89
313_V	318_R	0.594	0.89
409_K	413_M	0.592	0.88
63_L	390_A	0.591	0.88
94_L	138_L	0.587	0.88
348_P	351_L	0.586	0.88
244_V	276_S	0.583	0.88
401_T	404_L	0.583	0.88
375_T	411_V	0.581	0.87
64_T	69_A	0.580	0.87
378_H	404_L	0.578	0.87
49_D	402_A	0.578	0.87
84_L	171_I	0.576	0.87
31_I	245_L	0.576	0.87
31_I	47_F	0.573	0.87
23_F	426_F	0.573	0.87
38_A	50_A	0.571	0.87
185_S	286_T	0.570	0.86
43_A	76_G	0.567	0.86
251_I	254_L	0.566	0.86
231_L	237_T	0.564	0.86
239_T	243_L	0.563	0.86
63_L	396_L	0.562	0.86
391_F	423_I	0.560	0.86
146_L	149_G	0.559	0.85
169_A	284_L	0.559	0.85
136_L	213_L	0.558	0.85
298_F	369_T	0.558	0.85
363_L	367_G	0.556	0.85
372_L	390_A	0.555	0.85
144_G	148_L	0.555	0.85
132_Q	214_V	0.555	0.85
244_V	251_I	0.554	0.85
386_E	412_I	0.554	0.85
340_K	345_E	0.553	0.85
185_S	394_T	0.552	0.85
276_S	300_I	0.552	0.85
148_L	198_I	0.551	0.85
382_E	404_L	0.551	0.85
281_S	315_G	0.550	0.84
232_F	235_I	0.550	0.84
142_F	167_F	0.550	0.84
144_G	170_S	0.548	0.84
139_W	142_F	0.548	0.84
65_V	409_K	0.548	0.84
187_I	286_T	0.544	0.84
403_D	407_V	0.544	0.84
165_H	181_I	0.544	0.84
386_E	396_L	0.544	0.84
227_Y	238_I	0.543	0.84
114_I	117_D	0.540	0.83
230_T	236_T	0.540	0.83
383_L	387_V	0.540	0.83
396_L	401_T	0.540	0.83
71_T	74_T	0.538	0.83
372_L	411_V	0.538	0.83
275_Q	292_L	0.538	0.83
60_V	281_S	0.538	0.83
256_A	261_A	0.536	0.83
199_T	284_L	0.536	0.83
236_T	247_G	0.536	0.83
364_L	391_F	0.535	0.83
251_I	255_E	0.535	0.83
215_E	219_F	0.534	0.83
365_V	387_V	0.533	0.83
372_L	404_L	0.533	0.83
301_C	398_L	0.533	0.83
82_F	171_I	0.533	0.83
63_L	397_S	0.532	0.83
64_T	172_S	0.529	0.82
129_L	312_S	0.528	0.82
274_F	284_L	0.528	0.82
332_F	356_V	0.527	0.82
269_L	272_S	0.527	0.82
143_F	147_I	0.527	0.82
42_G	73_S	0.526	0.82
383_L	400_I	0.526	0.82
14_P	17_L	0.526	0.82
78_F	81_A	0.525	0.82
281_S	284_L	0.524	0.82
278_A	396_L	0.523	0.81
50_A	72_F	0.523	0.81
44_D	65_V	0.523	0.81
186_M	274_F	0.523	0.81
183_G	400_I	0.522	0.81
279_T	396_L	0.522	0.81
304_M	392_G	0.521	0.81
136_L	217_K	0.519	0.81
278_A	289_I	0.519	0.81
333_A	431_G	0.519	0.81
378_H	382_E	0.518	0.81
35_L	38_A	0.518	0.81
268_I	272_S	0.517	0.81
214_V	218_D	0.517	0.81
236_T	248_A	0.516	0.81
59_S	315_G	0.515	0.80
347_H	350_D	0.515	0.80
171_I	175_T	0.514	0.80
369_T	388_C	0.514	0.80
207_A	282_G	0.514	0.80
279_T	303_L	0.513	0.80
236_T	243_L	0.513	0.80
180_D	184_N	0.513	0.80
316_G	322_F	0.513	0.80
234_K	244_V	0.513	0.80
234_K	251_I	0.512	0.80
385_F	389_S	0.510	0.80
384_L	388_C	0.510	0.80
333_A	427_L	0.510	0.80
142_F	145_G	0.509	0.80
64_T	183_G	0.509	0.80
159_Y	162_A	0.509	0.80
59_S	311_S	0.507	0.79
285_A	289_I	0.506	0.79
34_S	50_A	0.505	0.79
370_L	374_I	0.504	0.79
324_L	328_A	0.504	0.79
331_H	334_R	0.503	0.79
185_S	189_F	0.501	0.79
308_A	319_T	0.501	0.79
226_R	230_T	0.500	0.79
71_T	183_G	0.500	0.79

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4j7cI	2	0.951	100	0.167	Contact Map
3pjzA	2	0.902	100	0.198	Contact Map
3ukmA	2	0.4276	97	0.934	Contact Map
4twkA	2	0.5323	95.2	0.944	Contact Map
4bw5A	2	0.5056	94.4	0.947	Contact Map
4wfeA	2	0.4321	93.7	0.948	Contact Map
1lnqA	6	0.1938	91.7	0.951	Contact Map
2k1eA	3	0.2138	91.5	0.952	Contact Map
3effK	4	0.2227	88.7	0.955	Contact Map
4gx0A	3	0.2205	88.2	0.955	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0116 seconds.