YJAZ - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YJAZ - Uncharacterized protein YjaZ

UniProt:	O31596	Sequences: MSVEQTYSWLRKAGSIDDLAHYIIPLFSGAEKKNWKGILGHLQHHGMFKNIKEGIQTVSKLKEKGFYGHIQKEEQYLKNKWQGPDVPIVTLPVDERNRRIRLEFGSKSGLAFQDKMFLFLSSDLDFGSVSALMTHEYHHVCRLGHLTKEEKDVTLLDTIIMEGLAEYAVYERFGRSQTAEWTTWYTPEQLQALYEKKIAPHRDIKRDNRLFPQLLFGKGYQPKMLGYAVGFNIVKKYLTASKASTADGLSIPAETFLDAML	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	261 (240)
Sequences:	336 (260)
Seq/√Len:	16.8

BACSU - YJAZ YJFC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
65_G	68_G	3.894	1.00
111_A	140_V	3.564	1.00
157_D	253_A	3.317	0.99
164_L	174_G	3.091	0.99
167_Y	235_K	2.962	0.98
142_R	164_L	2.889	0.98
138_H	165_A	2.789	0.98
77_L	134_T	2.690	0.97
134_T	172_R	2.674	0.97
23_I	27_F	2.408	0.94
23_I	26_L	2.322	0.93
71_Q	75_Q	2.272	0.92
39_L	47_M	2.268	0.92
142_R	174_G	2.245	0.92
166_E	169_V	2.219	0.91
19_L	23_I	2.150	0.90
77_L	248_G	2.112	0.89
26_L	89_V	2.012	0.87
153_V	206_R	2.011	0.87
155_L	204_I	2.001	0.86
252_P	255_T	1.916	0.84
46_G	50_N	1.910	0.84
37_G	40_G	1.900	0.83
116_M	138_H	1.855	0.82
92_P	241_S	1.850	0.82
40_G	47_M	1.828	0.81
42_L	185_Y	1.754	0.78
88_I	118_L	1.750	0.78
58_V	90_T	1.745	0.77
120_L	129_V	1.725	0.77
83_G	169_V	1.715	0.76
237_Y	251_I	1.672	0.74
189_Q	244_S	1.633	0.73
131_A	215_L	1.577	0.70
166_E	224_M	1.559	0.69
210_L	256_F	1.548	0.68
201_H	254_E	1.537	0.68
170_Y	175_R	1.521	0.67
192_A	255_T	1.516	0.67
143_L	157_D	1.514	0.67
122_S	228_A	1.505	0.66
179_A	182_T	1.503	0.66
38_I	41_H	1.500	0.66
106_S	109_G	1.491	0.65
73_E	77_L	1.489	0.65
142_R	226_G	1.472	0.64
163_G	217_G	1.450	0.63
136_E	163_G	1.450	0.63
163_G	227_Y	1.450	0.63
136_E	139_H	1.450	0.63
135_H	227_Y	1.450	0.63
217_G	227_Y	1.450	0.63
139_H	227_Y	1.450	0.63
139_H	163_G	1.450	0.63
136_E	217_G	1.450	0.63
135_H	139_H	1.450	0.63
139_H	217_G	1.450	0.63
135_H	217_G	1.450	0.63
135_H	163_G	1.450	0.63
136_E	227_Y	1.450	0.63
39_L	44_H	1.398	0.60
251_I	255_T	1.394	0.60
198_I	214_L	1.394	0.60
111_A	116_M	1.389	0.60
70_I	129_V	1.384	0.59
215_L	226_G	1.382	0.59
134_T	173_F	1.359	0.58
92_P	115_K	1.345	0.57
66_F	90_T	1.344	0.57
66_F	70_I	1.339	0.57
25_P	61_L	1.311	0.55
112_F	182_T	1.308	0.55
83_G	119_F	1.299	0.54
20_A	27_F	1.297	0.54
39_L	48_F	1.296	0.54
52_K	79_N	1.293	0.54
105_G	204_I	1.286	0.54
81_W	138_H	1.279	0.53
16_I	30_A	1.277	0.53
186_T	194_Y	1.277	0.53
17_D	20_A	1.253	0.52
235_K	239_T	1.242	0.51
58_V	186_T	1.235	0.51
164_L	226_G	1.230	0.50
97_N	184_W	1.219	0.50
226_G	234_V	1.218	0.50
81_W	141_C	1.207	0.49
16_I	20_A	1.205	0.49
203_D	258_D	1.189	0.48
77_L	169_V	1.185	0.48
157_D	161_M	1.182	0.47
70_I	109_G	1.178	0.47
192_A	196_K	1.169	0.47
163_G	222_P	1.164	0.46
222_P	227_Y	1.164	0.46
217_G	222_P	1.164	0.46
136_E	222_P	1.164	0.46
135_H	222_P	1.164	0.46
139_H	222_P	1.164	0.46
23_I	29_G	1.146	0.45
159_I	232_N	1.141	0.45
158_T	211_F	1.137	0.45
161_M	214_L	1.132	0.45
37_G	42_L	1.132	0.45
130_S	134_T	1.119	0.44
94_D	106_S	1.102	0.43
107_K	137_Y	1.101	0.43
93_V	228_A	1.099	0.43
143_L	161_M	1.091	0.42
16_I	22_Y	1.082	0.42
156_L	215_L	1.076	0.41
22_Y	27_F	1.058	0.40
77_L	130_S	1.054	0.40
136_E	162_E	1.050	0.40
162_E	227_Y	1.050	0.40
135_H	162_E	1.050	0.40
162_E	217_G	1.050	0.40
139_H	162_E	1.050	0.40
129_V	159_I	1.049	0.40
53_E	58_V	1.048	0.40
27_F	116_M	1.048	0.40
111_A	218_K	1.044	0.39
81_W	168_A	1.043	0.39
87_P	169_V	1.022	0.38
237_Y	243_A	1.020	0.38
87_P	168_A	1.013	0.38
68_G	203_D	1.013	0.38
239_T	250_S	1.009	0.37
140_V	143_L	0.980	0.36
152_D	205_K	0.975	0.36
144_G	174_G	0.974	0.36
87_P	203_D	0.963	0.35
107_K	168_A	0.956	0.35
110_L	249_L	0.951	0.34
38_I	140_V	0.949	0.34
148_K	224_M	0.938	0.34
73_E	173_F	0.924	0.33
122_S	160_I	0.920	0.33
124_L	175_R	0.917	0.32
180_E	221_Q	0.916	0.32
140_V	225_L	0.916	0.32
18_D	30_A	0.914	0.32
117_F	256_F	0.910	0.32
193_L	225_L	0.908	0.32
170_Y	236_K	0.906	0.32
238_L	243_A	0.906	0.32
245_T	248_G	0.905	0.32
191_Q	247_D	0.904	0.32
79_N	243_A	0.897	0.31
42_L	46_G	0.896	0.31
59_S	63_E	0.896	0.31
16_I	39_L	0.895	0.31
24_I	44_H	0.894	0.31
139_H	230_G	0.894	0.31
136_E	230_G	0.894	0.31
135_H	230_G	0.894	0.31
163_G	230_G	0.894	0.31
227_Y	230_G	0.894	0.31
217_G	230_G	0.894	0.31
185_Y	224_M	0.890	0.31
48_F	206_R	0.889	0.31
69_H	130_S	0.888	0.31
238_L	248_G	0.887	0.31
88_I	92_P	0.880	0.31
245_T	249_L	0.877	0.30
204_I	239_T	0.876	0.30
20_A	23_I	0.861	0.30
85_D	186_T	0.859	0.30
146_L	157_D	0.857	0.29
75_Q	255_T	0.855	0.29
141_C	249_L	0.854	0.29
66_F	118_L	0.854	0.29
176_S	229_V	0.853	0.29
195_E	233_I	0.853	0.29
157_D	212_P	0.852	0.29
84_P	249_L	0.847	0.29
105_G	206_R	0.847	0.29
119_F	166_E	0.847	0.29
46_G	118_L	0.846	0.29
198_I	229_V	0.845	0.29
55_I	59_S	0.840	0.29
72_K	233_I	0.837	0.28
142_R	169_V	0.835	0.28
73_E	169_V	0.833	0.28
166_E	231_F	0.833	0.28
133_M	246_A	0.831	0.28
152_D	254_E	0.829	0.28
198_I	201_H	0.826	0.28
105_G	194_Y	0.817	0.28
134_T	150_E	0.813	0.27
70_I	138_H	0.813	0.27
210_L	221_Q	0.807	0.27
150_E	172_R	0.803	0.27
127_G	177_Q	0.802	0.27
150_E	173_F	0.801	0.27
36_K	239_T	0.795	0.26
138_H	216_F	0.792	0.26
139_H	165_A	0.791	0.26
165_A	217_G	0.791	0.26
136_E	165_A	0.791	0.26
165_A	227_Y	0.791	0.26
135_H	165_A	0.791	0.26
93_V	157_D	0.790	0.26
53_E	65_G	0.790	0.26
96_R	232_N	0.789	0.26
77_L	168_A	0.786	0.26
164_L	179_A	0.783	0.26
111_A	224_M	0.777	0.26
75_Q	258_D	0.776	0.26
169_V	181_W	0.767	0.25
174_G	226_G	0.766	0.25
125_D	215_L	0.765	0.25
37_G	257_L	0.757	0.25
189_Q	252_P	0.753	0.25
116_M	226_G	0.753	0.25
138_H	212_P	0.753	0.25
97_N	106_S	0.750	0.24
95_E	122_S	0.744	0.24
86_V	194_Y	0.740	0.24
119_F	137_Y	0.739	0.24
149_E	152_D	0.738	0.24
79_N	191_Q	0.737	0.24
164_L	248_G	0.731	0.24
176_S	243_A	0.731	0.24
80_K	172_R	0.730	0.24
103_E	196_K	0.730	0.24
201_H	233_I	0.729	0.24
51_I	206_R	0.729	0.24
91_L	215_L	0.723	0.23
21_H	39_L	0.721	0.23
59_S	191_Q	0.721	0.23
59_S	65_G	0.720	0.23
234_V	256_F	0.719	0.23
15_S	251_I	0.718	0.23
158_T	215_L	0.717	0.23
78_K	204_I	0.713	0.23
85_D	243_A	0.712	0.23
216_F	231_F	0.708	0.23
201_H	206_R	0.705	0.23
16_I	19_L	0.704	0.22
203_D	255_T	0.701	0.22
68_G	239_T	0.700	0.22
41_H	180_E	0.700	0.22
97_N	256_F	0.699	0.22
244_S	247_D	0.699	0.22
142_R	166_E	0.696	0.22
155_L	201_H	0.694	0.22
98_R	244_S	0.693	0.22
46_G	83_G	0.689	0.22
76_Y	187_P	0.683	0.22
88_I	178_T	0.683	0.22
47_M	50_N	0.682	0.22
203_D	254_E	0.681	0.22
166_E	185_Y	0.679	0.21
80_K	203_D	0.678	0.21
59_S	160_I	0.678	0.21
119_F	185_Y	0.674	0.21
25_P	202_R	0.670	0.21
214_L	221_Q	0.669	0.21
61_L	90_T	0.669	0.21
67_Y	164_L	0.662	0.21
154_T	205_K	0.658	0.21
161_M	181_W	0.657	0.21
207_D	211_F	0.656	0.21
121_S	245_T	0.652	0.20
128_S	211_F	0.652	0.20
70_I	239_T	0.650	0.20
93_V	100_I	0.649	0.20
88_I	138_H	0.649	0.20
46_G	84_P	0.647	0.20
75_Q	160_I	0.646	0.20
18_D	22_Y	0.644	0.20
132_L	160_I	0.642	0.20
72_K	79_N	0.639	0.20
138_H	219_G	0.639	0.20
16_I	48_F	0.638	0.20
55_I	254_E	0.638	0.20
16_I	67_Y	0.637	0.20
107_K	131_A	0.637	0.20
120_L	190_L	0.636	0.20
141_C	168_A	0.635	0.20
53_E	64_K	0.629	0.20
42_L	47_M	0.629	0.20
77_L	150_E	0.628	0.20
140_V	148_K	0.625	0.19
58_V	258_D	0.621	0.19
90_T	176_S	0.620	0.19
24_I	160_I	0.620	0.19
60_K	63_E	0.619	0.19
175_R	234_V	0.619	0.19
214_L	224_M	0.616	0.19
169_V	224_M	0.616	0.19
116_M	200_P	0.615	0.19
90_T	118_L	0.613	0.19
104_F	157_D	0.612	0.19
147_T	257_L	0.612	0.19
77_L	172_R	0.609	0.19
219_G	233_I	0.605	0.19
104_F	198_I	0.605	0.19
162_E	222_P	0.600	0.18
36_K	40_G	0.596	0.18
168_A	215_L	0.595	0.18
170_Y	231_F	0.594	0.18
61_L	66_F	0.594	0.18
160_I	230_G	0.592	0.18
53_E	203_D	0.591	0.18
110_L	118_L	0.589	0.18
159_I	215_L	0.589	0.18
90_T	117_F	0.584	0.18
108_S	256_F	0.582	0.18
192_A	222_P	0.582	0.18
59_S	76_Y	0.581	0.18
65_G	258_D	0.578	0.18
50_N	178_T	0.576	0.18
122_S	245_T	0.573	0.18
248_G	256_F	0.571	0.17
104_F	224_M	0.570	0.17
112_F	115_K	0.569	0.17
59_S	154_T	0.567	0.17
109_G	166_E	0.560	0.17
137_Y	156_L	0.558	0.17
68_G	253_A	0.556	0.17
73_E	141_C	0.556	0.17
37_G	41_H	0.555	0.17
16_I	23_I	0.555	0.17
90_T	203_D	0.555	0.17
157_D	214_L	0.554	0.17
68_G	186_T	0.553	0.17
160_I	200_P	0.552	0.17
20_A	28_S	0.550	0.17
81_W	92_P	0.549	0.17
169_V	174_G	0.536	0.16
213_Q	218_K	0.536	0.16
120_L	238_L	0.535	0.16
42_L	50_N	0.535	0.16
206_R	210_L	0.532	0.16
70_I	74_E	0.530	0.16
41_H	45_H	0.528	0.16
39_L	49_K	0.528	0.16
131_A	142_R	0.528	0.16
105_G	256_F	0.528	0.16
18_D	25_P	0.527	0.16
156_L	194_Y	0.527	0.16
214_L	231_F	0.524	0.16
193_L	222_P	0.524	0.16
56_Q	71_Q	0.523	0.16
81_W	174_G	0.522	0.16
153_V	159_I	0.518	0.16
160_I	176_S	0.517	0.16
79_N	252_P	0.516	0.16
83_G	176_S	0.514	0.16
18_D	21_H	0.512	0.16
27_F	30_A	0.509	0.15
21_H	105_G	0.505	0.15
72_K	75_Q	0.505	0.15
141_C	252_P	0.504	0.15
125_D	183_T	0.504	0.15
23_I	31_E	0.503	0.15
169_V	177_Q	0.502	0.15
60_K	78_K	0.500	0.15

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2y3uA	1	0.9004	96.8	0.91	Contact Map
4arfA	2	0.8046	96.3	0.915	Contact Map
4ar9A	1	0.8582	96.3	0.915	Contact Map
4areA	1	0.9042	96.1	0.917	Contact Map
3cqbA	4	0.3946	91.7	0.932	Contact Map
4gaaA	2	0.8851	69.3	0.948	Contact Map
4fgmA	4	0.9004	54.8	0.953	Contact Map
1z5hA	3	0.8889	52.4	0.953	Contact Map
4wz9A	2	0.8889	52.1	0.953	Contact Map
4x2uA	1	0.8966	51.3	0.953	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0089 seconds.