GREMLIN Database
RS14B - Alternate 30S ribosomal protein S14
UniProt: O31587 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 89 (89)
Sequences: 1631 (633)
Seq/√Len: 67.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
8_A11_L3.3941.00
49_H59_R3.3781.00
52_C55_T3.0411.00
50_N61_Y2.9581.00
10_E14_Q2.9331.00
17_V48_L2.4251.00
62_M72_F2.4101.00
11_L14_Q2.2631.00
16_L43_S2.1941.00
10_E48_L2.0731.00
26_E30_K2.0091.00
4_K7_V1.9641.00
39_L43_S1.9521.00
20_Y43_S1.8521.00
72_F84_V1.8291.00
76_A84_V1.8021.00
81_I84_V1.7231.00
14_Q48_L1.7211.00
4_K8_A1.6520.99
53_M66_K1.6110.99
74_E78_K1.6040.99
71_A74_E1.5940.99
21_A25_R1.5800.99
65_F84_V1.5250.99
29_E32_D1.5160.99
55_T71_A1.5070.99
23_I26_E1.4290.98
52_C71_A1.4170.98
34_E38_K1.2780.96
6_K9_K1.2380.96
75_L80_Q1.2140.95
18_E21_A1.1670.94
10_E13_R1.1530.94
41_R46_G1.1490.93
25_R29_E1.1320.93
22_G26_E1.0900.92
9_K12_K1.0880.91
35_A39_L1.0790.91
32_D35_A1.0620.90
14_Q18_E1.0600.90
10_E49_H1.0520.90
6_K10_E1.0390.90
6_K58_P0.9810.87
13_R16_L0.9530.85
15_Q19_Q0.9470.85
77_H81_I0.9470.85
24_R43_S0.9320.84
22_G25_R0.9220.83
20_Y39_L0.9190.83
67_M71_A0.9070.82
16_L44_A0.9000.82
39_L45_P0.8490.78
9_K13_R0.8090.74
49_H58_P0.8010.73
27_L82_P0.7970.73
75_L78_K0.7840.72
55_T68_S0.7770.71
20_Y40_P0.7720.71
30_K33_Y0.7720.71
13_R42_D0.7680.70
55_T74_E0.7670.70
54_V59_R0.7660.70
33_Y43_S0.7340.67
14_Q50_N0.7310.66
59_R64_K0.7290.66
3_K6_K0.7250.66
10_E17_V0.7250.66
28_K36_L0.7230.66
28_K31_G0.7170.65
30_K35_A0.7120.64
77_H80_Q0.7090.64
49_H61_Y0.6950.62
40_P43_S0.6870.62
54_V67_M0.6870.62
50_N63_R0.6810.61
65_F72_F0.6710.60
18_E22_G0.6660.59
68_S71_A0.6620.59
63_R72_F0.6620.59
76_A81_I0.6580.58
28_K32_D0.6540.58
35_A42_D0.6480.57
35_A38_K0.6440.57
38_K45_P0.6420.56
34_E37_S0.6410.56
50_N60_A0.6410.56
59_R77_H0.6410.56
34_E81_I0.6390.56
23_I30_K0.6380.56
28_K33_Y0.6380.56
31_G36_L0.6370.56
6_K77_H0.6320.55
9_K37_S0.6310.55
31_G34_E0.6250.54
72_F77_H0.6250.54
71_A75_L0.6230.54
72_F81_I0.6130.53
57_R70_I0.6070.52
67_M75_L0.6070.52
37_S62_M0.6060.52
54_V71_A0.6010.52
27_L86_K0.6000.51
24_R44_A0.5980.51
10_E53_M0.5920.51
77_H87_A0.5870.50
13_R41_R0.5860.50
33_Y37_S0.5820.49
8_A15_Q0.5750.48
49_H60_A0.5740.48
64_K75_L0.5650.47
12_K16_L0.5600.47
31_G37_S0.5590.47
14_Q59_R0.5570.46
71_A77_H0.5480.45
60_A71_A0.5460.45
1_M5_S0.5450.45
31_G35_A0.5440.45
51_R58_P0.5420.45
11_L63_R0.5420.45
23_I38_K0.5380.44
37_S67_M0.5380.44
37_S46_G0.5380.44
33_Y62_M0.5350.44
3_K78_K0.5290.43
60_A82_P0.5240.42
56_G79_G0.5200.42
39_L69_R0.5110.41
4_K68_S0.5110.41
21_A29_E0.5050.40
33_Y85_K0.5050.40
70_I74_E0.5040.40
3_K9_K0.5010.40
72_F76_A0.5010.40
50_N53_M0.5000.40
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3bbnN 1 0.9888 100 0.145 Contact Map
4tp8N 1 0.9888 100 0.175 Contact Map
5aj3N 1 0.9775 100 0.247 Contact Map
4rb5N 1 0.6742 99.9 0.439 Contact Map
4w23d 1 0.5618 99.6 0.592 Contact Map
3j60d 1 0.5169 99.6 0.604 Contact Map
4ujpe 1 0.573 99.5 0.615 Contact Map
3j7aT 1 0.5169 99.5 0.619 Contact Map
3zey8 1 0.4494 99.4 0.632 Contact Map
4bpeN 1 0.5843 99.4 0.639 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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