YJBH - BACSU - GREMLIN Contacts

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YJBH - UPF0413 protein YjbH

UniProt:	O31606	Sequences: MTNYQHELYFAHCHGHPKKPLEIYMFVDPLCPECWSLEPVIKKLKIRYGRFFTLRIIASASLTALNKKRKKHLLAEAWEKIASRSGMSCDGNVWFEQDQPLSSPYMAALAFKAAELQGRKAGMQFLRNMQESLFVSKKNITDENVLLEIAENTSLDLEEFKKDLHSQSAVKALQCDMKIAAEMDVSVNPTLTFFNTQHEDEGLKVPGSYSYDVYEEILFEMLGDEPKPSETPPLECFIEYFRFVASKEIALVYDLSLEEVEKEMKKLAFAKKVAKVEAKHGMFWKSLSTYSDEYQSCEK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	299 (268)
Sequences:	269 (223)
Seq/√Len:	13.6

BACSU - YJBH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
249_I	260_V	5.376	1.00
173_L	177_M	4.193	1.00
21_L	218_L	4.092	1.00
109_L	173_L	3.529	0.99
237_F	244_V	3.320	0.98
129_M	146_L	3.314	0.98
117_Q	163_D	3.095	0.98
99_Q	142_D	2.805	0.96
79_E	88_S	2.766	0.95
249_I	264_M	2.664	0.94
62_L	139_N	2.643	0.94
247_K	251_L	2.632	0.94
261_E	275_K	2.623	0.94
250_A	260_V	2.528	0.92
22_E	55_R	2.339	0.89
245_A	283_F	2.337	0.89
38_E	130_Q	2.315	0.88
26_F	180_A	2.228	0.86
24_Y	202_G	2.196	0.86
222_L	226_P	2.184	0.85
94_W	100_P	2.137	0.84
72_H	238_I	2.065	0.82
78_W	87_M	1.980	0.79
18_K	221_M	1.947	0.78
260_V	264_M	1.926	0.77
89_C	104_P	1.906	0.76
112_K	115_E	1.906	0.76
59_S	188_N	1.903	0.76
276_V	285_K	1.852	0.74
250_A	256_S	1.832	0.73
108_A	134_F	1.820	0.73
96_E	137_K	1.770	0.70
36_S	82_A	1.768	0.70
27_V	80_K	1.733	0.69
18_K	148_E	1.731	0.69
26_F	183_M	1.723	0.68
243_F	276_V	1.704	0.67
130_Q	179_I	1.685	0.66
110_A	150_A	1.683	0.66
47_R	135_V	1.665	0.65
72_H	124_Q	1.653	0.65
87_M	90_D	1.642	0.64
132_S	154_S	1.615	0.63
80_K	246_S	1.608	0.63
117_Q	211_Y	1.579	0.61
34_C	134_F	1.575	0.61
246_S	260_V	1.565	0.60
47_R	211_Y	1.557	0.60
188_N	280_H	1.556	0.60
15_G	158_E	1.540	0.59
238_I	264_M	1.511	0.58
232_P	253_Y	1.510	0.58
27_V	61_S	1.495	0.57
112_K	176_D	1.484	0.56
185_V	195_N	1.480	0.56
75_A	91_G	1.462	0.55
114_A	155_L	1.458	0.55
78_W	100_P	1.449	0.54
80_K	106_M	1.438	0.54
231_T	270_A	1.436	0.54
193_F	261_E	1.412	0.52
135_V	279_K	1.397	0.52
74_L	177_M	1.373	0.50
181_A	221_M	1.371	0.50
223_G	276_V	1.369	0.50
94_W	137_K	1.360	0.50
103_S	233_P	1.360	0.50
58_A	173_L	1.352	0.49
118_G	122_G	1.343	0.49
183_M	195_N	1.338	0.48
110_A	160_F	1.332	0.48
116_L	193_F	1.327	0.48
74_L	77_A	1.325	0.48
118_G	126_L	1.314	0.47
24_Y	183_M	1.312	0.47
50_R	129_M	1.309	0.47
36_S	62_L	1.305	0.47
278_A	283_F	1.266	0.45
54_L	228_P	1.228	0.43
109_L	196_T	1.222	0.42
196_T	221_M	1.216	0.42
78_W	90_D	1.192	0.41
81_I	134_F	1.188	0.41
124_Q	155_L	1.185	0.40
110_A	164_L	1.184	0.40
171_K	175_C	1.179	0.40
67_K	73_L	1.174	0.40
43_K	267_L	1.169	0.40
178_K	274_A	1.165	0.39
32_P	62_L	1.158	0.39
191_L	205_V	1.154	0.39
151_E	157_L	1.153	0.39
109_L	177_M	1.150	0.39
52_F	218_L	1.138	0.38
117_Q	155_L	1.129	0.38
252_V	283_F	1.127	0.37
62_L	195_N	1.125	0.37
137_K	279_K	1.117	0.37
84_R	244_V	1.116	0.37
77_A	111_F	1.116	0.37
263_E	266_K	1.111	0.37
210_S	274_A	1.111	0.37
27_V	106_M	1.103	0.36
32_P	82_A	1.096	0.36
166_S	269_F	1.095	0.36
75_A	88_S	1.093	0.36
79_E	93_V	1.092	0.36
158_E	258_E	1.089	0.36
163_D	211_Y	1.085	0.35
194_F	204_K	1.078	0.35
99_Q	139_N	1.077	0.35
78_W	91_G	1.069	0.35
166_S	271_K	1.056	0.34
134_F	214_Y	1.044	0.33
17_P	212_D	1.044	0.33
62_L	65_L	1.041	0.33
127_R	207_G	1.037	0.33
45_K	217_I	1.028	0.33
152_N	190_T	1.025	0.32
88_S	188_N	1.023	0.32
48_Y	252_V	1.023	0.32
87_M	91_G	1.020	0.32
144_N	161_K	1.018	0.32
127_R	131_E	1.016	0.32
27_V	104_P	1.016	0.32
143_E	173_L	1.011	0.32
22_E	117_Q	1.011	0.32
85_S	208_S	1.008	0.32
226_P	229_S	1.008	0.32
190_T	210_S	1.004	0.31
59_S	130_Q	1.003	0.31
133_L	173_L	1.001	0.31
282_M	285_K	1.000	0.31
233_P	253_Y	1.000	0.31
35_W	131_E	0.997	0.31
27_V	122_G	0.996	0.31
85_S	203_L	0.995	0.31
57_I	179_I	0.993	0.31
120_K	130_Q	0.991	0.31
125_F	142_D	0.979	0.30
95_F	221_M	0.974	0.30
32_P	140_I	0.969	0.30
29_P	39_P	0.968	0.30
199_E	218_L	0.966	0.30
50_R	178_K	0.964	0.30
75_A	96_E	0.964	0.30
35_W	94_W	0.957	0.29
87_M	245_A	0.950	0.29
89_C	279_K	0.945	0.29
60_A	78_W	0.944	0.29
148_E	152_N	0.939	0.29
87_M	251_L	0.937	0.28
183_M	202_G	0.937	0.28
246_S	250_A	0.936	0.28
85_S	89_C	0.935	0.28
51_F	254_D	0.927	0.28
236_C	265_K	0.915	0.28
53_T	272_K	0.912	0.27
22_E	172_A	0.909	0.27
92_N	231_T	0.909	0.27
132_S	162_K	0.909	0.27
137_K	281_G	0.906	0.27
195_N	199_E	0.905	0.27
31_C	127_R	0.904	0.27
162_K	212_D	0.904	0.27
114_A	267_L	0.904	0.27
92_N	137_K	0.903	0.27
18_K	83_S	0.897	0.27
86_G	200_D	0.896	0.27
149_I	153_T	0.893	0.27
31_C	34_C	0.891	0.27
35_W	65_L	0.891	0.27
26_F	209_Y	0.887	0.26
168_S	233_P	0.886	0.26
75_A	103_S	0.883	0.26
112_K	163_D	0.880	0.26
125_F	146_L	0.880	0.26
62_L	140_I	0.875	0.26
119_R	233_P	0.874	0.26
274_A	285_K	0.872	0.26
135_V	251_L	0.869	0.26
133_L	140_I	0.868	0.26
245_A	281_G	0.866	0.25
238_I	249_I	0.865	0.25
276_V	284_W	0.865	0.25
28_D	189_P	0.865	0.25
52_F	202_G	0.864	0.25
22_E	118_G	0.863	0.25
202_G	232_P	0.859	0.25
194_F	202_G	0.859	0.25
162_K	276_V	0.859	0.25
25_M	206_P	0.856	0.25
90_D	251_L	0.854	0.25
100_P	139_N	0.854	0.25
95_F	264_M	0.849	0.25
81_I	89_C	0.841	0.24
85_S	260_V	0.841	0.24
78_W	188_N	0.833	0.24
63_T	205_V	0.831	0.24
144_N	228_P	0.827	0.24
148_E	203_L	0.824	0.24
21_L	158_E	0.824	0.24
178_K	182_E	0.824	0.24
62_L	100_P	0.822	0.24
149_I	180_A	0.821	0.24
35_W	78_W	0.815	0.23
163_D	284_W	0.813	0.23
70_K	73_L	0.810	0.23
142_D	240_Y	0.809	0.23
61_S	106_M	0.805	0.23
39_P	87_M	0.804	0.23
54_L	213_V	0.804	0.23
183_M	194_F	0.800	0.23
259_E	276_V	0.798	0.23
65_L	130_Q	0.797	0.23
30_L	38_E	0.787	0.22
187_V	201_E	0.786	0.22
55_R	139_N	0.782	0.22
18_K	196_T	0.781	0.22
245_A	252_V	0.781	0.22
277_E	283_F	0.780	0.22
136_S	152_N	0.773	0.22
257_L	275_K	0.772	0.22
119_R	255_L	0.771	0.22
21_L	76_E	0.770	0.22
32_P	81_I	0.769	0.22
102_S	126_L	0.766	0.22
27_V	153_T	0.762	0.21
85_S	255_L	0.762	0.21
70_K	78_W	0.762	0.21
245_A	278_A	0.761	0.21
96_E	279_K	0.761	0.21
73_L	187_V	0.760	0.21
24_Y	204_K	0.759	0.21
147_L	164_L	0.744	0.21
74_L	109_L	0.743	0.21
93_V	247_K	0.742	0.21
26_F	276_V	0.742	0.21
26_F	113_A	0.742	0.21
125_F	174_Q	0.741	0.21
104_P	279_K	0.736	0.21
113_A	284_W	0.733	0.20
175_C	182_E	0.733	0.20
110_A	172_A	0.732	0.20
71_K	78_W	0.730	0.20
120_K	178_K	0.729	0.20
129_M	282_M	0.729	0.20
40_V	155_L	0.728	0.20
80_K	188_N	0.727	0.20
264_M	284_W	0.726	0.20
110_A	114_A	0.725	0.20
144_N	162_K	0.724	0.20
71_K	164_L	0.723	0.20
54_L	272_K	0.720	0.20
26_F	174_Q	0.719	0.20
144_N	223_G	0.719	0.20
206_P	246_S	0.717	0.20
88_S	104_P	0.716	0.20
54_L	123_M	0.715	0.20
75_A	94_W	0.711	0.20
41_I	54_L	0.710	0.20
74_L	187_V	0.707	0.20
163_D	166_S	0.706	0.20
116_L	150_A	0.706	0.20
130_Q	253_Y	0.704	0.19
160_F	183_M	0.703	0.19
150_A	160_F	0.702	0.19
160_F	180_A	0.700	0.19
162_K	228_P	0.700	0.19
52_F	272_K	0.700	0.19
81_I	88_S	0.697	0.19
260_V	282_M	0.696	0.19
23_I	148_E	0.696	0.19
104_P	107_A	0.688	0.19
60_A	71_K	0.687	0.19
75_A	79_E	0.685	0.19
179_I	241_F	0.684	0.19
81_I	188_N	0.683	0.19
148_E	221_M	0.682	0.19
18_K	242_R	0.677	0.19
106_M	250_A	0.674	0.18
261_E	274_A	0.674	0.18
218_L	254_D	0.673	0.18
64_A	77_A	0.673	0.18
48_Y	127_R	0.672	0.18
219_F	227_K	0.671	0.18
204_K	232_P	0.669	0.18
61_S	104_P	0.663	0.18
236_C	239_E	0.661	0.18
24_Y	194_F	0.660	0.18
32_P	65_L	0.655	0.18
143_E	161_K	0.653	0.18
32_P	37_L	0.652	0.18
80_K	122_G	0.649	0.18
175_C	178_K	0.648	0.18
37_L	65_L	0.646	0.18
178_K	265_K	0.645	0.18
21_L	223_G	0.641	0.17
136_S	245_A	0.641	0.17
155_L	218_L	0.639	0.17
157_L	160_F	0.638	0.17
155_L	163_D	0.637	0.17
25_M	100_P	0.636	0.17
87_M	94_W	0.635	0.17
162_K	256_S	0.634	0.17
15_G	138_K	0.633	0.17
17_P	167_Q	0.631	0.17
114_A	163_D	0.630	0.17
61_S	88_S	0.628	0.17
75_A	153_T	0.628	0.17
56_I	173_L	0.628	0.17
259_E	270_A	0.627	0.17
31_C	38_E	0.623	0.17
22_E	115_E	0.621	0.17
32_P	188_N	0.612	0.17
113_A	129_M	0.610	0.16
148_E	196_T	0.609	0.16
94_W	281_G	0.607	0.16
33_E	279_K	0.605	0.16
25_M	139_N	0.604	0.16
16_H	231_T	0.603	0.16
93_V	205_V	0.602	0.16
147_L	161_K	0.600	0.16
237_F	253_Y	0.598	0.16
26_F	253_Y	0.596	0.16
133_L	185_V	0.595	0.16
27_V	130_Q	0.594	0.16
96_E	99_Q	0.594	0.16
69_R	181_A	0.591	0.16
52_F	254_D	0.588	0.16
218_L	232_P	0.583	0.16
181_A	260_V	0.582	0.16
212_D	224_D	0.582	0.16
71_K	77_A	0.581	0.16
42_K	252_V	0.581	0.16
139_N	161_K	0.580	0.16
164_L	276_V	0.580	0.16
107_A	260_V	0.578	0.16
219_F	225_E	0.578	0.16
73_L	77_A	0.576	0.16
202_G	265_K	0.575	0.15
113_A	169_A	0.575	0.15
31_C	134_F	0.574	0.15
162_K	231_T	0.571	0.15
76_E	167_Q	0.568	0.15
51_F	222_L	0.568	0.15
31_C	131_E	0.565	0.15
41_I	67_K	0.565	0.15
145_V	260_V	0.565	0.15
89_C	244_V	0.565	0.15
74_L	78_W	0.564	0.15
195_N	222_L	0.564	0.15
104_P	209_Y	0.563	0.15
142_D	285_K	0.562	0.15
82_A	91_G	0.558	0.15
46_I	121_A	0.555	0.15
26_F	116_L	0.555	0.15
204_K	265_K	0.555	0.15
60_A	103_S	0.553	0.15
255_L	260_V	0.552	0.15
45_K	227_K	0.552	0.15
25_M	59_S	0.552	0.15
146_L	232_P	0.551	0.15
146_L	180_A	0.548	0.15
238_I	273_V	0.547	0.15
118_G	163_D	0.547	0.15
114_A	117_Q	0.546	0.15
122_G	165_H	0.545	0.15
24_Y	160_F	0.545	0.15
71_K	99_Q	0.545	0.15
34_C	112_K	0.543	0.15
103_S	230_E	0.542	0.15
81_I	84_R	0.540	0.15
148_E	168_S	0.537	0.14
112_K	204_K	0.536	0.14
61_S	280_H	0.536	0.14
133_L	285_K	0.530	0.14
131_E	163_D	0.530	0.14
261_E	284_W	0.530	0.14
71_K	217_I	0.529	0.14
36_S	75_A	0.529	0.14
256_S	265_K	0.528	0.14
61_S	268_A	0.528	0.14
49_G	60_A	0.527	0.14
59_S	264_M	0.523	0.14
63_T	280_H	0.520	0.14
153_T	239_E	0.516	0.14
168_S	230_E	0.516	0.14
173_L	203_L	0.514	0.14
160_F	273_V	0.513	0.14
45_K	61_S	0.510	0.14
17_P	106_M	0.508	0.14
24_Y	54_L	0.507	0.14
86_G	244_V	0.507	0.14
62_L	66_N	0.507	0.14
93_V	215_E	0.505	0.14
179_I	191_L	0.504	0.14
78_W	99_Q	0.503	0.14
78_W	88_S	0.502	0.14
109_L	236_C	0.501	0.14
275_K	282_M	0.501	0.14
237_F	252_V	0.500	0.14

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2in3A	1	0.6689	100	0.69	Contact Map
3kzqA	3	0.6789	100	0.697	Contact Map
3rppA	2	0.6923	100	0.709	Contact Map
1r4wA	2	0.7057	100	0.715	Contact Map
3fz5A	2	0.6321	100	0.725	Contact Map
3gl5A	2	0.7124	100	0.731	Contact Map
2imfA	2	0.6488	100	0.738	Contact Map
3ghaA	1	0.5753	99.9	0.774	Contact Map
3hz8A	1	0.6254	99.9	0.777	Contact Map
4p3yB	1	0.592	99.9	0.779	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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