YCZJ - BACSU - GREMLIN Contacts

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YCZJ - Uncharacterized protein YczJ

UniProt:	O31484	Sequences: MVREAAMLHIKEGLEQEFEDAFRQAAPIISGMKGYITHSLSKCMEETHKYLLLVEWETLEDHTEGFRGSSEYQEWKALLHRFYTPFPTVEHFQDV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	95 (93)
Sequences:	534 (373)
Seq/√Len:	38.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
19_E	50_Y	3.595	1.00
35_Y	38_H	3.369	1.00
74_E	77_A	3.351	1.00
61_D	65_G	2.979	1.00
21_A	82_F	2.894	1.00
39_S	55_E	2.817	1.00
36_I	57_E	2.786	1.00
37_T	55_E	2.724	1.00
14_L	17_E	2.689	1.00
59_L	63_T	2.580	1.00
15_E	48_H	2.445	1.00
11_K	14_L	2.306	1.00
32_M	71_E	2.257	1.00
49_K	90_E	2.228	0.99
28_I	32_M	2.116	0.99
60_E	63_T	2.018	0.99
43_C	92_F	2.015	0.99
5_A	51_L	1.946	0.98
58_T	61_D	1.601	0.95
64_E	68_G	1.571	0.94
26_A	35_Y	1.511	0.93
22_F	40_L	1.482	0.92
9_H	49_K	1.476	0.92
15_E	42_K	1.442	0.91
31_G	71_E	1.411	0.90
80_H	83_Y	1.287	0.86
6_A	89_V	1.275	0.85
26_A	39_S	1.200	0.82
60_E	64_E	1.182	0.81
72_Y	80_H	1.128	0.77
79_L	83_Y	1.126	0.77
29_I	54_V	1.126	0.77
33_K	61_D	1.120	0.77
7_M	49_K	1.115	0.77
7_M	51_L	1.104	0.76
20_D	44_M	1.074	0.74
3_R	53_L	1.065	0.73
57_E	61_D	1.045	0.72
2_V	44_M	1.043	0.72
24_Q	74_E	1.033	0.71
6_A	54_V	1.026	0.70
45_E	91_H	1.019	0.70
81_R	86_F	0.997	0.68
33_K	65_G	0.945	0.64
22_F	79_L	0.936	0.63
67_R	75_W	0.910	0.61
12_E	70_S	0.888	0.59
8_L	83_Y	0.870	0.57
14_L	82_F	0.863	0.57
67_R	72_Y	0.858	0.56
34_G	87_P	0.831	0.54
26_A	38_H	0.830	0.54
43_C	90_E	0.823	0.53
7_M	92_F	0.819	0.53
24_Q	27_P	0.818	0.53
43_C	46_E	0.815	0.53
46_E	49_K	0.814	0.52
80_H	86_F	0.812	0.52
83_Y	86_F	0.809	0.52
44_M	47_T	0.788	0.50
10_I	48_H	0.773	0.49
43_C	91_H	0.756	0.47
8_L	79_L	0.756	0.47
28_I	71_E	0.748	0.46
63_T	68_G	0.738	0.46
72_Y	83_Y	0.726	0.45
76_K	86_F	0.725	0.44
51_L	90_E	0.719	0.44
48_H	84_T	0.716	0.44
29_I	82_F	0.715	0.44
73_Q	84_T	0.710	0.43
44_M	77_A	0.702	0.42
5_A	35_Y	0.698	0.42
67_R	78_L	0.697	0.42
47_T	70_S	0.690	0.41
9_H	46_E	0.687	0.41
30_S	35_Y	0.678	0.40
20_D	77_A	0.674	0.40
5_A	49_K	0.669	0.40
15_E	47_T	0.657	0.38
8_L	86_F	0.648	0.38
31_G	93_Q	0.647	0.38
72_Y	76_K	0.645	0.37
80_H	85_P	0.641	0.37
23_R	44_M	0.641	0.37
51_L	92_F	0.639	0.37
72_Y	86_F	0.634	0.37
36_I	55_E	0.629	0.36
4_E	67_R	0.623	0.36
30_S	59_L	0.621	0.35
72_Y	75_W	0.609	0.34
33_K	58_T	0.605	0.34
76_K	80_H	0.602	0.34
63_T	90_E	0.602	0.34
85_P	88_T	0.598	0.34
12_E	15_E	0.594	0.33
8_L	87_P	0.589	0.33
17_E	20_D	0.589	0.33
12_E	48_H	0.589	0.33
20_D	23_R	0.582	0.32
34_G	75_W	0.582	0.32
11_K	84_T	0.580	0.32
80_H	89_V	0.576	0.32
3_R	92_F	0.569	0.31
23_R	58_T	0.568	0.31
12_E	77_A	0.564	0.31
10_I	81_R	0.564	0.31
13_G	70_S	0.558	0.30
58_T	63_T	0.557	0.30
34_G	61_D	0.555	0.30
6_A	34_G	0.554	0.30
19_E	42_K	0.553	0.30
5_A	41_S	0.550	0.30
28_I	78_L	0.550	0.30
25_A	78_L	0.547	0.30
20_D	60_E	0.547	0.30
13_G	17_E	0.547	0.30
29_I	75_W	0.540	0.29
20_D	37_T	0.539	0.29
44_M	91_H	0.538	0.29
31_G	78_L	0.538	0.29
17_E	21_A	0.535	0.29
50_Y	65_G	0.533	0.29
53_L	65_G	0.530	0.28
29_I	80_H	0.523	0.28
31_G	54_V	0.518	0.27
33_K	70_S	0.516	0.27
29_I	38_H	0.516	0.27
29_I	35_Y	0.516	0.27
19_E	25_A	0.513	0.27
38_H	41_S	0.513	0.27
10_I	54_V	0.510	0.27
25_A	79_L	0.510	0.27
14_L	21_A	0.509	0.27
17_E	23_R	0.508	0.27
8_L	85_P	0.504	0.26
24_Q	73_Q	0.502	0.26
26_A	46_E	0.502	0.26
25_A	43_C	0.502	0.26
79_L	86_F	0.500	0.26

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2cb2A	6	1	99.9	0.463	Contact Map
4ae5A	1	0.9474	99.7	0.578	Contact Map
3gz7A	2	1	99.7	0.579	Contact Map
4fvcA	1	0.8947	99.6	0.59	Contact Map
1tz0A	3	0.9789	99.6	0.6	Contact Map
1iujA	4	0.9895	99.6	0.604	Contact Map
2gffA	2	0.9895	99.5	0.611	Contact Map
4hl9A	2	0.9789	99.5	0.614	Contact Map
2omoA	2	0.9895	99.5	0.614	Contact Map
4zosA	2	0.9895	99.5	0.617	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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