GREMLIN Database
YJCK - Putative ribosomal-protein-alanine acetyltransferase
UniProt: O31633 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 181 (165)
Sequences: 20056 (15340)
Seq/√Len: 1194.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
111_T147_K2.6741.00
132_A145_L2.6171.00
10_R70_F2.5591.00
71_T74_D2.3961.00
10_R16_D2.3661.00
94_A127_L2.1891.00
134_V142_M2.1591.00
3_K72_A2.1591.00
152_K170_Q2.1551.00
153_E173_A2.1301.00
152_K155_I2.1161.00
83_L121_A2.0921.00
6_T112_E2.0601.00
4_G116_L2.0131.00
143_R146_E1.9501.00
134_V145_L1.9371.00
28_R102_K1.9151.00
142_M146_E1.9001.00
119_D123_H1.8991.00
96_I114_V1.8531.00
118_V150_F1.7971.00
68_G77_L1.7901.00
4_G112_E1.7481.00
12_L68_G1.7071.00
155_I170_Q1.6961.00
128_H158_K1.6871.00
18_E45_V1.6781.00
19_E77_L1.6631.00
101_D104_H1.6531.00
118_V130_I1.6411.00
142_M170_Q1.6271.00
114_V148_A1.6201.00
81_V113_A1.6061.00
26_E102_K1.6041.00
17_A49_R1.6031.00
100_L110_M1.5341.00
45_V49_R1.5291.00
8_Y72_A1.5151.00
70_F75_D1.5071.00
44_T47_G1.4991.00
136_P168_D1.4911.00
51_R55_Y1.4801.00
142_M152_K1.4791.00
116_L119_D1.4601.00
69_I100_L1.4171.00
139_L142_M1.4051.00
146_E152_K1.3581.00
14_V53_T1.3531.00
120_Y124_E1.3441.00
128_H166_W1.3391.00
81_V117_V1.3101.00
129_R173_A1.2901.00
3_K8_Y1.2851.00
111_T144_V1.2811.00
8_Y70_F1.2801.00
161_K166_W1.2751.00
21_L45_V1.2411.00
136_P155_I1.2371.00
78_I104_H1.2371.00
159_N169_H1.2271.00
142_M172_L1.2241.00
69_I113_A1.2111.00
19_E76_R1.2081.00
137_R167_E1.2051.00
156_A171_V1.2031.00
98_Y145_L1.1881.00
17_A52_I1.1571.00
110_M144_V1.1501.00
76_R103_A1.1461.00
121_A130_I1.1441.00
76_R104_H1.1241.00
71_T78_I1.1131.00
17_A45_V1.0971.00
49_R53_T1.0941.00
80_T99_F1.0811.00
67_F117_V1.0721.00
105_N140_G1.0641.00
102_K105_N1.0581.00
121_A125_L1.0581.00
134_V172_L1.0571.00
129_R153_E1.0531.00
111_T115_R1.0451.00
98_Y141_S1.0431.00
23_L99_F1.0341.00
87_I91_L1.0321.00
152_K172_L1.0241.00
14_V49_R1.0211.00
95_F133_G1.0141.00
23_L101_D1.0111.00
158_K168_D1.0071.00
157_R173_A1.0071.00
43_Y47_G1.0031.00
19_E22_G0.9981.00
155_I168_D0.9951.00
4_G7_I0.9931.00
93_T131_E0.9921.00
120_Y125_L0.9921.00
67_F120_Y0.9661.00
132_A150_F0.9411.00
118_V148_A0.9371.00
136_P170_Q0.9361.00
118_V174_I0.9321.00
157_R168_D0.9301.00
144_V148_A0.9301.00
21_L25_S0.9291.00
139_L143_R0.9271.00
26_E101_D0.9191.00
22_G101_D0.9151.00
70_F77_L0.9081.00
71_T109_I0.9061.00
26_E103_A0.8961.00
71_T76_R0.8931.00
83_L117_V0.8931.00
135_M167_E0.8881.00
12_L80_T0.8861.00
115_R119_D0.8861.00
14_V56_Q0.8851.00
121_A127_L0.8851.00
106_G140_G0.8851.00
111_T148_A0.8851.00
50_K54_E0.8841.00
93_T129_R0.8771.00
8_Y75_D0.8761.00
145_L150_F0.8751.00
150_F174_I0.8611.00
32_E35_S0.8571.00
16_D70_F0.8571.00
100_L109_I0.8521.00
115_R148_A0.8511.00
161_K165_V0.8471.00
17_A21_L0.8461.00
58_R63_E0.8451.00
7_I109_I0.8401.00
76_R101_D0.8391.00
71_T107_K0.8371.00
42_Y48_Q0.8261.00
19_E101_D0.8121.00
21_L48_Q0.8091.00
7_I113_A0.8091.00
156_A159_N0.8041.00
112_E116_L0.8041.00
14_V17_A0.8041.00
58_R64_E0.7981.00
71_T104_H0.7971.00
92_Q166_W0.7961.00
24_Q99_F0.7851.00
104_H107_K0.7761.00
93_T159_N0.7711.00
153_E157_R0.7631.00
98_Y110_M0.7551.00
161_K164_G0.7531.00
4_G9_V0.7481.00
10_R68_G0.7441.00
141_S145_L0.7421.00
95_F131_E0.7421.00
18_E22_G0.7411.00
50_K53_T0.7401.00
22_G26_E0.7321.00
69_I81_V0.7291.00
22_G76_R0.7251.00
158_K166_W0.7231.00
46_E49_R0.7231.00
133_G169_H0.7211.00
139_L146_E0.7191.00
34_F137_R0.7131.00
66_H82_S0.7101.00
106_G111_T0.7091.00
28_R33_Q0.7071.00
6_T108_G0.6901.00
83_L94_A0.6901.00
133_G156_A0.6831.00
55_Y66_H0.6821.00
22_G103_A0.6821.00
31_F35_S0.6761.00
106_G143_R0.6621.00
32_E37_I0.6511.00
98_Y114_V0.6501.00
47_G50_K0.6491.00
23_L77_L0.6441.00
100_L105_N0.6421.00
69_I79_G0.6391.00
11_P59_L0.6391.00
69_I109_I0.6351.00
46_E50_K0.6321.00
34_F135_M0.6321.00
134_V141_S0.6311.00
134_V170_Q0.6281.00
137_R165_V0.6231.00
114_V144_V0.6231.00
84_F95_F0.6191.00
143_R147_K0.6181.00
31_F105_N0.6181.00
111_T140_G0.6161.00
140_G143_R0.6151.00
146_E172_L0.6141.00
31_F34_F0.6131.00
160_V169_H0.6071.00
13_E16_D0.6071.00
43_Y48_Q0.6051.00
98_Y144_V0.6051.00
78_I109_I0.6011.00
94_A121_A0.5961.00
48_Q52_I0.5931.00
162_I165_V0.5921.00
26_E105_N0.5871.00
11_P56_Q0.5861.00
132_A141_S0.5831.00
77_L80_T0.5821.00
5_K112_E0.5791.00
10_R13_E0.5741.00
136_P142_M0.5741.00
162_I167_E0.5671.00
31_F99_F0.5651.00
86_I94_A0.5651.00
92_Q161_K0.5641.00
148_A174_I0.5641.00
133_G171_V0.5581.00
122_F174_I0.5571.00
118_V122_F0.5561.00
131_E156_A0.5511.00
81_V114_V0.5491.00
48_Q51_R0.5481.00
100_L104_H0.5461.00
131_E159_N0.5431.00
85_Q94_A0.5421.00
109_I112_E0.5421.00
35_S99_F0.5421.00
92_Q128_H0.5411.00
28_R105_N0.5401.00
96_I130_I0.5371.00
156_A173_A0.5361.00
9_V116_L0.5311.00
151_H157_R0.5311.00
7_I112_E0.5261.00
82_S97_G0.5251.00
135_M162_I0.5211.00
24_Q80_T0.5181.00
106_G144_V0.5161.00
56_Q59_L0.5151.00
45_V48_Q0.5121.00
69_I110_M0.5111.00
19_E70_F0.5091.00
114_V118_V0.5071.00
56_Q60_E0.5061.00
110_M114_V0.5051.00
129_R159_N0.5041.00
18_E21_L0.5041.00
73_S109_I0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3pzjA 2 0.9558 100 0.277 Contact Map
2vzyA 3 0.8729 100 0.285 Contact Map
1nslA 3 0.9669 100 0.295 Contact Map
1yreA 2 0.9337 100 0.299 Contact Map
3igrA 2 1 100 0.299 Contact Map
3r9fA 1 0.9503 100 0.301 Contact Map
2fckA 2 0.9282 100 0.304 Contact Map
2z10A 2 0.9448 100 0.318 Contact Map
3tcvA 2 0.9558 100 0.329 Contact Map
3fbuA 2 0.9171 100 0.33 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0081 seconds.