GREMLIN Database
YJCG - UPF0477 protein YjcG
UniProt: O31629 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 171 (163)
Sequences: 750 (554)
Seq/√Len: 43.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
35_L67_L7.4241.00
7_L145_V4.0561.00
62_S98_K3.6151.00
43_C51_L3.0941.00
7_L65_L2.8611.00
59_A148_F2.8581.00
68_K142_E2.3601.00
10_S143_E2.2781.00
13_L141_H2.2601.00
53_S57_N2.0950.99
54_H102_G2.0430.99
72_Y134_L2.0090.99
68_K140_S1.9880.99
73_S85_K1.9730.99
16_L139_V1.9110.99
80_N124_D1.9030.99
32_P40_S1.8720.99
11_K15_D1.8050.98
52_V163_E1.7740.98
53_S56_R1.6630.97
51_L104_L1.6530.97
66_V142_E1.6400.97
89_T93_K1.5820.96
66_V144_I1.5380.95
153_Q159_W1.5350.95
40_S159_W1.5140.95
16_L141_H1.5130.95
57_N60_K1.5120.95
90_E93_K1.5090.95
56_R163_E1.4990.95
26_P121_N1.4910.95
82_I122_L1.4730.94
84_I118_V1.4320.93
73_S83_Y1.4260.93
24_Y133_Q1.4090.93
6_V151_L1.4030.93
69_M84_I1.3940.92
147_R164_T1.3760.92
156_N160_T1.3700.92
7_L148_F1.3670.92
65_L145_V1.3670.92
79_N110_Y1.3570.91
41_F159_W1.3570.91
3_Y81_V1.3400.91
21_R25_D1.3330.91
28_Y120_Q1.3260.90
80_N110_Y1.3080.90
96_N100_Y1.3050.90
4_G21_R1.2800.89
147_R167_L1.2790.89
72_Y84_I1.2790.89
150_L165_F1.2700.88
61_E101_T1.2630.88
61_E98_K1.2590.88
75_F81_V1.2490.87
145_V167_L1.2450.87
61_E167_L1.2410.87
39_A111_N1.2290.87
54_H103_V1.2170.86
55_L148_F1.2120.86
148_F167_L1.2100.86
44_A47_K1.2030.85
69_M143_E1.2020.85
4_G120_Q1.1810.84
6_V153_Q1.1690.84
63_H168_G1.1580.83
32_P159_W1.1470.83
17_A151_L1.1250.81
93_K131_L1.1180.81
71_K130_V1.1140.81
89_T131_L1.1140.81
61_E168_G1.1100.80
24_Y118_V1.0830.79
12_K19_S1.0780.78
68_K87_E1.0650.78
17_A84_I1.0650.78
56_R98_K1.0640.78
22_K26_P1.0560.77
9_P28_Y1.0520.77
4_G81_V1.0240.75
94_T98_K1.0220.75
8_F151_L1.0100.74
69_M119_G0.9960.73
98_K167_L0.9940.73
93_K97_E0.9920.72
106_G109_E0.9770.71
14_Q18_N0.9760.71
39_A159_W0.9560.70
47_K97_E0.9360.68
39_A83_Y0.9330.68
36_T115_H0.9320.68
121_N159_W0.9180.66
14_Q17_A0.9040.65
6_V121_N0.9000.65
9_P151_L0.8830.63
21_R38_R0.8830.63
32_P158_S0.8810.63
125_D128_S0.8790.63
90_E107_E0.8770.63
71_K120_Q0.8770.63
92_L112_F0.8730.62
32_P156_N0.8640.62
4_G31_I0.8550.61
61_E132_G0.8520.61
121_N153_Q0.8480.60
90_E167_L0.8400.59
86_A119_G0.8380.59
118_V139_V0.8380.59
70_T140_S0.8380.59
21_R31_I0.8280.58
32_P79_N0.8240.58
25_D31_I0.8230.58
119_G130_V0.8200.58
4_G25_D0.8180.57
38_R100_Y0.8150.57
42_E165_F0.8150.57
103_V107_E0.8140.57
63_H90_E0.8130.57
38_R41_F0.8120.57
7_L168_G0.8070.56
35_L49_D0.8060.56
22_K29_S0.7960.55
83_Y144_I0.7950.55
5_I150_L0.7940.55
106_G167_L0.7930.55
58_I104_L0.7870.54
154_L160_T0.7810.54
18_N31_I0.7780.54
3_Y31_I0.7750.53
75_F159_W0.7730.53
163_E166_L0.7720.53
76_A119_G0.7700.53
46_E60_K0.7690.53
16_L20_Y0.7640.52
7_L99_L0.7600.52
143_E153_Q0.7560.52
33_P99_L0.7540.51
83_Y159_W0.7530.51
47_K50_Q0.7500.51
68_K93_K0.7480.51
55_L59_A0.7380.50
59_A62_S0.7330.49
3_Y43_C0.7270.49
40_S43_C0.7240.48
52_V150_L0.7230.48
17_A92_L0.7220.48
74_S131_L0.7200.48
13_L16_L0.7180.48
4_G80_N0.7140.48
162_Y166_L0.7110.47
23_R33_P0.7110.47
16_L98_K0.7070.47
47_K106_G0.7000.46
14_Q28_Y0.6950.46
55_L99_L0.6930.46
34_H115_H0.6920.45
152_Y162_Y0.6840.45
16_L67_L0.6830.45
67_L130_V0.6820.44
63_H97_E0.6800.44
29_S138_E0.6790.44
40_S79_N0.6760.44
76_A80_N0.6740.44
29_S83_Y0.6690.43
18_N21_R0.6690.43
37_L101_T0.6660.43
98_K142_E0.6660.43
54_H120_Q0.6660.43
17_A116_V0.6660.43
15_D164_T0.6600.42
126_E129_D0.6520.42
72_Y118_V0.6510.42
65_L114_P0.6500.41
134_L152_Y0.6490.41
111_N168_G0.6410.41
4_G36_T0.6410.41
64_P161_V0.6410.41
37_L112_F0.6410.41
32_P39_A0.6380.40
31_I159_W0.6370.40
127_H149_H0.6290.40
56_R97_E0.6290.40
30_L33_P0.6250.39
13_L127_H0.6230.39
4_G110_Y0.6230.39
9_P122_L0.6200.39
69_M116_V0.6180.39
87_E167_L0.6150.38
53_S105_A0.6150.38
38_R69_M0.6100.38
9_P41_F0.6090.38
5_I50_Q0.6090.38
21_R33_P0.6080.38
36_T75_F0.6070.38
38_R99_L0.6030.37
39_A69_M0.6030.37
39_A79_N0.6010.37
17_A152_Y0.5990.37
16_L19_S0.5980.37
53_S98_K0.5960.37
57_N94_T0.5930.36
48_A165_F0.5880.36
24_Y161_V0.5860.36
155_E166_L0.5860.36
26_P85_K0.5820.35
34_H117_T0.5800.35
37_L65_L0.5800.35
32_P157_G0.5750.35
68_K141_H0.5740.35
96_N127_H0.5730.35
21_R26_P0.5700.34
13_L118_V0.5670.34
68_K89_T0.5650.34
9_P14_Q0.5650.34
54_H104_L0.5640.34
49_D57_N0.5620.34
6_V48_A0.5600.33
17_A37_L0.5560.33
58_I99_L0.5550.33
84_I167_L0.5540.33
76_A128_S0.5540.33
13_L88_P0.5520.33
4_G41_F0.5500.33
3_Y121_N0.5480.32
6_V149_H0.5450.32
20_Y167_L0.5420.32
37_L148_F0.5360.31
16_L105_A0.5360.31
36_T71_K0.5350.31
65_L69_M0.5330.31
154_L158_S0.5310.31
28_Y159_W0.5310.31
62_S167_L0.5300.31
24_Y31_I0.5280.31
49_D60_K0.5260.31
13_L160_T0.5250.31
70_T144_I0.5160.30
67_L145_V0.5130.30
6_V75_F0.5120.30
66_V90_E0.5100.29
79_N103_V0.5070.29
44_A111_N0.5030.29
53_S168_G0.5010.29
122_L159_W0.5000.29
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2d4gA 2 0.9825 100 0.303 Contact Map
1vgjA 1 0.9766 100 0.378 Contact Map
1iuhA 1 0.9591 100 0.393 Contact Map
1jh6A 5 0.9649 100 0.399 Contact Map
4qakA 1 0.9357 100 0.419 Contact Map
3j4qA 1 0.9825 100 0.422 Contact Map
2vfkA 1 0.9825 100 0.435 Contact Map
4h7wA 1 0.9474 99.9 0.482 Contact Map
2fsqA 1 0.9357 95.9 0.868 Contact Map
4rptA 2 0.807 89 0.897 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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