YJBC - BACSU - GREMLIN Contacts

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YJBC - Putative acetyltransferase YjbC

UniProt:	O31601	Sequences: MNWYEKLSEYFPIEEMKSKAHMEALLKERSDIYHKDEGKHHILMFAEFDSFIFVDYLYVSKDARGQGLGGKLIAKLKKKNKPILLEVEPVDEDDTDTEKRLRFYQREHFKHAQSIGYRRRSLATNEVNKMEILYWSPKTESEEEILEAMKQTYENIHTYKDEKWYGESYEKTDEVLEIIDEEKQKNIFDQLS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	192 (184)
Sequences:	105 (67)
Seq/√Len:	4.9

BACSU - YJBC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
24_A	164_W	3.354	0.78
9_E	61_K	3.188	0.75
57_L	152_T	3.133	0.73
52_I	130_M	3.005	0.70
58_Y	152_T	2.996	0.70
144_E	148_A	2.841	0.65
130_M	151_Q	2.785	0.64
22_M	32_I	2.622	0.59
170_E	174_E	2.603	0.58
102_R	177_E	2.507	0.55
58_Y	68_L	2.504	0.55
52_I	93_D	2.348	0.50
80_N	162_E	2.330	0.49
46_A	73_I	2.250	0.47
149_M	176_L	2.233	0.46
34_H	118_R	2.206	0.45
92_E	95_T	2.160	0.44
84_L	92_E	2.156	0.44
29_R	155_N	2.074	0.41
43_L	171_K	2.073	0.41
102_R	147_E	2.036	0.40
38_G	68_L	2.024	0.40
91_D	148_A	2.022	0.40
2_N	78_K	1.942	0.37
40_H	66_Q	1.817	0.33
29_R	62_D	1.752	0.32
30_S	125_N	1.749	0.32
46_A	54_V	1.748	0.32
30_S	74_A	1.743	0.31
48_F	152_T	1.682	0.30
80_N	110_K	1.668	0.29
68_L	106_R	1.564	0.27
80_N	181_E	1.561	0.27
39_K	155_N	1.507	0.25
49_D	155_N	1.485	0.25
34_H	125_N	1.478	0.25
84_L	148_A	1.462	0.24
74_A	184_Q	1.448	0.24
8_S	95_T	1.422	0.23
90_V	95_T	1.398	0.23
20_A	164_W	1.392	0.23
97_T	139_T	1.378	0.22
23_E	75_K	1.376	0.22
101_L	129_K	1.359	0.22
118_R	129_K	1.354	0.22
50_S	90_V	1.339	0.21
19_K	23_E	1.332	0.21
38_G	63_A	1.323	0.21
129_K	179_I	1.318	0.21
80_N	183_K	1.305	0.21
46_A	49_D	1.305	0.21
118_R	139_T	1.295	0.20
91_D	178_I	1.288	0.20
40_H	140_E	1.279	0.20
39_K	80_N	1.273	0.20
98_E	171_K	1.265	0.20
68_L	152_T	1.261	0.20
35_K	156_I	1.248	0.20
139_T	146_L	1.231	0.19
150_K	176_L	1.220	0.19
66_Q	151_Q	1.217	0.19
136_S	140_E	1.214	0.19
40_H	62_D	1.210	0.19
179_I	182_E	1.207	0.19
2_N	14_E	1.197	0.19
110_K	130_M	1.196	0.18
80_N	184_Q	1.185	0.18
6_K	42_I	1.176	0.18
52_I	182_E	1.170	0.18
70_G	107_E	1.169	0.18
105_Q	184_Q	1.157	0.18
167_E	174_E	1.152	0.18
48_F	144_E	1.126	0.17
43_L	105_Q	1.122	0.17
32_I	48_F	1.122	0.17
44_M	116_G	1.109	0.17
70_G	73_I	1.107	0.17
63_A	155_N	1.105	0.17
49_D	159_Y	1.084	0.16
90_V	98_E	1.077	0.16
93_D	176_L	1.073	0.16
118_R	127_V	1.059	0.16
51_F	96_D	1.049	0.16
127_V	152_T	1.042	0.16
171_K	180_D	1.041	0.16
21_H	124_T	1.039	0.16
144_E	183_K	1.033	0.16
70_G	130_M	1.027	0.15
36_D	75_K	1.019	0.15
110_K	184_Q	1.014	0.15
52_I	174_E	1.014	0.15
54_V	70_G	1.012	0.15
129_K	141_S	1.012	0.15
155_N	164_W	1.002	0.15
111_H	133_L	1.002	0.15
73_I	78_K	1.002	0.15
147_E	177_E	0.991	0.15
2_N	144_E	0.968	0.14
151_Q	155_N	0.953	0.14
54_V	163_K	0.951	0.14
105_Q	130_M	0.948	0.14
82_P	87_V	0.947	0.14
30_S	167_E	0.945	0.14
46_A	68_L	0.941	0.14
70_G	80_N	0.935	0.14
9_E	97_T	0.929	0.14
50_S	182_E	0.924	0.14
94_D	111_H	0.922	0.14
91_D	167_E	0.918	0.14
78_K	163_K	0.917	0.14
150_K	159_Y	0.910	0.14
167_E	180_D	0.909	0.14
170_E	182_E	0.909	0.14
54_V	130_M	0.909	0.14
95_T	146_L	0.909	0.14
28_E	114_S	0.905	0.14
50_S	57_L	0.901	0.13
171_K	182_E	0.901	0.13
139_T	178_I	0.896	0.13
36_D	140_E	0.892	0.13
155_N	183_K	0.887	0.13
84_L	129_K	0.868	0.13
30_S	34_H	0.868	0.13
31_D	34_H	0.864	0.13
66_Q	140_E	0.861	0.13
106_R	139_T	0.859	0.13
167_E	170_E	0.856	0.13
105_Q	139_T	0.846	0.13
50_S	152_T	0.845	0.13
154_E	167_E	0.842	0.13
54_V	141_S	0.835	0.12
90_V	139_T	0.831	0.12
40_H	178_I	0.829	0.12
130_M	178_I	0.828	0.12
1_M	8_S	0.821	0.12
4_Y	128_N	0.820	0.12
42_I	124_T	0.820	0.12
138_K	184_Q	0.811	0.12
84_L	108_H	0.810	0.12
52_I	177_E	0.803	0.12
30_S	179_I	0.802	0.12
32_I	125_N	0.800	0.12
95_T	183_K	0.799	0.12
54_V	65_G	0.797	0.12
29_R	164_W	0.791	0.12
54_V	170_E	0.789	0.12
90_V	150_K	0.784	0.12
125_N	172_T	0.782	0.12
84_L	94_D	0.779	0.12
34_H	93_D	0.779	0.12
63_A	113_Q	0.778	0.12
84_L	172_T	0.777	0.12
22_M	184_Q	0.775	0.12
98_E	102_R	0.770	0.12
1_M	101_L	0.760	0.11
20_A	97_T	0.756	0.11
24_A	101_L	0.745	0.11
150_K	177_E	0.744	0.11
112_A	134_Y	0.742	0.11
48_F	184_Q	0.738	0.11
76_L	83_I	0.731	0.11
8_S	13_I	0.729	0.11
66_Q	78_K	0.724	0.11
32_I	118_R	0.721	0.11
84_L	179_I	0.719	0.11
108_H	183_K	0.716	0.11
112_A	132_I	0.716	0.11
54_V	136_S	0.715	0.11
97_T	125_N	0.715	0.11
122_L	133_L	0.714	0.11
78_K	171_K	0.714	0.11
125_N	184_Q	0.713	0.11
127_V	144_E	0.713	0.11
19_K	76_L	0.712	0.11
118_R	152_T	0.711	0.11
163_K	172_T	0.711	0.11
84_L	114_S	0.705	0.11
24_A	184_Q	0.701	0.11
34_H	171_K	0.699	0.11
153_Y	158_T	0.699	0.11
163_K	171_K	0.696	0.11
39_K	182_E	0.696	0.11
13_I	39_K	0.695	0.11
136_S	144_E	0.694	0.11
180_D	184_Q	0.690	0.11
26_L	97_T	0.681	0.10
18_S	121_S	0.677	0.10
26_L	142_E	0.676	0.10
119_R	176_L	0.676	0.10
44_M	152_T	0.675	0.10
9_E	99_K	0.674	0.10
46_A	102_R	0.673	0.10
84_L	91_D	0.668	0.10
79_K	97_T	0.668	0.10
80_N	136_S	0.666	0.10
79_K	175_V	0.660	0.10
24_A	155_N	0.659	0.10
31_D	49_D	0.658	0.10
8_S	167_E	0.656	0.10
123_A	169_Y	0.655	0.10
4_Y	140_E	0.652	0.10
49_D	90_V	0.652	0.10
24_A	173_D	0.649	0.10
110_K	167_E	0.644	0.10
154_E	173_D	0.642	0.10
138_K	182_E	0.639	0.10
133_L	169_Y	0.639	0.10
112_A	156_I	0.637	0.10
8_S	134_Y	0.633	0.10
31_D	125_N	0.615	0.10
160_K	164_W	0.614	0.10
118_R	182_E	0.612	0.10
98_E	170_E	0.610	0.10
24_A	145_I	0.607	0.10
111_H	116_G	0.607	0.10
75_K	110_K	0.605	0.10
114_S	172_T	0.603	0.10
44_M	92_E	0.601	0.10
32_I	61_K	0.600	0.10
71_K	154_E	0.594	0.09
66_Q	75_K	0.593	0.09
24_A	50_S	0.592	0.09
60_S	99_K	0.592	0.09
142_E	169_Y	0.592	0.09
131_E	169_Y	0.591	0.09
138_K	173_D	0.589	0.09
97_T	164_W	0.586	0.09
70_G	184_Q	0.579	0.09
108_H	145_I	0.574	0.09
167_E	184_Q	0.573	0.09
22_M	146_L	0.572	0.09
30_S	183_K	0.571	0.09
144_E	184_Q	0.571	0.09
124_T	153_Y	0.569	0.09
82_P	131_E	0.569	0.09
13_I	21_H	0.567	0.09
90_V	129_K	0.567	0.09
73_I	184_Q	0.565	0.09
113_Q	182_E	0.562	0.09
28_E	139_T	0.561	0.09
6_K	161_D	0.558	0.09
113_Q	179_I	0.557	0.09
46_A	70_G	0.557	0.09
138_K	174_E	0.556	0.09
19_K	41_H	0.556	0.09
72_L	106_R	0.554	0.09
80_N	182_E	0.554	0.09
39_K	181_E	0.552	0.09
42_I	137_P	0.551	0.09
5_E	134_Y	0.550	0.09
2_N	8_S	0.550	0.09
106_R	113_Q	0.549	0.09
131_E	156_I	0.548	0.09
78_K	118_R	0.543	0.09
49_D	105_Q	0.538	0.09
121_S	158_T	0.538	0.09
138_K	167_E	0.537	0.09
2_N	19_K	0.533	0.09
136_S	171_K	0.533	0.09
29_R	63_A	0.530	0.09
60_S	153_Y	0.529	0.09
81_K	175_V	0.523	0.09
138_K	181_E	0.522	0.09
93_D	155_N	0.521	0.09
121_S	133_L	0.520	0.09
161_D	169_Y	0.519	0.09
29_R	48_F	0.516	0.09
52_I	171_K	0.515	0.09
68_L	164_W	0.511	0.09
92_E	116_G	0.510	0.09
48_F	138_K	0.509	0.09
129_K	138_K	0.507	0.09
130_M	184_Q	0.506	0.09
32_I	154_E	0.504	0.09
41_H	158_T	0.503	0.09
94_D	140_E	0.500	0.08

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3ey5A	1	0.8125	99	0.873	Contact Map
1sqhA	1	0.6146	98.4	0.9	Contact Map
1s3zA	2	0.5885	98.3	0.902	Contact Map
3s6fA	2	0.5885	98.2	0.903	Contact Map
1n71A	4	0.6823	98.2	0.903	Contact Map
3i9sA	4	0.6562	98.2	0.904	Contact Map
3s6kA	3	0.6823	98.2	0.905	Contact Map
4evyA	2	0.5938	98.1	0.906	Contact Map
2qecA	2	0.6615	98.1	0.907	Contact Map
2o28A	2	0.5938	98.1	0.907	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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