YFHH - BACSU - GREMLIN Contacts

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YFHH - Uncharacterized protein YfhH

UniProt:	O31576	Sequences: MEKRYSQMTPHELNTEIALLSEKARKAEQHGIINELAVLERKITMAKAYLLNPEDYSPGETYRVENTEDEFTISYLNGVFAWGYRTSSPQQEEALPISVLQEKE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	104 (99)
Sequences:	175 (123)
Seq/√Len:	12.4

BACSU - YFHH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
48_A	98_S	5.008	1.00
56_Y	73_I	4.816	1.00
52_N	55_D	3.569	0.99
10_P	14_N	3.561	0.99
16_E	20_L	2.382	0.87
51_L	56_Y	2.033	0.77
51_L	97_I	1.928	0.73
44_T	99_V	1.879	0.71
17_I	34_N	1.865	0.70
51_L	55_D	1.853	0.70
21_S	25_R	1.839	0.69
53_P	97_I	1.821	0.68
48_A	76_L	1.784	0.67
64_V	95_L	1.713	0.64
39_L	99_V	1.703	0.63
5_Y	20_L	1.647	0.60
73_I	81_A	1.588	0.57
21_S	43_I	1.494	0.53
85_R	93_E	1.481	0.52
34_N	38_V	1.443	0.50
10_P	48_A	1.353	0.46
2_E	59_G	1.339	0.45
5_Y	42_K	1.319	0.44
70_E	86_T	1.299	0.43
3_K	12_E	1.296	0.43
40_E	97_I	1.265	0.41
11_H	14_N	1.262	0.41
23_K	39_L	1.237	0.40
40_E	98_S	1.220	0.39
23_K	72_T	1.205	0.38
12_E	25_R	1.202	0.38
5_Y	16_E	1.194	0.38
70_E	88_S	1.193	0.38
55_D	98_S	1.181	0.37
23_K	85_R	1.157	0.36
61_T	88_S	1.134	0.35
36_L	84_Y	1.118	0.34
25_R	39_L	1.109	0.34
7_Q	18_A	1.079	0.32
32_I	38_V	1.076	0.32
63_R	79_V	1.071	0.32
36_L	73_I	1.060	0.32
73_I	80_F	1.055	0.31
61_T	72_T	1.052	0.31
21_S	47_K	1.047	0.31
57_S	60_E	1.038	0.31
63_R	77_N	1.036	0.30
74_S	87_S	1.018	0.30
19_L	54_E	1.015	0.30
3_K	56_Y	0.983	0.28
3_K	8_M	0.967	0.28
43_I	50_L	0.967	0.28
3_K	10_P	0.965	0.28
87_S	90_Q	0.960	0.27
26_K	31_G	0.957	0.27
7_Q	10_P	0.955	0.27
67_T	99_V	0.932	0.26
43_I	47_K	0.924	0.26
14_N	60_E	0.918	0.26
18_A	73_I	0.917	0.26
33_I	68_E	0.909	0.25
4_R	33_I	0.908	0.25
3_K	7_Q	0.907	0.25
39_L	70_E	0.907	0.25
15_T	19_L	0.885	0.24
61_T	70_E	0.880	0.24
65_E	101_Q	0.864	0.24
40_E	48_A	0.860	0.23
4_R	99_V	0.859	0.23
61_T	74_S	0.848	0.23
64_V	85_R	0.847	0.23
15_T	68_E	0.842	0.23
42_K	95_L	0.838	0.23
21_S	32_I	0.830	0.22
47_K	64_V	0.824	0.22
11_H	50_L	0.817	0.22
36_L	92_E	0.798	0.21
26_K	35_E	0.791	0.21
47_K	65_E	0.782	0.21
61_T	91_Q	0.782	0.21
31_G	80_F	0.761	0.20
47_K	77_N	0.753	0.20
7_Q	86_T	0.750	0.20
22_E	28_E	0.739	0.19
2_E	12_E	0.733	0.19
7_Q	12_E	0.731	0.19
48_A	97_I	0.723	0.19
22_E	36_L	0.718	0.19
11_H	101_Q	0.707	0.18
30_H	99_V	0.707	0.18
61_T	86_T	0.705	0.18
61_T	90_Q	0.693	0.18
52_N	87_S	0.692	0.18
40_E	53_P	0.691	0.18
30_H	79_V	0.681	0.18
24_A	45_M	0.676	0.17
28_E	41_R	0.672	0.17
21_S	51_L	0.668	0.17
27_A	98_S	0.664	0.17
63_R	68_E	0.663	0.17
54_E	57_S	0.647	0.17
45_M	48_A	0.646	0.17
6_S	53_P	0.646	0.17
6_S	56_Y	0.639	0.16
66_N	69_D	0.639	0.16
24_A	80_F	0.636	0.16
5_Y	9_T	0.634	0.16
72_T	86_T	0.631	0.16
6_S	71_F	0.623	0.16
24_A	29_Q	0.620	0.16
23_K	84_Y	0.613	0.16
72_T	79_V	0.612	0.16
44_T	47_K	0.610	0.16
43_I	88_S	0.609	0.16
58_P	65_E	0.606	0.15
75_Y	80_F	0.606	0.15
77_N	98_S	0.606	0.15
8_M	77_N	0.593	0.15
19_L	87_S	0.586	0.15
45_M	80_F	0.582	0.15
4_R	49_Y	0.580	0.15
4_R	77_N	0.579	0.15
44_T	101_Q	0.573	0.15
86_T	90_Q	0.573	0.15
18_A	26_K	0.568	0.14
27_A	85_R	0.562	0.14
26_K	29_Q	0.557	0.14
39_L	69_D	0.556	0.14
10_P	38_V	0.551	0.14
14_N	44_T	0.547	0.14
67_T	84_Y	0.546	0.14
86_T	92_E	0.544	0.14
38_V	50_L	0.538	0.14
5_Y	33_I	0.536	0.14
32_I	76_L	0.534	0.14
57_S	73_I	0.530	0.14
43_I	70_E	0.530	0.14
61_T	101_Q	0.529	0.13
3_K	51_L	0.527	0.13
13_L	54_E	0.515	0.13
58_P	76_L	0.515	0.13
84_Y	92_E	0.515	0.13
42_K	66_N	0.512	0.13
53_P	71_F	0.503	0.13
29_Q	41_R	0.503	0.13
37_A	40_E	0.502	0.13
8_M	88_S	0.501	0.13
22_E	98_S	0.500	0.13

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1sf9A	1	1	100	0.051	Contact Map
2yxyA	1	0.9904	100	0.064	Contact Map
2p4vA	1	0.9712	45.9	0.925	Contact Map
1e52A	2	0.5192	37.5	0.929	Contact Map
2d7dA	2	0.3654	30.7	0.932	Contact Map
1grjA	1	0.9423	20.8	0.937	Contact Map
2f23A	1	0.9423	12.7	0.943	Contact Map
3mq7A	6	0.4423	9.3	0.947	Contact Map
4bpe4	1	0.4808	8.8	0.947	Contact Map
4qccA	6	0.2019	7.3	0.949	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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