MANA1 - BACSU - GREMLIN Contacts

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MANA1 - Mannose-6-phosphate isomerase ManA

UniProt:	O31646	Sequences: MTTEPLFFKPVFKERIWGGTALADFGYTIPSQRTGECWAFAAHQNGQSVVQNGMYKGFTLSELWEHHRHLFGQLEGDRFPLLTKILDADQDLSVQVHPNDEYANIHENGELGKTECWYIIDCQKDAEIIYGHNATTKEELTTMIERGEWDELLRRVKVKPGDFFYVPSGTVHAIGKGILALETQQNSDTTYRLYDYDRKDAEGKLRELHLKKSIEVIEVPSIPERHTVHHEQIEDLLTTTLIECAYFSVGKWNLSGSASLKQQKPFLLISVIEGEGRMISGEYVYPFKKGDHMLLPYGLGEFKLEGYAECIVSHL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	315 (289)
Sequences:	3142 (2369)
Seq/√Len:	139.4

ECOLI - MANA
BACSU - MANA1 MANA3 MANA2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
127_E	155_R	4.369	1.00
7_F	291_D	3.508	1.00
121_D	160_P	3.040	1.00
58_F	66_H	2.985	1.00
158_V	178_I	2.817	1.00
142_T	146_R	2.793	1.00
125_D	157_K	2.735	1.00
117_W	179_L	2.595	1.00
15_R	35_G	2.562	1.00
50_V	63_L	2.494	1.00
277_R	305_E	2.437	1.00
171_V	193_L	2.424	1.00
277_R	284_V	2.403	1.00
102_Y	216_V	2.395	1.00
21_A	24_D	2.389	1.00
127_E	157_K	2.387	1.00
101_E	105_I	2.363	1.00
141_T	145_E	2.351	1.00
197_D	205_L	2.316	1.00
165_Y	244_C	2.219	1.00
20_T	24_D	2.198	1.00
251_K	309_E	2.171	1.00
58_F	62_E	2.169	1.00
275_E	288_K	2.158	1.00
59_T	62_E	2.147	1.00
148_E	151_E	2.137	1.00
20_T	23_A	2.075	1.00
171_V	217_I	2.068	1.00
273_E	309_E	2.064	1.00
125_D	159_K	2.041	1.00
279_I	284_V	2.017	1.00
277_R	286_P	2.012	1.00
47_Q	61_S	2.007	1.00
9_K	51_Q	1.999	1.00
100_D	111_L	1.965	1.00
43_H	46_G	1.964	1.00
52_N	56_K	1.954	1.00
136_T	139_E	1.943	1.00
110_E	189_T	1.936	1.00
276_G	308_A	1.929	1.00
107_E	212_K	1.906	1.00
102_Y	106_H	1.901	1.00
273_E	289_K	1.884	1.00
287_F	293_M	1.857	1.00
288_K	291_D	1.854	1.00
285_Y	293_M	1.778	1.00
45_N	188_D	1.755	1.00
93_S	192_R	1.750	1.00
16_I	205_L	1.722	1.00
212_K	215_E	1.721	1.00
9_K	49_V	1.713	1.00
181_L	270_S	1.689	1.00
100_D	104_N	1.685	1.00
62_E	66_H	1.679	1.00
49_V	59_T	1.678	1.00
99_N	102_Y	1.673	1.00
275_E	286_P	1.670	1.00
270_S	292_H	1.636	1.00
280_S	283_Y	1.627	1.00
253_N	309_E	1.620	1.00
191_Y	216_V	1.599	1.00
83_T	183_T	1.588	1.00
279_I	303_K	1.567	1.00
63_L	70_L	1.566	1.00
304_L	308_A	1.560	1.00
133_N	154_R	1.540	1.00
257_S	305_E	1.540	1.00
20_T	32_Q	1.534	1.00
29_I	34_T	1.488	1.00
271_V	274_G	1.487	1.00
61_S	65_E	1.485	1.00
39_A	292_H	1.474	1.00
100_D	112_G	1.473	1.00
10_P	292_H	1.440	1.00
279_I	305_E	1.440	1.00
267_L	302_F	1.440	1.00
276_G	293_M	1.434	1.00
96_V	216_V	1.403	1.00
296_P	299_L	1.397	1.00
147_G	197_D	1.392	1.00
7_F	285_Y	1.379	1.00
95_Q	190_T	1.373	1.00
255_S	307_Y	1.355	1.00
83_T	181_L	1.339	1.00
159_K	162_D	1.320	1.00
118_Y	249_V	1.314	1.00
64_W	71_F	1.314	1.00
62_E	65_E	1.309	1.00
114_T	168_S	1.290	1.00
96_V	217_I	1.278	1.00
36_E	84_K	1.261	1.00
13_K	46_G	1.261	1.00
141_T	214_I	1.259	1.00
121_D	179_L	1.258	1.00
93_S	206_R	1.258	1.00
39_A	268_L	1.257	1.00
78_R	110_E	1.241	1.00
259_S	301_E	1.239	1.00
261_K	301_E	1.236	1.00
55_Y	63_L	1.234	1.00
19_G	87_D	1.233	1.00
114_T	165_Y	1.228	1.00
16_I	90_Q	1.219	1.00
11_V	46_G	1.218	1.00
101_E	104_N	1.213	1.00
140_L	219_V	1.207	1.00
128_I	164_F	1.199	1.00
120_I	272_I	1.199	1.00
43_H	186_N	1.194	1.00
102_Y	215_E	1.189	1.00
137_K	215_E	1.182	1.00
129_I	155_R	1.173	1.00
21_A	25_F	1.172	1.00
112_G	185_Q	1.159	0.99
10_P	37_C	1.156	0.99
23_A	34_T	1.152	0.99
85_I	181_L	1.150	0.99
134_A	139_E	1.143	0.99
78_R	111_L	1.141	0.99
9_K	57_G	1.119	0.99
20_T	31_S	1.108	0.99
37_C	292_H	1.108	0.99
239_T	251_K	1.106	0.99
116_C	249_V	1.105	0.99
257_S	303_K	1.104	0.99
183_T	249_V	1.103	0.99
237_L	250_G	1.095	0.99
82_L	184_Q	1.088	0.99
140_L	193_L	1.076	0.99
6_L	63_L	1.069	0.99
137_K	141_T	1.068	0.99
104_N	110_E	1.067	0.99
193_L	217_I	1.064	0.99
276_G	287_F	1.060	0.99
193_L	213_S	1.059	0.99
162_D	228_V	1.050	0.99
87_D	179_L	1.041	0.99
184_Q	190_T	1.037	0.99
119_I	178_I	1.035	0.99
167_P	170_T	1.032	0.99
21_A	179_L	1.031	0.99
158_V	164_F	1.028	0.99
90_Q	176_K	1.023	0.99
271_V	287_F	1.021	0.99
132_H	217_I	1.017	0.99
109_G	189_T	1.014	0.99
275_E	307_Y	1.013	0.99
25_F	28_T	1.010	0.98
279_I	282_E	1.007	0.98
132_H	219_V	1.004	0.98
31_S	34_T	1.001	0.98
170_T	218_E	0.998	0.98
295_L	302_F	0.997	0.98
269_I	293_M	0.994	0.98
114_T	185_Q	0.994	0.98
306_G	309_E	0.980	0.98
116_C	183_T	0.974	0.98
14_E	32_Q	0.973	0.98
23_A	32_Q	0.969	0.98
8_F	294_L	0.968	0.98
165_Y	247_F	0.966	0.98
116_C	163_F	0.959	0.98
83_T	249_V	0.953	0.98
53_G	57_G	0.950	0.98
17_W	93_S	0.947	0.98
43_H	47_Q	0.942	0.98
192_R	206_R	0.941	0.98
280_S	299_L	0.939	0.98
191_Y	212_K	0.933	0.97
287_F	308_A	0.930	0.97
19_G	178_I	0.926	0.97
129_I	175_G	0.926	0.97
278_M	293_M	0.919	0.97
86_L	174_I	0.918	0.97
9_K	56_K	0.915	0.97
10_P	39_A	0.915	0.97
27_Y	37_C	0.911	0.97
106_H	212_K	0.910	0.97
52_N	55_Y	0.901	0.97
38_W	48_S	0.898	0.97
88_A	174_I	0.896	0.97
55_Y	58_F	0.894	0.97
130_Y	153_L	0.893	0.97
14_E	31_S	0.893	0.97
135_T	152_L	0.889	0.97
36_E	82_L	0.874	0.96
70_L	294_L	0.865	0.96
85_I	120_I	0.861	0.96
107_E	191_Y	0.859	0.96
106_H	215_E	0.857	0.96
42_A	78_R	0.856	0.96
273_E	307_Y	0.854	0.96
139_E	143_M	0.849	0.96
70_L	296_P	0.848	0.96
130_Y	166_V	0.841	0.95
38_W	84_K	0.840	0.95
112_G	246_Y	0.837	0.95
138_E	142_T	0.833	0.95
53_G	56_K	0.826	0.95
226_H	229_H	0.823	0.95
118_Y	163_F	0.820	0.95
198_R	206_R	0.816	0.95
50_V	53_G	0.816	0.95
68_R	74_L	0.816	0.95
240_T	250_G	0.815	0.95
27_Y	292_H	0.810	0.94
14_E	33_R	0.808	0.94
25_F	289_K	0.808	0.94
294_L	297_Y	0.808	0.94
232_Q	236_L	0.804	0.94
15_R	188_D	0.803	0.94
233_I	236_L	0.802	0.94
41_A	47_Q	0.802	0.94
47_Q	59_T	0.801	0.94
100_D	185_Q	0.799	0.94
128_I	175_G	0.791	0.94
276_G	286_P	0.790	0.94
23_A	28_T	0.787	0.93
211_K	215_E	0.787	0.93
91_D	176_K	0.787	0.93
58_F	63_L	0.783	0.93
259_S	303_K	0.782	0.93
128_I	158_V	0.780	0.93
84_K	184_Q	0.776	0.93
65_E	77_D	0.775	0.93
145_E	214_I	0.766	0.93
86_L	189_T	0.762	0.92
114_T	244_C	0.762	0.92
13_K	45_N	0.760	0.92
55_Y	67_H	0.759	0.92
38_W	41_A	0.759	0.92
27_Y	39_A	0.758	0.92
99_N	218_E	0.757	0.92
102_Y	105_I	0.756	0.92
160_P	273_E	0.754	0.92
93_S	198_R	0.748	0.92
83_T	270_S	0.747	0.92
69_H	298_G	0.742	0.91
121_D	125_D	0.742	0.91
84_K	187_S	0.741	0.91
93_S	190_T	0.741	0.91
64_W	67_H	0.739	0.91
21_A	178_I	0.739	0.91
271_V	276_G	0.733	0.91
142_T	145_E	0.732	0.91
130_Y	168_S	0.731	0.91
52_N	57_G	0.729	0.91
64_W	79_F	0.727	0.90
10_P	48_S	0.727	0.90
254_L	306_G	0.727	0.90
127_E	176_K	0.724	0.90
252_W	269_I	0.724	0.90
96_V	193_L	0.721	0.90
108_N	190_T	0.718	0.90
296_P	300_G	0.716	0.90
206_R	209_H	0.713	0.90
240_T	243_E	0.710	0.89
94_V	153_L	0.710	0.89
286_P	291_D	0.708	0.89
21_A	87_D	0.706	0.89
140_L	144_I	0.704	0.89
15_R	33_R	0.697	0.89
22_L	25_F	0.697	0.89
143_M	152_L	0.697	0.89
92_L	115_E	0.696	0.88
6_L	294_L	0.694	0.88
112_G	184_Q	0.693	0.88
166_V	170_T	0.693	0.88
7_F	51_Q	0.689	0.88
138_E	141_T	0.688	0.88
27_Y	34_T	0.684	0.88
17_W	192_R	0.684	0.88
237_L	252_W	0.684	0.88
96_V	170_T	0.682	0.87
278_M	304_L	0.682	0.87
141_T	211_K	0.680	0.87
163_F	242_I	0.679	0.87
89_D	176_K	0.677	0.87
254_L	308_A	0.676	0.87
96_V	191_Y	0.672	0.87
87_D	178_I	0.669	0.86
190_T	206_R	0.669	0.86
129_I	153_L	0.668	0.86
102_Y	212_K	0.668	0.86
239_T	242_I	0.664	0.86
38_W	43_H	0.663	0.86
12_F	34_T	0.662	0.86
97_H	115_E	0.661	0.86
102_Y	107_E	0.659	0.86
273_E	277_R	0.657	0.85
8_F	11_V	0.657	0.85
133_N	137_K	0.652	0.85
155_R	175_G	0.650	0.85
105_I	215_E	0.647	0.85
30_P	34_T	0.644	0.84
113_K	188_D	0.644	0.84
116_C	270_S	0.644	0.84
12_F	37_C	0.643	0.84
163_F	249_V	0.642	0.84
235_D	239_T	0.641	0.84
269_I	295_L	0.640	0.84
68_R	72_G	0.639	0.84
93_S	204_K	0.639	0.84
272_I	309_E	0.639	0.84
96_V	118_Y	0.639	0.84
150_D	155_R	0.636	0.84
143_M	146_R	0.636	0.84
243_E	248_S	0.635	0.83
192_R	198_R	0.634	0.83
24_D	28_T	0.631	0.83
232_Q	235_D	0.628	0.83
61_S	78_R	0.628	0.83
43_H	187_S	0.627	0.83
130_Y	164_F	0.621	0.82
143_M	148_E	0.620	0.82
109_G	187_S	0.619	0.82
92_L	95_Q	0.619	0.82
132_H	149_W	0.616	0.82
39_A	83_T	0.615	0.81
15_R	86_L	0.614	0.81
85_I	270_S	0.611	0.81
23_A	30_P	0.609	0.81
298_G	302_F	0.609	0.81
44_Q	78_R	0.608	0.81
12_F	39_A	0.604	0.80
132_H	220_P	0.601	0.80
95_Q	192_R	0.598	0.80
278_M	284_V	0.597	0.80
64_W	68_R	0.597	0.80
149_W	152_L	0.596	0.79
42_A	61_S	0.594	0.79
236_L	255_S	0.594	0.79
118_Y	170_T	0.594	0.79
278_M	285_Y	0.593	0.79
118_Y	251_K	0.592	0.79
175_G	178_I	0.591	0.79
11_V	48_S	0.591	0.79
6_L	50_V	0.590	0.79
99_N	169_G	0.589	0.79
143_M	151_E	0.589	0.79
184_Q	209_H	0.589	0.79
191_Y	206_R	0.586	0.78
263_Q	267_L	0.585	0.78
92_L	173_A	0.583	0.78
287_F	291_D	0.582	0.78
63_L	67_H	0.581	0.78
142_T	279_I	0.579	0.77
133_N	153_L	0.579	0.77
17_W	206_R	0.578	0.77
111_L	185_Q	0.577	0.77
41_A	48_S	0.577	0.77
82_L	187_S	0.576	0.77
281_G	301_E	0.575	0.77
68_R	71_F	0.573	0.77
233_I	237_L	0.572	0.77
73_Q	264_K	0.572	0.77
103_A	109_G	0.572	0.77
35_G	188_D	0.571	0.76
211_K	214_I	0.571	0.76
23_A	31_S	0.569	0.76
277_R	280_S	0.568	0.76
224_E	228_V	0.568	0.76
258_A	304_L	0.568	0.76
150_D	197_D	0.568	0.76
234_E	237_L	0.567	0.76
158_V	175_G	0.565	0.76
117_W	164_F	0.565	0.76
6_L	60_L	0.561	0.75
38_W	82_L	0.561	0.75
112_G	244_C	0.560	0.75
190_T	198_R	0.560	0.75
233_I	307_Y	0.560	0.75
80_P	187_S	0.558	0.75
103_A	189_T	0.558	0.75
261_K	303_K	0.557	0.75
82_L	188_D	0.557	0.75
206_R	213_S	0.555	0.74
68_R	77_D	0.552	0.74
299_L	302_F	0.552	0.74
116_C	181_L	0.551	0.74
114_T	246_Y	0.550	0.74
298_G	303_K	0.550	0.74
21_A	121_D	0.546	0.73
39_A	120_I	0.546	0.73
174_I	184_Q	0.546	0.73
254_L	276_G	0.546	0.73
45_N	181_L	0.544	0.73
51_Q	291_D	0.542	0.73
39_A	85_I	0.541	0.73
181_L	249_V	0.539	0.72
146_R	151_E	0.539	0.72
204_K	207_E	0.537	0.72
91_D	175_G	0.535	0.72
21_A	28_T	0.534	0.72
14_E	34_T	0.532	0.71
275_E	282_E	0.532	0.71
164_F	175_G	0.531	0.71
239_T	248_S	0.531	0.71
86_L	188_D	0.531	0.71
99_N	168_S	0.531	0.71
88_A	175_G	0.530	0.71
220_P	223_P	0.529	0.71
260_L	303_K	0.529	0.71
93_S	209_H	0.527	0.71
6_L	52_N	0.525	0.70
91_D	271_V	0.522	0.70
96_V	169_G	0.522	0.70
79_F	268_L	0.521	0.70
118_Y	181_L	0.520	0.70
71_F	75_E	0.518	0.69
37_C	85_I	0.518	0.69
7_F	293_M	0.517	0.69
23_A	29_I	0.516	0.69
9_K	28_T	0.516	0.69
106_H	109_G	0.514	0.69
25_F	85_I	0.512	0.68
144_I	151_E	0.511	0.68
99_N	110_E	0.511	0.68
36_E	41_A	0.511	0.68
236_L	256_G	0.510	0.68
129_I	156_V	0.510	0.68
128_I	190_T	0.510	0.68
86_L	92_L	0.508	0.68
204_K	209_H	0.507	0.68
88_A	178_I	0.507	0.68
119_I	179_L	0.507	0.68
222_I	225_R	0.506	0.68
36_E	187_S	0.506	0.68
272_I	289_K	0.505	0.67
261_K	302_F	0.505	0.67
188_D	268_L	0.505	0.67
238_T	241_L	0.501	0.67
12_F	15_R	0.500	0.67
41_A	186_N	0.500	0.67

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1qwrA	1	0.9968	100	0.13	Contact Map
1zx5A	1	0.9143	100	0.208	Contact Map
2wfpA	1	0.9365	100	0.214	Contact Map
1pmiA	1	0.9492	100	0.241	Contact Map
3rnsA	1	0.6349	99.7	0.809	Contact Map
3bu7A	3	0.8032	99.5	0.838	Contact Map
3nw4A	3	0.8825	99	0.87	Contact Map
3myxA	1	0.7143	98.9	0.874	Contact Map
3h7jA	1	0.6667	98.7	0.882	Contact Map
1y3tA	2	0.7556	98.7	0.885	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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