GREMLIN Database
YJDG - Uncharacterized N-acetyltransferase YjdG
UniProt: O31648 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 168 (150)
Sequences: 19056 (15106)
Seq/√Len: 1233.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
112_V148_K2.9241.00
133_A146_L2.9171.00
12_Q72_V2.9021.00
73_K76_N2.5891.00
12_Q18_L2.4771.00
135_C143_Q2.4011.00
5_E74_K2.2831.00
95_I128_V2.2521.00
31_K103_K2.2471.00
85_F122_A2.2001.00
135_C146_L2.1521.00
153_L156_K2.1361.00
6_T117_K2.0831.00
8_R113_E2.0481.00
144_K147_E2.0031.00
143_Q147_E1.9561.00
14_I70_I1.9321.00
97_I115_A1.8431.00
120_N124_S1.8391.00
70_I79_I1.8301.00
119_I151_F1.7931.00
28_Q103_K1.7551.00
129_S159_E1.6961.00
21_A79_I1.6811.00
119_I131_I1.6731.00
102_N105_H1.6501.00
72_V77_Y1.6481.00
10_R74_K1.6401.00
6_T113_E1.6371.00
143_Q153_L1.6271.00
83_T114_A1.6141.00
115_A149_L1.6121.00
117_K120_N1.5581.00
101_T111_C1.5491.00
99_F146_L1.4461.00
140_L143_Q1.4431.00
71_I101_T1.4171.00
147_E153_L1.4001.00
49_A53_F1.3571.00
99_F142_S1.3301.00
71_I114_A1.3231.00
137_H156_K1.3151.00
112_V145_T1.2971.00
73_K80_V1.2841.00
42_P45_D1.2751.00
130_R154_N1.2691.00
21_A78_E1.2261.00
5_E10_R1.2201.00
32_E106_R1.2151.00
10_R72_V1.2141.00
83_T118_L1.1991.00
121_W125_R1.1941.00
80_V105_H1.1841.00
16_I54_R1.1831.00
82_G100_A1.1621.00
73_K110_Y1.1561.00
122_A131_I1.1501.00
78_E104_S1.1431.00
111_C145_T1.1291.00
94_M132_T1.1291.00
50_I53_F1.1241.00
122_A126_E1.1231.00
46_F50_I1.1211.00
25_Q100_A1.1201.00
133_A151_F1.1181.00
121_W126_E1.1171.00
6_T9_L1.1081.00
33_L36_E1.1071.00
50_I54_R1.1071.00
78_E105_H1.0951.00
96_E134_R1.0921.00
69_W118_L1.0801.00
20_D43_N1.0651.00
52_Y56_I1.0561.00
145_T149_L1.0461.00
21_A24_K1.0461.00
25_Q102_N1.0421.00
73_K108_K1.0391.00
142_S146_L1.0301.00
146_L151_F1.0291.00
106_R141_G1.0131.00
28_Q31_K1.0101.00
19_L50_I0.9951.00
112_V116_Q0.9931.00
45_D48_E0.9911.00
19_L47_F0.9841.00
69_W121_W0.9791.00
73_K78_E0.9781.00
103_K106_R0.9711.00
154_N158_A0.9711.00
14_I82_G0.9691.00
31_K34_G0.9681.00
28_Q102_N0.9591.00
28_Q104_S0.9581.00
43_N47_F0.9211.00
26_D100_A0.9161.00
23_S27_H0.9061.00
122_A128_V0.9001.00
72_V79_I0.8931.00
89_P92_N0.8911.00
51_P55_E0.8861.00
116_Q120_N0.8851.00
140_L144_K0.8841.00
10_R77_Y0.8801.00
107_R141_G0.8751.00
85_F118_L0.8721.00
119_I149_L0.8701.00
112_V149_L0.8701.00
9_L114_A0.8661.00
9_L110_Y0.8571.00
116_Q149_L0.8491.00
19_L23_S0.8431.00
47_F50_I0.8401.00
18_L72_V0.8381.00
99_F111_C0.8381.00
113_E117_K0.8331.00
101_T110_Y0.8321.00
140_L147_E0.8311.00
24_K102_N0.8301.00
94_M130_R0.8301.00
44_S48_E0.8211.00
24_K104_S0.8151.00
46_F49_A0.8071.00
35_Y138_D0.8031.00
24_K28_Q0.8031.00
51_P54_R0.7971.00
134_R157_S0.7971.00
71_I83_T0.7911.00
105_H108_K0.7861.00
78_E102_N0.7781.00
21_A102_N0.7771.00
20_D24_K0.7731.00
73_K105_H0.7701.00
6_T11_L0.7641.00
47_F51_P0.7611.00
24_K78_E0.7461.00
12_Q70_I0.7441.00
35_Y136_E0.7431.00
115_A145_T0.7401.00
135_C142_S0.7331.00
16_I19_L0.7211.00
37_T40_E0.7181.00
112_V141_G0.7151.00
44_S47_F0.7001.00
107_R144_K0.7001.00
49_A52_Y0.6991.00
23_S43_N0.6961.00
96_E132_T0.6891.00
133_A142_S0.6881.00
71_I110_Y0.6851.00
48_E52_Y0.6841.00
71_I81_G0.6841.00
107_R112_V0.6811.00
68_S84_G0.6811.00
48_E51_P0.6741.00
40_E46_F0.6691.00
26_D82_G0.6521.00
7_N113_E0.6521.00
43_N49_A0.6501.00
41_W45_D0.6451.00
99_F115_A0.6421.00
80_V110_Y0.6421.00
101_T106_R0.6411.00
111_C115_A0.6391.00
16_I51_P0.6381.00
137_H143_Q0.6331.00
8_R109_G0.6331.00
144_K148_K0.6331.00
20_D46_F0.6301.00
141_G144_K0.6291.00
32_E36_E0.6281.00
13_T61_N0.6261.00
16_I50_I0.6251.00
93_G129_S0.6251.00
40_E43_N0.6241.00
32_E35_Y0.6171.00
61_N67_D0.6171.00
110_Y113_E0.6081.00
86_L96_E0.6081.00
101_T105_H0.6031.00
52_Y55_E0.6001.00
152_I158_A0.5981.00
38_N41_W0.5941.00
132_T157_S0.5931.00
119_I123_L0.5871.00
71_I111_C0.5861.00
99_F145_T0.5831.00
12_Q15_D0.5801.00
25_Q79_I0.5791.00
83_T115_A0.5771.00
107_R145_T0.5761.00
55_E63_T0.5671.00
85_F95_I0.5651.00
79_I82_G0.5621.00
95_I131_I0.5611.00
15_D18_L0.5601.00
97_I131_I0.5531.00
36_E100_A0.5531.00
21_A72_V0.5531.00
31_K106_R0.5501.00
43_N46_F0.5481.00
20_D23_S0.5461.00
9_L113_E0.5411.00
131_I151_F0.5361.00
7_N10_R0.5351.00
45_D50_I0.5331.00
22_A26_D0.5321.00
154_N157_S0.5301.00
143_Q146_L0.5251.00
99_F133_A0.5231.00
29_A32_E0.5211.00
95_I122_A0.5181.00
74_K113_E0.5161.00
29_A103_K0.5151.00
53_F56_I0.5141.00
120_N125_R0.5141.00
29_A34_G0.5141.00
68_S100_A0.5121.00
94_M157_S0.5081.00
115_A151_F0.5081.00
22_A82_G0.5051.00
101_T114_A0.5051.00
98_G142_S0.5011.00
19_L43_N0.5001.00
155_H158_A0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2fckA 2 0.9524 99.9 0.322 Contact Map
2vzyA 3 0.8869 99.9 0.328 Contact Map
3pzjA 2 0.9583 99.9 0.331 Contact Map
3r9fA 1 0.9762 99.9 0.334 Contact Map
1yreA 2 0.9167 99.9 0.34 Contact Map
1s7kA 2 0.8571 99.9 0.343 Contact Map
1nslA 3 0.9643 99.9 0.349 Contact Map
3fbuA 2 0.9286 99.9 0.359 Contact Map
3igrA 2 0.994 99.9 0.362 Contact Map
2z10A 2 0.9345 99.9 0.364 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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