YJCH - BACSU - GREMLIN Contacts

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YJCH - Uncharacterized protein YjcH

UniProt:	O31630	Sequences: MAPKNGTVQEKKFFSKELNEEMTLLVYLPSNYSPLYKYHVIIAQDGHDYFRLGRIGRQVEELLSKREIDRSIIIGVPYKDVKERRNTYHPEGSKFSAYKRFIAHELVPFADDEYPTYQIGYGRTLIGDSLGATVSLMTALDYPNMFGNIIMQSPYVDKHVLEAVKQSDDIKHLSIYHQIGTKETDVHTTDGNILDFTEPNRELKQLLEKKLSDYDFEPFDGDHKWTYWQPLITPALKKML	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	240 (211)
Sequences:	8766 (6538)
Seq/√Len:	450.1

ECOLI - FES SFGH1 SFGH2 YIEL
BACSU - YJCH BESA YBBA
SULSO - Q97UM5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
139_A	149_I	3.736	1.00
111_D	123_R	3.303	1.00
14_F	21_E	3.155	1.00
204_K	208_E	2.805	1.00
151_M	154_P	2.752	1.00
117_Y	122_G	2.688	1.00
109_F	113_E	2.631	1.00
100_R	104_H	2.572	1.00
90_P	100_R	2.548	1.00
206_L	210_K	2.376	1.00
111_D	116_T	2.371	1.00
217_E	234_P	2.303	1.00
41_I	71_S	2.275	1.00
152_Q	235_A	2.233	1.00
99_K	142_Y	2.233	1.00
12_K	21_E	2.159	1.00
31_N	70_R	2.145	1.00
72_I	116_T	2.144	1.00
204_K	214_Y	2.111	1.00
201_R	218_P	1.997	1.00
99_K	138_T	1.991	1.00
150_I	235_A	1.988	1.00
38_Y	72_I	1.953	1.00
42_I	123_R	1.922	1.00
107_V	123_R	1.916	1.00
41_I	126_I	1.912	1.00
40_V	74_I	1.908	1.00
32_Y	115_P	1.895	1.00
124_T	148_N	1.846	1.00
43_A	126_I	1.804	1.00
74_I	110_A	1.799	1.00
14_F	19_N	1.787	1.00
26_V	74_I	1.779	1.00
178_Q	231_L	1.749	1.00
13_F	101_F	1.672	1.00
197_T	201_R	1.614	1.00
54_R	57_R	1.592	1.00
32_Y	38_Y	1.591	1.00
99_K	141_D	1.587	1.00
181_T	220_D	1.585	1.00
103_A	142_Y	1.576	1.00
10_E	23_T	1.569	1.00
42_I	107_V	1.530	1.00
28_L	72_I	1.516	1.00
110_A	116_T	1.508	1.00
12_K	23_T	1.495	1.00
11_K	24_L	1.461	1.00
101_F	106_L	1.446	1.00
42_I	111_D	1.429	1.00
36_Y	70_R	1.429	1.00
204_K	216_F	1.427	1.00
61_E	65_K	1.386	1.00
205_Q	208_E	1.356	1.00
205_Q	209_K	1.353	1.00
201_R	205_Q	1.338	1.00
84_R	87_T	1.337	1.00
24_L	106_L	1.328	1.00
204_K	218_P	1.319	1.00
62_L	233_T	1.307	1.00
107_V	145_M	1.305	1.00
233_T	237_K	1.303	1.00
41_I	73_I	1.287	1.00
202_E	205_Q	1.282	1.00
168_D	172_H	1.280	1.00
136_L	156_V	1.272	1.00
137_M	141_D	1.269	1.00
125_L	135_S	1.265	1.00
59_V	73_I	1.252	1.00
104_H	108_P	1.241	1.00
50_F	75_G	1.230	1.00
27_Y	60_E	1.229	1.00
44_Q	134_V	1.227	1.00
154_P	200_N	1.223	1.00
126_I	150_I	1.222	1.00
104_H	142_Y	1.222	1.00
128_D	228_W	1.217	1.00
44_Q	98_Y	1.209	1.00
148_N	174_S	1.205	1.00
69_D	236_L	1.174	1.00
168_D	171_K	1.166	1.00
10_E	25_L	1.162	1.00
17_E	105_E	1.162	1.00
180_G	183_E	1.158	1.00
103_A	145_M	1.156	1.00
123_R	145_M	1.120	1.00
38_Y	115_P	1.119	1.00
17_E	104_H	1.116	1.00
207_L	214_Y	1.116	1.00
135_S	149_I	1.116	1.00
206_L	209_K	1.115	1.00
153_S	228_W	1.114	1.00
17_E	100_R	1.111	1.00
40_V	116_T	1.104	1.00
24_L	109_F	1.102	1.00
37_K	115_P	1.075	1.00
99_K	103_A	1.073	1.00
136_L	151_M	1.057	1.00
142_Y	145_M	1.056	1.00
42_I	74_I	1.048	1.00
208_E	214_Y	1.042	1.00
15_S	105_E	1.042	1.00
49_Y	53_G	1.041	1.00
54_R	58_Q	1.035	1.00
107_V	111_D	1.034	1.00
103_A	138_T	1.033	1.00
126_I	152_Q	1.029	1.00
101_F	105_E	1.018	1.00
72_I	114_Y	1.011	1.00
109_F	112_D	1.005	1.00
132_A	151_M	1.000	1.00
42_I	110_A	0.991	1.00
122_G	147_G	0.991	1.00
198_E	202_E	0.989	1.00
63_L	70_R	0.988	1.00
53_G	225_W	0.988	1.00
43_A	75_G	0.986	1.00
102_I	138_T	0.980	1.00
55_I	58_Q	0.977	1.00
149_I	175_I	0.977	1.00
176_Y	217_E	0.976	1.00
37_K	117_Y	0.961	1.00
69_D	237_K	0.960	1.00
31_N	38_Y	0.957	1.00
111_D	118_Q	0.954	1.00
24_L	101_F	0.943	1.00
179_I	183_E	0.942	1.00
203_L	207_L	0.941	1.00
135_S	151_M	0.939	1.00
133_T	137_M	0.934	1.00
181_T	218_P	0.934	1.00
162_E	165_K	0.933	1.00
129_S	223_H	0.928	1.00
22_M	101_F	0.922	1.00
11_K	109_F	0.914	1.00
125_L	138_T	0.912	1.00
219_F	231_L	0.903	1.00
170_I	173_L	0.897	1.00
159_H	162_E	0.894	1.00
177_H	204_K	0.891	1.00
44_Q	125_L	0.891	1.00
185_D	196_F	0.889	1.00
11_K	113_E	0.887	1.00
156_V	203_L	0.885	1.00
16_K	105_E	0.885	1.00
39_H	71_S	0.874	1.00
231_L	234_P	0.872	1.00
152_Q	228_W	0.871	1.00
163_A	166_Q	0.864	1.00
62_L	237_K	0.863	1.00
18_L	22_M	0.858	1.00
28_L	32_Y	0.852	1.00
90_P	95_F	0.851	1.00
103_A	146_F	0.847	1.00
15_S	18_L	0.846	1.00
157_D	160_V	0.844	1.00
219_F	227_Y	0.834	1.00
160_V	163_A	0.828	1.00
38_Y	70_R	0.823	1.00
84_R	90_P	0.818	1.00
107_V	146_F	0.813	1.00
76_V	102_I	0.812	1.00
162_E	166_Q	0.806	1.00
103_A	108_P	0.805	1.00
42_I	146_F	0.802	1.00
88_Y	134_V	0.799	1.00
158_K	163_A	0.799	1.00
23_T	77_P	0.796	1.00
97_A	100_R	0.794	1.00
117_Y	121_Y	0.793	1.00
63_L	69_D	0.789	1.00
174_S	213_D	0.787	1.00
48_D	225_W	0.777	1.00
207_L	212_S	0.773	1.00
25_L	77_P	0.765	1.00
34_P	115_P	0.763	1.00
107_V	110_A	0.761	1.00
232_I	236_L	0.760	1.00
83_E	86_N	0.760	1.00
60_E	64_S	0.756	1.00
227_Y	231_L	0.754	1.00
82_K	86_N	0.754	1.00
26_V	114_Y	0.751	1.00
177_H	200_N	0.749	1.00
43_A	232_I	0.749	1.00
40_V	123_R	0.748	1.00
61_E	64_S	0.748	1.00
108_P	112_D	0.747	1.00
160_V	165_K	0.744	1.00
161_L	165_K	0.742	1.00
125_L	149_I	0.740	1.00
84_R	88_Y	0.740	1.00
28_L	38_Y	0.739	1.00
201_R	204_K	0.739	1.00
99_K	137_M	0.738	1.00
234_P	237_K	0.737	1.00
59_V	63_L	0.734	1.00
44_Q	76_V	0.726	1.00
136_L	154_P	0.721	1.00
30_S	64_S	0.719	1.00
61_E	233_T	0.712	1.00
200_N	216_F	0.711	1.00
10_E	51_R	0.708	1.00
33_S	115_P	0.708	1.00
219_F	234_P	0.707	1.00
39_H	70_R	0.704	1.00
198_E	201_R	0.702	1.00
40_V	72_I	0.698	1.00
123_R	147_G	0.697	1.00
85_R	130_L	0.697	1.00
124_T	150_I	0.693	1.00
40_V	73_I	0.693	1.00
56_G	60_E	0.691	1.00
152_Q	178_Q	0.683	1.00
74_I	106_L	0.679	1.00
40_V	111_D	0.676	1.00
111_D	145_M	0.676	1.00
151_M	177_H	0.668	1.00
48_D	52_L	0.667	1.00
57_R	61_E	0.666	1.00
230_P	233_T	0.663	1.00
33_S	37_K	0.660	1.00
44_Q	135_S	0.656	1.00
108_P	145_M	0.655	1.00
11_K	114_Y	0.654	1.00
27_Y	63_L	0.654	1.00
158_K	161_L	0.652	1.00
103_A	107_V	0.644	0.99
95_F	134_V	0.644	0.99
90_P	97_A	0.633	0.99
126_I	232_I	0.632	0.99
136_L	175_I	0.630	0.99
84_R	89_H	0.628	0.99
169_D	173_L	0.628	0.99
53_G	57_R	0.628	0.99
196_F	200_N	0.627	0.99
104_H	145_M	0.626	0.99
62_L	69_D	0.626	0.99
13_F	24_L	0.622	0.99
131_G	134_V	0.621	0.99
39_H	122_G	0.619	0.99
171_K	174_S	0.619	0.99
163_A	167_S	0.619	0.99
153_S	183_E	0.614	0.99
128_D	225_W	0.610	0.99
62_L	236_L	0.609	0.99
158_K	166_Q	0.604	0.99
54_R	75_G	0.604	0.99
83_E	87_T	0.598	0.99
43_A	49_Y	0.595	0.99
171_K	176_Y	0.591	0.99
62_L	65_K	0.586	0.99
117_Y	123_R	0.582	0.99
159_H	163_A	0.582	0.99
179_I	182_K	0.580	0.99
33_S	36_Y	0.579	0.99
181_T	185_D	0.579	0.99
65_K	69_D	0.578	0.99
87_T	90_P	0.577	0.99
178_Q	182_K	0.573	0.99
32_Y	72_I	0.572	0.99
202_E	206_L	0.571	0.99
161_L	166_Q	0.570	0.99
138_T	146_F	0.565	0.99
219_F	230_P	0.565	0.99
111_D	117_Y	0.564	0.99
132_A	154_P	0.563	0.99
16_K	19_N	0.562	0.99
224_K	227_Y	0.561	0.99
57_R	60_E	0.561	0.99
124_T	147_G	0.560	0.99
178_Q	227_Y	0.557	0.99
108_P	146_F	0.556	0.99
58_Q	61_E	0.554	0.98
177_H	214_Y	0.554	0.98
47_H	50_F	0.549	0.98
58_Q	229_Q	0.547	0.98
152_Q	231_L	0.547	0.98
173_L	178_Q	0.544	0.98
179_I	196_F	0.543	0.98
86_N	90_P	0.543	0.98
17_E	97_A	0.543	0.98
139_A	173_L	0.542	0.98
52_L	56_G	0.538	0.98
27_Y	73_I	0.538	0.98
182_K	221_G	0.534	0.98
169_D	172_H	0.532	0.98
133_T	155_Y	0.530	0.98
203_L	206_L	0.529	0.98
171_K	177_H	0.528	0.98
160_V	164_V	0.528	0.98
35_L	115_P	0.526	0.98
85_R	89_H	0.523	0.98
71_S	236_L	0.522	0.98
13_F	109_F	0.518	0.98
55_I	232_I	0.514	0.98
164_V	167_S	0.513	0.98
26_V	72_I	0.513	0.98
130_L	134_V	0.513	0.98
96_S	141_D	0.509	0.97
28_L	31_N	0.509	0.97
159_H	165_K	0.509	0.97
46_G	129_S	0.508	0.97
110_A	114_Y	0.507	0.97
197_T	200_N	0.507	0.97
27_Y	59_V	0.507	0.97
13_F	22_M	0.506	0.97
178_Q	219_F	0.506	0.97
39_H	117_Y	0.506	0.97
28_L	114_Y	0.505	0.97
175_I	178_Q	0.505	0.97
157_D	202_E	0.505	0.97
230_P	234_P	0.504	0.97
136_L	203_L	0.501	0.97
89_H	137_M	0.500	0.97
96_S	137_M	0.500	0.97
60_E	63_L	0.500	0.97

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4w9rA	2	0.925	100	0.357	Contact Map
3c8dA	2	0.9208	100	0.399	Contact Map
1jjfA	1	0.9292	100	0.418	Contact Map
3gffA	2	0.9292	100	0.422	Contact Map
3ls2A	2	0.9417	100	0.444	Contact Map
2gzsA	1	0.9167	100	0.454	Contact Map
2uz0A	4	0.8708	100	0.467	Contact Map
4rotA	4	0.9125	100	0.469	Contact Map
2qm0A	3	0.95	100	0.471	Contact Map
3i6yA	1	0.9417	100	0.479	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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