GREMLIN Database
YJBQ - Putative Na(+)/H(+) antiporter YjbQ
UniProt: O31615 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 614 (506)
Sequences: 3403 (2313)
Seq/√Len: 102.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
470_L487_A6.6961.00
391_L394_R5.5721.00
389_K393_K4.6411.00
199_L211_R3.5781.00
472_V484_A3.5351.00
406_F417_T3.4331.00
327_M342_G3.4151.00
198_I211_R3.3621.00
403_T468_D3.3581.00
391_L395_E3.2861.00
203_G211_R3.2511.00
155_I160_I3.0371.00
198_I202_A2.9251.00
112_F115_S2.8951.00
204_V211_R2.7351.00
315_L379_I2.7231.00
484_A513_I2.7051.00
401_K466_E2.6711.00
112_F116_L2.6571.00
195_L199_L2.6361.00
390_K394_R2.6261.00
194_W198_I2.5641.00
327_M335_N2.5291.00
210_G213_F2.5031.00
488_K495_V2.4201.00
200_F204_V2.4041.00
488_K514_S2.3041.00
209_F213_F2.2481.00
485_L511_Q2.2271.00
312_P316_L2.2251.00
200_F211_R2.2151.00
14_I236_T2.2131.00
109_V325_P2.2021.00
314_L376_V2.2011.00
472_V480_N2.1921.00
199_L212_V2.1491.00
199_L213_F2.1161.00
366_S369_M2.1151.00
389_K392_Y2.0961.00
472_V483_I2.0431.00
460_E465_F2.0401.00
317_A321_S2.0381.00
17_F236_T1.9871.00
464_I470_L1.9801.00
402_K468_D1.9691.00
203_G212_V1.9671.00
107_I136_L1.9601.00
464_I491_G1.9551.00
356_A373_L1.9541.00
271_E275_Q1.9501.00
405_T464_I1.9341.00
347_S384_T1.9271.00
469_I530_I1.9151.00
405_T467_T1.9111.00
198_I213_F1.9031.00
494_R514_S1.9011.00
327_M331_K1.8991.00
113_I117_L1.8531.00
216_R267_S1.8421.00
209_F212_V1.8371.00
471_V526_L1.8161.00
372_A376_V1.8061.00
206_L209_F1.8041.00
360_Q370_S1.7961.00
136_L178_L1.7941.00
203_G207_Y1.7891.00
407_I470_L1.7751.00
343_F387_C1.7661.00
115_S118_L1.7641.00
56_T59_Q1.7641.00
318_L376_V1.7601.00
137_I356_A1.7591.00
301_L375_L1.7571.00
115_S119_S1.7481.00
352_V377_A1.7411.00
517_S520_L1.7271.00
390_K393_K1.7151.00
521_S525_L1.7001.00
19_T42_I1.6991.00
392_Y395_E1.6901.00
203_G213_F1.6791.00
474_T483_I1.6681.00
194_W197_M1.6561.00
348_T352_V1.6471.00
476_N479_M1.6361.00
164_I344_L1.6361.00
507_A510_E1.6311.00
111_I115_S1.6281.00
127_F130_N1.6031.00
15_V43_I1.6011.00
471_V530_I1.6011.00
196_L211_R1.6001.00
59_Q291_M1.5871.00
198_I210_G1.5861.00
412_M526_L1.5831.00
348_T377_A1.5811.00
330_K338_I1.5761.00
145_V381_S1.5761.00
163_I333_Y1.5711.00
134_M373_L1.5701.00
198_I212_V1.5601.00
208_F212_V1.5571.00
167_V341_S1.5551.00
217_S221_S1.5371.00
133_L359_G1.5341.00
309_I313_L1.5241.00
331_K335_N1.5231.00
302_F308_L1.5211.00
297_D371_G1.5071.00
358_I362_L1.5041.00
433_Y436_N1.4931.00
358_I361_Q1.4841.00
431_H437_A1.4821.00
318_L348_T1.4791.00
319_L383_F1.4731.00
99_N102_A1.4711.00
389_K394_R1.4671.00
406_F416_V1.4591.00
224_K435_E1.4541.00
499_V505_E1.4481.00
104_A108_F1.4451.00
201_A212_V1.4351.00
43_I50_L1.4321.00
199_L210_G1.4271.00
115_S131_A1.4231.00
204_V212_V1.4221.00
315_L380_A1.4201.00
437_A448_V1.4191.00
484_A495_V1.4171.00
70_M140_T1.4151.00
400_E403_T1.3991.00
203_G210_G1.3891.00
310_M372_A1.3881.00
199_L203_G1.3871.00
199_L204_V1.3851.00
106_V110_G1.3791.00
182_F362_L1.3791.00
441_L446_F1.3771.00
113_I116_L1.3660.99
202_A206_L1.3630.99
192_N196_L1.3590.99
202_A211_R1.3580.99
460_E490_K1.3560.99
193_M197_M1.3520.99
111_I135_T1.3520.99
431_H436_N1.3470.99
275_Q455_E1.3410.99
263_V272_L1.3310.99
219_V237_L1.3290.99
217_S220_Q1.3260.99
321_S325_P1.3260.99
195_L198_I1.3210.99
208_F211_R1.3200.99
501_S504_H1.3000.99
407_I453_D1.2960.99
296_L378_V1.2860.99
160_I340_A1.2860.99
53_E57_W1.2850.99
108_F112_F1.2820.99
316_L320_V1.2800.99
243_A247_S1.2710.99
483_I487_A1.2710.99
112_F135_T1.2660.99
441_L444_S1.2640.99
267_S442_S1.2620.99
453_D483_I1.2610.99
407_I483_I1.2580.99
135_T139_S1.2580.99
107_I178_L1.2540.99
330_K333_Y1.2500.99
517_S523_K1.2380.99
201_A211_R1.2350.99
207_Y211_R1.2340.99
456_H490_K1.2320.99
146_V345_L1.2310.99
464_I490_K1.2210.99
31_P148_P1.2050.99
363_H366_S1.2000.99
528_A532_A1.1970.99
200_F212_V1.1970.99
487_A491_G1.1970.99
41_L47_G1.1940.99
481_A511_Q1.1940.99
481_A507_A1.1920.99
38_I42_I1.1900.99
92_P329_L1.1890.99
311_I372_A1.1860.99
160_I337_T1.1840.99
150_L161_G1.1810.99
193_M211_R1.1760.98
485_L489_D1.1660.98
519_L523_K1.1640.98
106_V326_V1.1590.98
477_E480_N1.1540.98
392_Y397_Q1.1540.98
463_G466_E1.1520.98
410_N413_T1.1520.98
191_G194_W1.1500.98
409_A417_T1.1490.98
506_A510_E1.1490.98
100_T104_A1.1470.98
197_M201_A1.1370.98
405_T470_L1.1350.98
517_S521_S1.1320.98
141_I171_A1.1280.98
406_F471_V1.1270.98
202_A212_V1.1260.98
315_L319_L1.1260.98
525_L529_L1.1230.98
178_L355_A1.1210.98
168_A351_L1.1190.98
86_K92_P1.1160.98
196_L199_L1.1080.98
436_N439_E1.1020.98
518_I523_K1.0980.98
7_A10_V1.0940.98
357_T361_Q1.0940.98
75_L261_V1.0910.97
403_T426_D1.0910.97
38_I56_T1.0870.97
322_K325_P1.0860.97
103_A174_A1.0790.97
311_I322_K1.0740.97
88_K166_L1.0740.97
207_Y213_F1.0730.97
196_L200_F1.0730.97
175_T355_A1.0690.97
140_T178_L1.0670.97
310_M314_L1.0660.97
481_A504_H1.0650.97
242_V252_N1.0650.97
524_T531_E1.0640.97
115_S128_I1.0530.97
529_L532_A1.0520.97
200_F203_G1.0510.97
34_V382_I1.0480.97
104_A107_I1.0470.97
310_M313_L1.0470.97
105_S109_V1.0440.97
80_S84_K1.0440.97
102_A106_V1.0410.97
146_V344_L1.0350.97
12_V20_P1.0350.97
99_N103_A1.0250.96
103_A170_I1.0230.96
308_L311_I1.0180.96
141_I345_L1.0110.96
191_G196_L1.0090.96
133_L137_I1.0080.96
42_I47_G1.0070.96
44_G51_V1.0040.96
363_H367_T1.0030.96
527_R531_E1.0020.96
481_A485_L1.0000.96
130_N366_S0.9990.96
523_K530_I0.9970.96
10_V243_A0.9960.96
155_I388_F0.9940.96
523_K527_R0.9940.96
233_A237_L0.9930.96
500_G518_I0.9920.96
434_Q438_E0.9910.96
30_I37_I0.9900.96
201_A205_V0.9870.95
215_H237_L0.9840.95
196_L213_F0.9840.95
401_K468_D0.9840.95
206_L211_R0.9810.95
419_E527_R0.9790.95
11_V15_V0.9700.95
200_F213_F0.9700.95
106_V171_A0.9690.95
201_A208_F0.9680.95
167_V345_L0.9680.95
240_V244_L0.9670.95
42_I530_I0.9650.95
78_D265_L0.9600.95
477_E504_H0.9590.95
429_V446_F0.9590.95
390_K395_E0.9560.95
206_L213_F0.9540.95
404_I471_V0.9500.94
137_I178_L0.9470.94
392_Y396_E0.9450.94
404_I469_I0.9450.94
413_T431_H0.9420.94
393_K397_Q0.9400.94
164_I292_V0.9380.94
520_L524_T0.9380.94
521_S526_L0.9370.94
204_V213_F0.9370.94
411_Q498_S0.9360.94
197_M200_F0.9350.94
480_N511_Q0.9350.94
223_S268_P0.9340.94
521_S524_T0.9340.94
222_M233_A0.9340.94
482_D485_L0.9340.94
168_A171_A0.9330.94
477_E507_A0.9300.94
24_H29_S0.9280.94
222_M230_G0.9280.94
331_K338_I0.9270.94
304_D368_N0.9180.93
171_A350_S0.9180.93
472_V497_A0.9160.93
474_T480_N0.9160.93
246_E272_L0.9150.93
502_P517_S0.9120.93
199_L202_A0.9120.93
516_F525_L0.9110.93
359_G362_L0.9060.93
103_A106_V0.9060.93
193_M196_L0.9040.93
77_I264_S0.8970.93
47_G50_L0.8950.92
201_A213_F0.8930.92
191_G195_L0.8900.92
291_M295_K0.8890.92
171_A351_L0.8860.92
193_M204_V0.8810.92
417_T427_V0.8790.92
198_I206_L0.8790.92
83_E86_K0.8730.92
206_L210_G0.8730.92
220_Q224_K0.8720.91
117_L186_Y0.8690.91
404_I420_L0.8680.91
256_A338_I0.8670.91
456_H486_L0.8660.91
109_V379_I0.8650.91
383_F387_C0.8600.91
127_F131_A0.8570.91
87_K302_F0.8550.91
311_I315_L0.8520.91
153_E389_K0.8490.90
523_K531_E0.8480.90
377_A380_A0.8470.90
441_L448_V0.8450.90
498_S518_I0.8440.90
201_A204_V0.8420.90
320_V323_I0.8410.90
504_H508_L0.8410.90
138_I318_L0.8400.90
199_L207_Y0.8400.90
517_S524_T0.8390.90
108_F113_I0.8350.90
10_V236_T0.8300.89
199_L206_L0.8290.89
471_V496_I0.8280.89
409_A429_V0.8250.89
413_T473_A0.8240.89
365_I369_M0.8240.89
344_L388_F0.8230.89
479_M482_D0.8230.89
76_E144_G0.8220.89
146_V168_A0.8180.89
111_I128_I0.8180.89
10_V239_I0.8160.89
416_V471_V0.8160.89
25_R29_S0.8160.89
515_I526_L0.8160.89
379_I383_F0.8130.88
232_R283_F0.8120.88
356_A365_I0.8050.88
196_L206_L0.8030.88
409_A446_F0.8020.88
513_I517_S0.8020.88
496_I530_I0.8000.88
205_V213_F0.8000.88
228_Q232_R0.7970.87
334_D338_I0.7960.87
335_N342_G0.7960.87
206_L212_V0.7960.87
229_I523_K0.7930.87
16_A215_H0.7930.87
430_V449_E0.7910.87
104_A383_F0.7890.87
413_T437_A0.7880.87
116_L120_Y0.7850.87
143_L350_S0.7850.87
319_L322_K0.7850.87
85_G88_K0.7850.87
45_K294_V0.7840.86
332_W335_N0.7830.86
141_I144_G0.7820.86
174_A329_L0.7810.86
389_K395_E0.7770.86
475_G518_I0.7760.86
112_F132_F0.7750.86
303_Q309_I0.7750.86
23_L38_I0.7700.85
144_G286_P0.7700.85
192_N198_I0.7680.85
43_I294_V0.7680.85
85_G89_Q0.7670.85
511_Q514_S0.7670.85
456_H489_D0.7660.85
522_T525_L0.7640.85
427_V447_A0.7640.85
167_V175_T0.7620.85
171_A175_T0.7600.85
277_D282_G0.7580.85
319_L387_C0.7570.85
67_I70_M0.7570.85
205_V327_M0.7550.84
234_I290_V0.7530.84
148_P282_G0.7520.84
407_I474_T0.7480.84
230_G234_I0.7470.84
171_A288_F0.7460.84
469_I494_R0.7460.84
506_A509_K0.7450.84
430_V451_I0.7450.84
520_L523_K0.7440.83
394_R397_Q0.7440.83
205_V490_K0.7440.83
39_M266_L0.7430.83
140_T175_T0.7400.83
421_P427_V0.7380.83
430_V462_L0.7380.83
232_R282_G0.7370.83
74_G293_G0.7360.83
231_T254_L0.7350.83
36_E44_G0.7330.83
369_M372_A0.7330.83
65_G255_G0.7330.83
28_L454_Y0.7320.82
112_F128_I0.7310.82
196_L210_G0.7310.82
38_I394_R0.7290.82
397_Q489_D0.7280.82
505_E515_I0.7260.82
77_I294_V0.7260.82
321_S328_Y0.7250.82
336_R340_A0.7250.82
234_I264_S0.7240.82
144_G168_A0.7230.82
87_K90_F0.7220.82
343_F391_L0.7210.82
498_S519_L0.7210.82
114_L118_L0.7200.81
518_I522_T0.7190.81
89_Q170_I0.7180.81
36_E286_P0.7180.81
133_L182_F0.7170.81
500_G517_S0.7160.81
38_I481_A0.7160.81
102_A351_L0.7160.81
326_V329_L0.7130.81
411_Q500_G0.7120.81
317_A320_V0.7100.81
319_L323_I0.7040.80
84_K87_K0.7030.80
412_M473_A0.6990.79
142_S288_F0.6970.79
62_S291_M0.6970.79
88_K163_I0.6970.79
130_N369_M0.6970.79
413_T453_D0.6950.79
204_V262_L0.6950.79
468_D494_R0.6940.79
370_S374_I0.6930.79
110_G138_I0.6930.79
421_P446_F0.6920.79
518_I524_T0.6920.79
20_P286_P0.6920.79
155_I340_A0.6920.79
404_I425_Y0.6910.79
417_T429_V0.6900.79
314_L317_A0.6900.79
25_R28_L0.6890.79
176_M253_I0.6880.78
367_T401_K0.6880.78
433_Y448_V0.6880.78
436_N441_L0.6860.78
439_E443_E0.6860.78
381_S384_T0.6840.78
323_I343_F0.6820.78
131_A342_G0.6820.78
525_L528_A0.6810.78
417_T441_L0.6800.78
484_A497_A0.6800.78
359_G363_H0.6790.78
192_N195_L0.6760.77
128_I131_A0.6740.77
111_I114_L0.6730.77
194_W200_F0.6730.77
73_S143_L0.6730.77
134_M138_I0.6710.77
142_S347_S0.6680.76
311_I321_S0.6680.76
496_I526_L0.6640.76
28_L269_N0.6640.76
230_G268_P0.6640.76
321_S324_I0.6640.76
304_D310_M0.6630.76
365_I373_L0.6630.76
312_P315_L0.6630.76
53_E56_T0.6630.76
273_V286_P0.6610.76
107_I111_I0.6600.76
198_I205_V0.6600.76
137_I365_I0.6600.76
197_M208_F0.6600.76
160_I341_S0.6570.75
411_Q475_G0.6560.75
428_R464_I0.6560.75
234_I238_I0.6550.75
109_V321_S0.6540.75
6_V243_A0.6530.75
73_S77_I0.6530.75
11_V43_I0.6530.75
49_N62_S0.6520.75
187_G190_S0.6510.75
204_V258_L0.6500.74
296_L375_L0.6490.74
271_E274_Q0.6450.74
241_L262_L0.6440.74
232_R284_L0.6440.74
314_L372_A0.6430.74
189_D202_A0.6430.74
143_L351_L0.6420.73
304_D308_L0.6420.73
333_Y337_T0.6410.73
115_S120_Y0.6400.73
109_V114_L0.6390.73
318_L380_A0.6370.73
68_F179_L0.6370.73
175_T179_L0.6370.73
288_F293_G0.6370.73
120_Y134_M0.6360.73
138_I411_Q0.6350.73
405_T463_G0.6340.73
145_V429_V0.6340.73
136_L181_V0.6330.72
410_N473_A0.6330.72
252_N287_I0.6330.72
338_I342_G0.6320.72
15_V22_L0.6320.72
34_V359_G0.6310.72
204_V209_F0.6300.72
272_L284_L0.6300.72
308_L313_L0.6300.72
143_L168_A0.6290.72
140_T144_G0.6290.72
233_A238_I0.6250.72
324_I503_E0.6250.72
111_I132_F0.6240.71
10_V258_L0.6220.71
202_A303_Q0.6210.71
176_M354_A0.6200.71
168_A350_S0.6200.71
65_G257_F0.6200.71
470_L483_I0.6190.71
323_I342_G0.6190.71
219_V233_A0.6190.71
206_L262_L0.6180.71
218_F221_S0.6170.71
476_N481_A0.6170.71
308_L312_P0.6160.70
197_M213_F0.6150.70
197_M316_L0.6140.70
297_D300_T0.6130.70
193_M208_F0.6130.70
230_G233_A0.6120.70
204_V208_F0.6110.70
85_G92_P0.6110.70
216_R266_L0.6100.70
326_V341_S0.6090.70
437_A450_T0.6070.69
14_I18_L0.6070.69
527_R530_I0.6070.69
144_G175_T0.6060.69
198_I201_A0.6060.69
92_P102_A0.6060.69
502_P505_E0.6050.69
116_L379_I0.6040.69
193_M213_F0.6040.69
69_L341_S0.6040.69
311_I314_L0.6030.69
117_L443_E0.6020.69
104_A468_D0.6010.69
403_T467_T0.6010.69
32_V89_Q0.6000.68
131_A366_S0.6000.68
526_L530_I0.6000.68
119_S127_F0.5990.68
495_V513_I0.5990.68
65_G288_F0.5990.68
106_V109_V0.5980.68
497_A511_Q0.5960.68
513_I526_L0.5950.68
304_D324_I0.5930.68
90_F102_A0.5920.67
435_E439_E0.5920.67
276_L279_F0.5910.67
421_P444_S0.5910.67
200_F207_Y0.5890.67
191_G204_V0.5880.67
223_S230_G0.5880.67
89_Q102_A0.5870.67
319_L346_T0.5870.67
14_I240_V0.5860.67
439_E444_S0.5860.67
404_I530_I0.5860.67
220_Q267_S0.5850.66
75_L133_L0.5830.66
299_W303_Q0.5830.66
67_I252_N0.5820.66
414_L444_S0.5820.66
313_L320_V0.5820.66
377_A384_T0.5820.66
138_I373_L0.5810.66
398_P401_K0.5810.66
411_Q414_L0.5810.66
89_Q92_P0.5810.66
254_L284_L0.5800.66
116_L510_E0.5800.66
106_V325_P0.5790.66
334_D337_T0.5780.66
398_P464_I0.5770.65
77_I138_I0.5760.65
110_G113_I0.5760.65
486_L515_I0.5760.65
193_M201_A0.5760.65
23_L35_A0.5750.65
218_F271_E0.5740.65
9_L61_L0.5740.65
373_L386_I0.5740.65
384_T388_F0.5730.65
130_N324_I0.5730.65
116_L128_I0.5730.65
251_E257_F0.5720.65
181_V315_L0.5720.65
517_S528_A0.5720.65
77_I147_V0.5710.65
524_T529_L0.5700.64
200_F206_L0.5690.64
309_I489_D0.5680.64
117_L316_L0.5680.64
108_F111_I0.5680.64
473_A520_L0.5680.64
208_F213_F0.5680.64
150_L164_I0.5680.64
226_T239_I0.5660.64
324_I327_M0.5640.64
86_K524_T0.5630.64
198_I204_V0.5630.64
382_I386_I0.5620.63
145_V388_F0.5620.63
411_Q519_L0.5620.63
31_P137_I0.5590.63
401_K426_D0.5590.63
349_L353_I0.5580.63
438_E442_S0.5570.63
465_F493_E0.5570.63
37_I43_I0.5570.63
77_I295_K0.5570.63
149_T263_V0.5570.63
456_H460_E0.5560.63
146_V317_A0.5550.62
360_Q365_I0.5550.62
511_Q516_F0.5540.62
83_E496_I0.5520.62
181_V301_L0.5510.62
108_F218_F0.5510.62
146_V347_S0.5500.62
169_V287_I0.5500.62
322_K345_L0.5490.62
192_N211_R0.5480.61
405_T447_A0.5470.61
52_V58_L0.5470.61
145_V285_I0.5470.61
113_I313_L0.5460.61
131_A194_W0.5460.61
434_Q437_A0.5450.61
205_V211_R0.5440.61
227_I275_Q0.5420.61
213_F217_S0.5420.61
143_L253_I0.5420.61
405_T428_R0.5420.61
405_T416_V0.5420.61
69_L143_L0.5420.61
90_F100_T0.5420.61
164_I345_L0.5410.60
176_M347_S0.5390.60
116_L119_S0.5390.60
63_M143_L0.5390.60
477_E484_A0.5390.60
150_L155_I0.5380.60
431_H452_S0.5370.60
11_V312_P0.5370.60
472_V513_I0.5360.60
138_I348_T0.5360.60
32_V342_G0.5360.60
228_Q239_I0.5350.60
497_A513_I0.5350.60
144_G381_S0.5350.60
312_P321_S0.5350.60
143_L171_A0.5340.60
438_E485_L0.5340.60
367_T371_G0.5340.60
77_I271_E0.5330.59
141_I350_S0.5320.59
55_D428_R0.5320.59
21_I232_R0.5300.59
520_L525_L0.5300.59
128_I132_F0.5290.59
73_S140_T0.5270.59
453_D474_T0.5260.58
450_T499_V0.5250.58
144_G354_A0.5250.58
237_L241_L0.5250.58
148_P152_E0.5250.58
356_A377_A0.5250.58
11_V50_L0.5240.58
382_I385_P0.5230.58
456_H491_G0.5230.58
415_P520_L0.5230.58
134_M318_L0.5220.58
114_L131_A0.5220.58
497_A508_L0.5210.58
33_V140_T0.5210.58
517_S522_T0.5210.58
342_G391_L0.5200.58
196_L207_Y0.5200.58
133_L167_V0.5170.57
118_L310_M0.5170.57
507_A511_Q0.5160.57
300_T316_L0.5160.57
43_I127_F0.5160.57
203_G206_L0.5150.57
23_L34_V0.5150.57
406_F523_K0.5140.57
110_G397_Q0.5140.57
196_L212_V0.5140.57
255_G288_F0.5130.56
304_D366_S0.5120.56
192_N197_M0.5110.56
330_K341_S0.5110.56
90_F99_N0.5110.56
19_T39_M0.5110.56
20_P32_V0.5090.56
116_L324_I0.5090.56
430_V458_T0.5080.56
419_E520_L0.5070.56
42_I304_D0.5050.55
398_P466_E0.5050.55
525_L531_E0.5050.55
193_M212_V0.5040.55
323_I330_K0.5030.55
72_L229_I0.5030.55
69_L171_A0.5020.55
418_L473_A0.5010.55
76_E168_A0.5010.55
234_I272_L0.5010.55
61_L419_E0.5000.55
222_M268_P0.5000.55
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4bwzA 2 0.6156 100 0.607 Contact Map
4cz8A 2 0.614 100 0.636 Contact Map
4czbA 2 0.6189 100 0.643 Contact Map
1lnqA 6 0.4658 100 0.738 Contact Map
4gx0A 3 0.4967 100 0.743 Contact Map
2aefA 2 0.3404 100 0.757 Contact Map
3l4bC 2 0.3453 100 0.779 Contact Map
3mt5A 5 0.3355 100 0.782 Contact Map
3nafA 3 0.3583 100 0.782 Contact Map
4g65A 2 0.3485 100 0.786 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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