YETF - BACSU - GREMLIN Contacts

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YETF - UPF0702 transmembrane protein YetF

UniProt:	O31533	Sequences: MGNYLSVAVELVCGLGILFIILKLLGKTQFSQITPFDFISALILGELVGNAVYDHEIKIKEIIFASLLWGVLIYIIEFITQKMKSSRKFLEGEPNIVIRKGELQYKVMKKNKIDINQLQSLLRQAGSFSIQEVEYAILETNGMVSVLPKSDFDKPTNKDLQIPSKSVSLPITLIIDGEIVRDNLKEAGVDEQWLKQELKKKNIDKTEDVLFAEWHKNKPLYTVTYEQSRST	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	231 (221)
Sequences:	1708 (1378)
Seq/√Len:	92.7

BACSU - YETF YDFS YKJA YRBG YDFR

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
197_E	200_K	7.203	1.00
181_R	191_E	6.951	1.00
132_E	152_F	4.143	1.00
95_N	107_V	3.694	1.00
127_S	148_P	3.435	1.00
203_I	209_V	3.397	1.00
155_P	160_L	3.388	1.00
86_S	90_L	3.120	1.00
27_K	95_N	3.078	1.00
88_K	93_E	2.801	1.00
129_S	132_E	2.696	1.00
95_N	111_N	2.457	1.00
104_Q	107_V	2.413	1.00
152_F	158_K	2.386	1.00
203_I	224_T	2.284	1.00
179_I	206_T	2.251	1.00
189_V	193_W	2.237	1.00
99_R	104_Q	2.226	1.00
17_I	63_I	2.175	1.00
179_I	194_L	2.169	1.00
122_L	133_V	2.149	1.00
124_Q	143_M	2.126	1.00
174_I	212_A	2.060	1.00
127_S	133_V	2.015	1.00
157_N	164_S	1.993	1.00
21_I	70_G	1.934	1.00
8_A	64_F	1.914	1.00
100_K	134_E	1.894	1.00
209_V	212_A	1.880	1.00
215_H	219_P	1.855	1.00
128_F	147_L	1.813	1.00
122_L	146_V	1.783	1.00
103_L	118_L	1.737	1.00
191_E	195_K	1.699	1.00
132_E	148_P	1.698	1.00
38_F	41_A	1.657	1.00
192_Q	196_Q	1.655	1.00
198_L	203_I	1.643	1.00
113_I	121_L	1.634	1.00
151_D	158_K	1.621	1.00
98_I	130_I	1.601	1.00
98_I	118_L	1.586	1.00
157_N	162_I	1.580	1.00
155_P	162_I	1.566	1.00
173_L	214_W	1.552	1.00
208_D	224_T	1.542	1.00
133_V	146_V	1.509	1.00
179_I	193_W	1.508	1.00
179_I	195_K	1.482	1.00
29_Q	41_A	1.479	1.00
97_V	138_L	1.473	1.00
184_L	194_L	1.473	1.00
184_L	193_W	1.450	1.00
198_L	209_V	1.429	0.99
201_K	222_T	1.405	0.99
179_I	184_L	1.371	0.99
133_V	136_A	1.353	0.99
87_R	116_N	1.332	0.99
105_Y	210_L	1.324	0.99
38_F	43_I	1.306	0.99
14_G	52_V	1.296	0.99
4_Y	64_F	1.293	0.99
134_E	149_K	1.278	0.99
84_K	88_K	1.275	0.99
198_L	202_N	1.275	0.99
8_A	68_L	1.268	0.99
212_A	222_T	1.232	0.98
151_D	166_S	1.229	0.98
79_I	86_S	1.213	0.98
124_Q	141_N	1.208	0.98
129_S	213_E	1.207	0.98
107_V	110_K	1.184	0.98
171_I	183_N	1.184	0.98
193_W	197_E	1.183	0.98
174_I	209_V	1.145	0.97
109_K	158_K	1.136	0.97
87_R	114_D	1.130	0.97
105_Y	223_V	1.116	0.97
14_G	69_W	1.103	0.97
115_I	210_L	1.097	0.97
199_K	204_D	1.089	0.97
43_I	46_E	1.088	0.96
204_D	208_D	1.081	0.96
105_Y	225_Y	1.072	0.96
148_P	153_D	1.071	0.96
22_L	43_I	1.057	0.96
103_L	130_I	1.055	0.96
108_M	118_L	1.052	0.96
184_L	189_V	1.048	0.96
150_S	157_N	1.048	0.96
153_D	167_V	1.043	0.96
13_C	59_I	1.041	0.95
127_S	146_V	1.040	0.95
20_I	163_P	1.022	0.95
174_I	206_T	1.016	0.95
76_I	90_L	1.015	0.95
172_T	175_I	1.014	0.95
11_L	68_L	1.014	0.95
54_D	57_I	1.011	0.95
197_E	201_K	1.008	0.95
15_L	72_L	1.007	0.95
64_F	68_L	0.992	0.94
102_E	223_V	0.972	0.93
111_N	138_L	0.958	0.93
159_D	162_I	0.955	0.93
97_V	108_M	0.947	0.93
40_S	69_W	0.938	0.92
156_T	160_L	0.933	0.92
121_L	144_V	0.932	0.92
41_A	45_G	0.927	0.92
126_G	148_P	0.923	0.92
75_I	79_I	0.922	0.92
7_V	61_E	0.921	0.92
154_K	157_N	0.920	0.91
98_I	136_A	0.918	0.91
11_L	53_Y	0.917	0.91
52_V	69_W	0.912	0.91
97_V	113_I	0.903	0.91
19_F	36_F	0.899	0.91
19_F	45_G	0.894	0.90
29_Q	38_F	0.893	0.90
190_D	193_W	0.889	0.90
50_N	53_Y	0.887	0.90
81_Q	114_D	0.886	0.90
35_P	43_I	0.883	0.90
113_I	117_Q	0.880	0.90
155_P	159_D	0.879	0.90
94_P	135_Y	0.864	0.89
150_S	153_D	0.863	0.89
13_C	17_I	0.861	0.89
23_K	112_K	0.860	0.88
94_P	137_I	0.857	0.88
172_T	211_F	0.854	0.88
192_Q	195_K	0.853	0.88
115_I	175_I	0.851	0.88
63_I	67_L	0.847	0.88
182_D	185_K	0.827	0.86
212_A	220_L	0.825	0.86
173_L	220_L	0.818	0.86
15_L	76_I	0.817	0.86
11_L	73_I	0.814	0.86
12_V	72_L	0.807	0.85
5_L	9_V	0.805	0.85
156_T	162_I	0.800	0.85
181_R	185_K	0.799	0.85
40_S	73_I	0.796	0.84
198_L	220_L	0.795	0.84
160_L	163_P	0.784	0.83
46_E	50_N	0.781	0.83
16_G	72_L	0.781	0.83
30_F	33_I	0.781	0.83
138_L	144_V	0.781	0.83
173_L	194_L	0.776	0.83
113_I	138_L	0.775	0.83
195_K	199_K	0.768	0.82
22_L	41_A	0.767	0.82
20_I	89_F	0.764	0.82
198_L	206_T	0.763	0.82
85_S	88_K	0.762	0.82
125_A	143_M	0.761	0.82
214_W	219_P	0.761	0.82
47_L	66_S	0.760	0.81
97_V	124_Q	0.760	0.81
48_V	58_K	0.758	0.81
52_V	73_I	0.758	0.81
180_V	183_N	0.754	0.81
35_P	41_A	0.747	0.80
46_E	53_Y	0.745	0.80
51_A	62_I	0.738	0.80
96_I	137_I	0.736	0.79
32_Q	42_L	0.735	0.79
25_L	77_E	0.730	0.79
151_D	164_S	0.729	0.79
25_L	74_Y	0.728	0.79
50_N	54_D	0.728	0.79
83_M	86_S	0.722	0.78
34_T	37_D	0.722	0.78
198_L	222_T	0.722	0.78
120_S	140_T	0.720	0.78
148_P	154_K	0.719	0.78
27_K	111_N	0.718	0.78
70_G	74_Y	0.716	0.77
22_L	38_F	0.715	0.77
23_K	39_I	0.711	0.77
25_L	40_S	0.709	0.77
97_V	118_L	0.706	0.76
17_I	64_F	0.706	0.76
46_E	65_A	0.701	0.76
26_G	42_L	0.700	0.76
98_I	122_L	0.698	0.76
28_T	31_S	0.696	0.75
6_S	130_I	0.693	0.75
22_L	35_P	0.681	0.74
23_K	38_F	0.678	0.74
155_P	158_K	0.675	0.73
184_L	191_E	0.672	0.73
32_Q	38_F	0.667	0.72
103_L	108_M	0.664	0.72
4_Y	7_V	0.662	0.72
31_S	35_P	0.661	0.72
37_D	111_N	0.660	0.72
21_I	66_S	0.659	0.71
29_Q	33_I	0.658	0.71
19_F	23_K	0.656	0.71
194_L	197_E	0.655	0.71
94_P	169_L	0.654	0.71
137_I	169_L	0.653	0.71
33_I	121_L	0.652	0.71
106_K	109_K	0.650	0.70
129_S	167_V	0.649	0.70
52_V	58_K	0.649	0.70
28_T	73_I	0.648	0.70
134_E	150_S	0.647	0.70
116_N	175_I	0.647	0.70
192_Q	204_D	0.646	0.70
129_S	215_H	0.646	0.70
18_L	36_F	0.644	0.70
176_D	225_Y	0.644	0.70
99_R	186_E	0.644	0.70
114_D	117_Q	0.641	0.69
39_I	92_G	0.640	0.69
15_L	23_K	0.640	0.69
195_K	206_T	0.635	0.69
35_P	40_S	0.631	0.68
40_S	46_E	0.631	0.68
201_K	220_L	0.628	0.68
91_E	117_Q	0.627	0.68
173_L	187_A	0.627	0.68
188_G	191_E	0.626	0.68
31_S	45_G	0.623	0.67
71_V	185_K	0.620	0.67
31_S	73_I	0.620	0.67
45_G	53_Y	0.620	0.67
118_L	136_A	0.620	0.67
14_G	49_G	0.620	0.67
188_G	193_W	0.618	0.67
45_G	73_I	0.615	0.66
7_V	187_A	0.614	0.66
69_W	213_E	0.613	0.66
153_D	157_N	0.612	0.66
40_S	77_E	0.610	0.66
132_E	149_K	0.608	0.65
19_F	72_L	0.605	0.65
46_E	91_E	0.600	0.64
45_G	50_N	0.600	0.64
190_D	204_D	0.595	0.64
43_I	53_Y	0.595	0.64
5_L	126_G	0.595	0.64
78_F	82_K	0.594	0.63
97_V	136_A	0.593	0.63
47_L	52_V	0.592	0.63
136_A	174_I	0.592	0.63
42_L	45_G	0.591	0.63
31_S	77_E	0.591	0.63
41_A	50_N	0.591	0.63
84_K	116_N	0.590	0.63
84_K	178_E	0.590	0.63
49_G	53_Y	0.589	0.63
203_I	206_T	0.589	0.63
181_R	207_E	0.587	0.63
58_K	61_E	0.586	0.62
54_D	91_E	0.584	0.62
29_Q	37_D	0.578	0.61
20_I	218_K	0.577	0.61
19_F	90_L	0.575	0.61
4_Y	68_L	0.574	0.61
187_A	214_W	0.573	0.61
29_Q	44_L	0.573	0.61
33_I	91_E	0.572	0.61
18_L	21_I	0.572	0.61
99_R	102_E	0.569	0.60
161_Q	222_T	0.567	0.60
197_E	220_L	0.566	0.60
84_K	180_V	0.566	0.60
162_I	165_K	0.565	0.60
130_I	211_F	0.563	0.59
196_Q	202_N	0.562	0.59
38_F	50_N	0.562	0.59
80_T	86_S	0.562	0.59
71_V	186_E	0.561	0.59
33_I	113_I	0.559	0.59
78_F	112_K	0.558	0.59
44_L	49_G	0.553	0.58
49_G	52_V	0.553	0.58
96_I	148_P	0.552	0.58
115_I	211_F	0.550	0.58
54_D	77_E	0.549	0.57
70_G	121_L	0.546	0.57
75_I	192_Q	0.545	0.57
79_I	185_K	0.542	0.57
14_G	53_Y	0.542	0.57
185_K	199_K	0.541	0.56
157_N	165_K	0.541	0.56
71_V	75_I	0.541	0.56
75_I	163_P	0.541	0.56
69_W	73_I	0.539	0.56
23_K	140_T	0.539	0.56
14_G	51_A	0.539	0.56
53_Y	73_I	0.537	0.56
14_G	59_I	0.537	0.56
129_S	152_F	0.536	0.56
60_K	71_V	0.535	0.56
35_P	38_F	0.535	0.56
181_R	195_K	0.534	0.55
69_W	77_E	0.534	0.55
113_I	213_E	0.533	0.55
14_G	50_N	0.532	0.55
127_S	163_P	0.531	0.55
46_E	73_I	0.531	0.55
39_I	69_W	0.530	0.55
13_C	57_I	0.530	0.55
53_Y	59_I	0.528	0.55
144_V	152_F	0.525	0.54
39_I	45_G	0.525	0.54
34_T	91_E	0.523	0.54
25_L	28_T	0.522	0.54
91_E	114_D	0.517	0.53
16_G	20_I	0.516	0.53
41_A	44_L	0.515	0.53
180_V	211_F	0.514	0.53
126_G	154_K	0.513	0.53
87_R	91_E	0.512	0.52
34_T	117_Q	0.511	0.52
189_V	218_K	0.509	0.52
37_D	120_S	0.509	0.52
11_L	40_S	0.508	0.52
34_T	45_G	0.508	0.52
24_L	74_Y	0.508	0.52
67_L	70_G	0.508	0.52
158_K	165_K	0.506	0.52
152_F	159_D	0.505	0.51
47_L	141_N	0.500	0.51

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3c6fA	4	0.5974	100	0.377	Contact Map
4b4aA	1	0.3247	32.4	0.956	Contact Map
4pk1A	1	0.5801	8.9	0.966	Contact Map
2mqdA	1	0.2511	8.5	0.966	Contact Map
4bbjA	1	0.8918	8.1	0.966	Contact Map
4c00A	1	0.6104	7.9	0.966	Contact Map
1ci0A	2	0.2381	7.8	0.967	Contact Map
2pwjA	2	0.6061	7.3	0.967	Contact Map
2x8xX	1	0.6494	6.1	0.968	Contact Map
1u9lA	1	0.2294	6	0.968	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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