YBGF - BACSU - GREMLIN Contacts

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YBGF - Uncharacterized amino acid permease YbgF

UniProt:	O31462	Sequences: MNSAHNKNETTFQRSMKSRHLFMLSLGGVIGTGLFLSSGYTIQQAGPAGTILAYLVGAGIVYLVMLCLGELSVAMPVTGAFHTYAAKYIGPGTGFTVAWLYWLTWTVALGSEFTAAGLLMQRWFPHTSVWMWSAVFALFIFLLNAFSVKFFAESEFWFSSIKVLAIVLFILLGGSAMFGIIPIKGGEAAPMLSNFTAEGGLFPNGFVPILMTMLSVNFAFSGTELIGIAAGESVDPDKTIPKAIKTTVWRLSLFFVGTIFVLSGLIPIQDAGVIKSPFVAVFDRVGVPYAADIMNFVILTAILSAANSGLYASSRMLWSLSKEKTLHPTFAKLTSKGTPFNALVFSMIGGILSLLSSVFAPDTVYVVLVSISGFAVVVVWMGIAASQFMFRKRYIEAGNKVTDLKYRTPLYPFVPIAAFLLCLASVVGIAFDPNQRIALYCGVPFMAICYAIYYVKNRKSQPAADMTHSK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	470 (425)
Sequences:	24816 (16301)
Seq/√Len:	790.7

ECOLI - MMUP LYSP GABP YIFK AROP PROY ANSP PHEP CYCA PLAP PUUP POTE FRLA ADIC GADC YCAM YJEM YGJI YBAT ARCD CADB YJEH TNAB
BACSU - YBGF ROCE HUTM ROCC YBXG AAPA GABP YDGF YTNA YVBW YHDG ASPP YBEC YCGH YFNA STET ARCD YECA YDAO GERBB GERAB YNDE GERKB YFKT
HALSA - Q9HHU7 Q9HQB3 Q9HSL5
SULSO - Q97U05 Q97WS3 Q97X49 Q97Z63 Q97XM0 Q97ZB5 Q7LXI7 Q97VA6 Q97WD4 Q97U33 Q97VA8 Q97VR4 Q97Y76 Q97YX9 Q97YN3 Q97U39

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
141_F	347_M	4.448	1.00
329_T	341_N	4.350	1.00
389_M	393_R	3.423	1.00
58_A	252_S	3.284	1.00
332_K	341_N	3.079	1.00
238_K	242_K	3.070	1.00
381_M	419_F	2.988	1.00
17_K	234_V	2.889	1.00
82_H	323_E	2.852	1.00
233_S	239_T	2.783	1.00
321_S	331_A	2.698	1.00
173_G	261_V	2.696	1.00
235_D	238_K	2.685	1.00
98_A	320_L	2.649	1.00
22_F	246_T	2.627	1.00
334_T	340_F	2.621	1.00
134_A	351_I	2.591	1.00
329_T	332_K	2.470	1.00
18_S	246_T	2.436	1.00
231_G	322_K	2.435	1.00
171_L	175_S	2.406	1.00
70_E	391_R	2.374	1.00
289_Y	293_I	2.330	1.00
450_Y	454_Y	2.233	1.00
142_L	146_F	2.219	1.00
86_A	94_G	2.204	1.00
344_V	348_I	2.203	1.00
318_W	322_K	2.198	1.00
384_A	418_A	2.193	1.00
232_E	315_R	2.186	1.00
138_L	351_I	2.145	1.00
440_Y	444_P	2.144	1.00
18_S	22_F	2.115	1.00
18_S	239_T	2.112	1.00
141_F	343_L	2.103	1.00
149_K	153_E	2.100	1.00
21_L	233_S	2.092	1.00
416_I	420_L	2.062	1.00
280_A	283_D	2.053	1.00
145_A	340_F	2.033	1.00
89_I	389_M	2.029	1.00
446_M	450_Y	2.012	1.00
134_A	354_L	2.007	1.00
22_F	250_R	1.991	1.00
242_K	246_T	1.989	1.00
12_F	333_L	1.983	1.00
86_A	91_P	1.972	1.00
133_S	354_L	1.954	1.00
267_P	270_D	1.946	1.00
160_S	164_L	1.940	1.00
41_T	50_T	1.935	1.00
17_K	20_H	1.923	1.00
67_C	384_A	1.913	1.00
59_G	63_L	1.910	1.00
102_W	346_S	1.910	1.00
324_K	328_P	1.897	1.00
330_F	345_F	1.886	1.00
89_I	385_A	1.876	1.00
270_D	284_R	1.869	1.00
451_A	455_V	1.844	1.00
245_K	249_W	1.819	1.00
413_F	417_A	1.791	1.00
138_L	347_M	1.772	1.00
280_A	284_R	1.768	1.00
144_N	307_N	1.763	1.00
85_A	97_V	1.758	1.00
235_D	239_T	1.749	1.00
20_H	156_F	1.742	1.00
16_M	20_H	1.719	1.00
145_A	344_V	1.711	1.00
334_T	338_T	1.700	1.00
420_L	424_A	1.683	1.00
25_S	247_T	1.679	1.00
90_G	93_T	1.672	1.00
97_V	382_G	1.666	1.00
53_A	212_T	1.655	1.00
137_A	350_G	1.629	1.00
385_A	419_F	1.620	1.00
164_L	168_L	1.620	1.00
447_A	451_A	1.619	1.00
191_M	194_N	1.614	1.00
389_M	392_K	1.593	1.00
448_I	452_I	1.583	1.00
60_I	421_L	1.570	1.00
192_L	195_F	1.567	1.00
109_L	350_G	1.566	1.00
452_I	456_K	1.565	1.00
113_F	306_A	1.561	1.00
249_W	253_L	1.557	1.00
229_A	311_Y	1.515	1.00
235_D	242_K	1.508	1.00
436_R	439_L	1.507	1.00
317_L	342_A	1.507	1.00
120_M	132_W	1.504	1.00
283_D	291_A	1.497	1.00
163_V	167_V	1.468	1.00
341_N	345_F	1.465	1.00
165_A	297_V	1.463	1.00
116_A	299_L	1.461	1.00
85_A	382_G	1.459	1.00
89_I	93_T	1.458	1.00
63_L	417_A	1.452	1.00
59_G	417_A	1.449	1.00
134_A	138_L	1.447	1.00
174_G	261_V	1.446	1.00
137_A	347_M	1.423	1.00
78_T	231_G	1.417	1.00
116_A	136_F	1.411	1.00
313_S	346_S	1.409	1.00
318_W	333_L	1.406	1.00
12_F	318_W	1.405	1.00
13_Q	337_G	1.403	1.00
450_Y	453_Y	1.402	1.00
57_G	216_V	1.401	1.00
328_P	331_A	1.393	1.00
385_A	389_M	1.393	1.00
65_M	248_V	1.383	1.00
449_C	453_Y	1.374	1.00
328_P	332_K	1.364	1.00
20_H	152_A	1.358	1.00
276_S	280_A	1.353	1.00
314_S	343_L	1.352	1.00
113_F	137_A	1.349	1.00
239_T	242_K	1.326	1.00
332_K	340_F	1.325	1.00
141_F	344_V	1.324	1.00
410_L	414_V	1.323	1.00
88_Y	386_S	1.317	1.00
65_M	244_I	1.311	1.00
16_M	21_L	1.304	1.00
75_M	87_K	1.303	1.00
236_P	241_P	1.301	1.00
177_M	264_G	1.289	1.00
449_C	452_I	1.287	1.00
191_M	195_F	1.286	1.00
170_I	257_G	1.285	1.00
292_D	296_F	1.283	1.00
66_L	245_K	1.281	1.00
18_S	242_K	1.280	1.00
64_V	384_A	1.278	1.00
253_L	257_G	1.275	1.00
411_Y	415_P	1.262	1.00
175_S	180_I	1.257	1.00
140_I	306_A	1.257	1.00
317_L	326_L	1.256	1.00
19_R	23_M	1.250	1.00
190_P	193_S	1.238	1.00
444_P	447_A	1.236	1.00
67_C	415_P	1.231	1.00
130_W	134_A	1.226	1.00
29_V	251_L	1.209	1.00
51_I	260_F	1.201	1.00
83_T	87_K	1.201	1.00
445_F	449_C	1.197	1.00
169_F	173_G	1.197	1.00
92_G	453_Y	1.192	1.00
77_V	83_T	1.192	1.00
173_G	265_L	1.189	1.00
437_I	440_Y	1.188	1.00
16_M	152_A	1.186	1.00
74_A	404_L	1.184	1.00
283_D	288_P	1.182	1.00
395_I	404_L	1.176	1.00
274_I	280_A	1.174	1.00
36_L	115_A	1.174	1.00
392_K	395_I	1.172	1.00
174_G	178_F	1.172	1.00
126_H	129_V	1.170	1.00
234_V	239_T	1.169	1.00
112_E	305_A	1.166	1.00
68_L	81_F	1.165	1.00
446_M	449_C	1.162	1.00
412_P	416_I	1.161	1.00
424_A	428_G	1.161	1.00
444_P	448_I	1.150	1.00
102_W	317_L	1.147	1.00
410_L	413_F	1.146	1.00
48_A	209_I	1.145	1.00
25_S	226_I	1.143	1.00
154_S	158_F	1.140	1.00
143_L	154_S	1.140	1.00
95_F	99_W	1.137	1.00
21_L	243_A	1.136	1.00
24_L	229_A	1.132	1.00
388_F	416_I	1.120	1.00
205_G	208_P	1.119	1.00
438_A	442_G	1.118	1.00
128_S	131_M	1.115	1.00
436_R	440_Y	1.115	1.00
131_M	135_V	1.114	1.00
155_E	307_N	1.109	1.00
77_V	87_K	1.104	1.00
341_N	344_V	1.101	1.00
168_L	172_L	1.094	1.00
42_I	50_T	1.084	1.00
381_M	423_L	1.081	1.00
85_A	93_T	1.077	1.00
15_S	234_V	1.075	1.00
404_L	407_R	1.075	1.00
387_Q	415_P	1.070	1.00
153_E	157_W	1.066	1.00
82_H	319_S	1.066	1.00
178_F	181_I	1.064	1.00
167_V	171_L	1.064	1.00
72_S	84_Y	1.061	1.00
87_K	394_Y	1.054	1.00
117_G	132_W	1.050	1.00
423_L	427_V	1.049	1.00
437_I	444_P	1.046	1.00
450_Y	456_K	1.042	1.00
26_L	250_R	1.038	1.00
191_M	196_T	1.037	1.00
138_L	142_L	1.036	1.00
413_F	416_I	1.036	1.00
402_T	405_K	1.030	1.00
70_E	73_V	1.029	1.00
322_K	331_A	1.026	1.00
135_V	139_F	1.022	1.00
145_A	338_T	1.022	1.00
435_Q	438_A	1.011	1.00
333_L	337_G	1.010	1.00
26_L	251_L	1.009	1.00
430_A	434_N	1.008	1.00
148_V	311_Y	1.005	1.00
348_I	352_L	1.000	1.00
230_A	240_I	0.996	1.00
406_Y	409_P	0.992	1.00
74_A	402_T	0.991	1.00
419_F	423_L	0.986	1.00
434_N	437_I	0.985	1.00
381_M	422_C	0.971	1.00
51_I	263_S	0.967	1.00
55_L	256_V	0.966	1.00
402_T	407_R	0.962	1.00
158_F	304_S	0.961	1.00
141_F	145_A	0.961	1.00
381_M	385_A	0.957	1.00
175_S	179_G	0.957	1.00
163_V	254_F	0.951	1.00
391_R	395_I	0.949	1.00
30_I	33_G	0.942	1.00
111_S	218_F	0.942	1.00
267_P	284_R	0.941	1.00
426_V	429_I	0.939	1.00
162_K	301_A	0.935	1.00
224_E	228_I	0.929	1.00
221_S	376_V	0.928	1.00
79_G	83_T	0.928	1.00
286_G	290_A	0.927	1.00
288_P	292_D	0.925	1.00
310_L	347_M	0.923	1.00
111_S	369_V	0.920	1.00
145_A	334_T	0.916	1.00
433_P	436_R	0.915	1.00
140_I	307_N	0.915	1.00
23_M	156_F	0.912	1.00
127_T	131_M	0.911	1.00
110_G	113_F	0.908	1.00
120_M	299_L	0.906	1.00
442_G	446_M	0.901	1.00
139_F	303_L	0.900	1.00
190_P	194_N	0.894	1.00
260_F	264_G	0.891	1.00
252_S	256_V	0.890	1.00
90_G	454_Y	0.890	1.00
210_L	424_A	0.890	1.00
418_A	422_C	0.888	1.00
340_F	344_V	0.884	1.00
448_I	454_Y	0.884	1.00
246_T	250_R	0.880	1.00
384_A	419_F	0.879	1.00
332_K	335_S	0.875	1.00
63_L	414_V	0.874	1.00
15_S	149_K	0.873	1.00
443_V	447_A	0.873	1.00
116_A	303_L	0.871	1.00
99_W	326_L	0.869	1.00
452_I	455_V	0.869	1.00
170_I	174_G	0.866	1.00
451_A	454_Y	0.866	1.00
433_P	437_I	0.866	1.00
92_G	96_T	0.861	1.00
20_H	153_E	0.861	1.00
403_D	407_R	0.860	1.00
12_F	232_E	0.856	1.00
170_I	261_V	0.856	1.00
432_D	436_R	0.855	1.00
73_V	405_K	0.850	1.00
19_R	156_F	0.848	1.00
12_F	315_R	0.848	1.00
276_S	279_V	0.848	1.00
225_L	312_A	0.846	1.00
86_A	323_E	0.845	1.00
132_W	135_V	0.844	1.00
177_M	180_I	0.842	1.00
62_Y	66_L	0.841	1.00
30_I	35_F	0.839	1.00
206_F	209_I	0.837	1.00
120_M	124_F	0.837	1.00
287_V	290_A	0.833	1.00
93_T	382_G	0.830	1.00
58_A	220_F	0.828	1.00
265_L	281_V	0.827	1.00
326_L	330_F	0.825	1.00
18_S	243_A	0.825	1.00
79_G	82_H	0.824	1.00
71_L	387_Q	0.822	1.00
438_A	444_P	0.820	1.00
435_Q	439_L	0.819	1.00
52_L	209_I	0.817	1.00
142_L	145_A	0.817	1.00
396_E	404_L	0.812	1.00
371_I	375_A	0.812	1.00
432_D	435_Q	0.811	1.00
347_M	351_I	0.810	1.00
101_Y	105_W	0.807	1.00
330_F	341_N	0.807	1.00
55_L	59_G	0.807	1.00
90_G	94_G	0.805	1.00
130_W	354_L	0.804	1.00
424_A	427_V	0.799	1.00
153_E	156_F	0.797	1.00
409_P	413_F	0.797	1.00
277_P	282_F	0.793	1.00
392_K	412_P	0.792	1.00
63_L	67_C	0.790	1.00
437_I	450_Y	0.786	1.00
439_L	442_G	0.784	1.00
211_M	215_S	0.783	1.00
117_G	133_S	0.782	1.00
45_A	48_A	0.781	1.00
403_D	406_Y	0.778	1.00
140_I	310_L	0.777	1.00
85_A	386_S	0.777	1.00
394_Y	402_T	0.776	1.00
194_N	197_A	0.776	1.00
174_G	257_G	0.776	1.00
221_S	380_W	0.774	1.00
348_I	351_I	0.771	1.00
116_A	120_M	0.771	1.00
169_F	282_F	0.768	1.00
175_S	178_F	0.765	1.00
415_P	419_F	0.764	1.00
418_A	421_L	0.764	1.00
453_Y	456_K	0.760	1.00
114_T	368_L	0.756	1.00
30_I	162_K	0.754	1.00
282_F	285_V	0.754	1.00
62_Y	245_K	0.754	1.00
435_Q	440_Y	0.751	1.00
335_S	340_F	0.751	1.00
106_T	349_G	0.751	1.00
447_A	450_Y	0.750	1.00
29_V	247_T	0.749	1.00
235_D	241_P	0.748	1.00
192_L	264_G	0.748	1.00
71_L	84_Y	0.747	1.00
177_M	261_V	0.747	1.00
388_F	392_K	0.744	1.00
144_N	343_L	0.744	1.00
277_P	285_V	0.742	1.00
22_F	243_A	0.741	1.00
146_F	150_F	0.737	1.00
31_G	35_F	0.734	1.00
434_N	438_A	0.733	1.00
241_P	244_I	0.730	1.00
440_Y	443_V	0.730	1.00
116_A	302_I	0.729	1.00
68_L	383_I	0.728	1.00
34_L	258_T	0.724	1.00
334_T	337_G	0.722	1.00
15_S	148_V	0.721	1.00
47_P	263_S	0.718	1.00
277_P	281_V	0.716	1.00
27_G	159_S	0.715	1.00
15_S	19_R	0.715	1.00
137_A	354_L	0.714	1.00
88_Y	389_M	0.713	1.00
52_L	56_V	0.713	1.00
282_F	287_V	0.710	1.00
330_F	342_A	0.710	1.00
121_Q	125_P	0.708	1.00
64_V	422_C	0.706	1.00
415_P	422_C	0.705	1.00
412_P	415_P	0.705	1.00
52_L	55_L	0.704	1.00
170_I	258_T	0.703	1.00
199_G	203_P	0.702	1.00
442_G	445_F	0.698	1.00
449_C	456_K	0.697	1.00
130_W	133_S	0.697	1.00
110_G	368_L	0.697	1.00
74_A	395_I	0.693	1.00
19_R	153_E	0.688	1.00
61_V	223_T	0.686	1.00
108_A	372_S	0.685	1.00
388_F	412_P	0.684	1.00
78_T	318_W	0.683	1.00
387_Q	391_R	0.682	1.00
314_S	342_A	0.681	1.00
138_L	141_F	0.680	1.00
339_P	342_A	0.679	1.00
144_N	311_Y	0.678	1.00
152_A	156_F	0.677	1.00
240_I	244_I	0.677	1.00
289_Y	292_D	0.677	1.00
434_N	439_L	0.676	1.00
117_G	120_M	0.676	1.00
317_L	345_F	0.674	1.00
329_T	345_F	0.674	1.00
150_F	153_E	0.673	1.00
448_I	451_A	0.671	1.00
439_L	444_P	0.670	1.00
310_L	314_S	0.670	1.00
394_Y	404_L	0.668	1.00
445_F	453_Y	0.667	1.00
411_Y	414_V	0.667	1.00
439_L	443_V	0.667	1.00
441_C	445_F	0.667	1.00
436_R	442_G	0.664	1.00
70_E	409_P	0.662	1.00
441_C	444_P	0.661	1.00
82_H	86_A	0.661	1.00
140_I	303_L	0.660	1.00
37_S	369_V	0.659	1.00
152_A	307_N	0.658	1.00
246_T	249_W	0.654	1.00
437_I	442_G	0.653	1.00
51_I	256_V	0.653	1.00
422_C	425_S	0.652	1.00
136_F	306_A	0.652	1.00
227_G	244_I	0.651	1.00
38_S	259_I	0.651	1.00
134_A	355_L	0.650	1.00
74_A	405_K	0.650	1.00
198_E	201_L	0.647	1.00
122_R	295_N	0.646	1.00
250_R	254_F	0.646	1.00
425_S	429_I	0.645	1.00
315_R	318_W	0.644	1.00
145_A	343_L	0.643	1.00
12_F	15_S	0.642	1.00
51_I	55_L	0.640	1.00
438_A	446_M	0.640	1.00
88_Y	390_F	0.640	1.00
231_G	318_W	0.639	1.00
258_T	262_L	0.639	1.00
50_T	259_I	0.638	1.00
274_I	277_P	0.638	1.00
28_G	309_G	0.638	1.00
72_S	227_G	0.638	1.00
190_P	195_F	0.637	1.00
426_V	434_N	0.637	1.00
261_V	264_G	0.635	1.00
404_L	408_T	0.635	1.00
66_L	414_V	0.632	1.00
82_H	98_A	0.631	1.00
66_L	409_P	0.630	1.00
137_A	351_I	0.630	1.00
321_S	330_F	0.630	1.00
210_L	428_G	0.630	1.00
190_P	196_T	0.628	1.00
28_G	308_S	0.628	1.00
221_S	224_E	0.628	1.00
388_F	415_P	0.627	1.00
106_T	346_S	0.627	1.00
54_Y	219_A	0.626	1.00
313_S	317_L	0.626	1.00
148_V	229_A	0.622	1.00
100_L	379_V	0.621	1.00
194_N	198_E	0.621	1.00
22_F	25_S	0.618	1.00
408_T	411_Y	0.617	1.00
136_F	140_I	0.616	1.00
161_I	297_V	0.615	1.00
278_F	282_F	0.614	1.00
65_M	223_T	0.614	1.00
336_K	340_F	0.613	1.00
431_F	434_N	0.612	1.00
386_S	390_F	0.612	1.00
105_W	309_G	0.611	1.00
447_A	453_Y	0.611	1.00
448_I	455_V	0.609	1.00
107_V	110_G	0.609	1.00
444_P	451_A	0.608	1.00
40_Y	366_V	0.607	1.00
71_L	88_Y	0.605	1.00
448_I	453_Y	0.605	1.00
107_V	371_I	0.604	1.00
422_C	426_V	0.604	1.00
106_T	110_G	0.604	1.00
237_D	405_K	0.603	1.00
25_S	29_V	0.603	1.00
89_I	386_S	0.602	1.00
431_F	435_Q	0.602	1.00
69_G	73_V	0.600	1.00
81_F	224_E	0.599	1.00
257_G	261_V	0.598	1.00
119_L	279_V	0.598	1.00
57_G	220_F	0.597	1.00
433_P	440_Y	0.597	1.00
172_L	176_A	0.596	1.00
108_A	111_S	0.596	1.00
147_S	150_F	0.596	1.00
439_L	446_M	0.594	1.00
391_R	411_Y	0.593	1.00
417_A	420_L	0.592	1.00
206_F	210_L	0.591	1.00
407_R	412_P	0.591	1.00
82_H	94_G	0.591	1.00
110_G	353_S	0.590	1.00
395_I	402_T	0.589	1.00
120_M	136_F	0.588	1.00
172_L	287_V	0.588	1.00
232_E	339_P	0.588	1.00
177_M	265_L	0.588	1.00
443_V	446_M	0.586	1.00
437_I	441_C	0.586	1.00
146_F	336_K	0.586	1.00
435_Q	442_G	0.584	1.00
193_S	196_T	0.583	1.00
392_K	396_E	0.579	1.00
440_Y	445_F	0.579	1.00
442_G	447_A	0.579	1.00
161_I	165_A	0.579	1.00
141_F	310_L	0.579	1.00
236_P	239_T	0.578	1.00
97_V	379_V	0.577	1.00
72_S	240_I	0.576	1.00
67_C	418_A	0.576	1.00
104_T	376_V	0.576	1.00
57_G	217_N	0.575	1.00
56_V	213_M	0.575	1.00
44_Q	211_M	0.575	1.00
445_F	448_I	0.574	1.00
81_F	228_I	0.572	1.00
70_E	406_Y	0.572	1.00
301_A	304_S	0.572	1.00
250_R	253_L	0.569	1.00
19_R	22_F	0.568	1.00
44_Q	47_P	0.568	1.00
396_E	403_D	0.566	1.00
296_F	300_T	0.563	1.00
228_I	312_A	0.561	1.00
159_S	162_K	0.560	1.00
65_M	69_G	0.560	1.00
352_L	355_L	0.558	1.00
208_P	211_M	0.557	1.00
30_I	37_S	0.557	1.00
418_A	429_I	0.556	1.00
119_L	298_I	0.556	1.00
233_S	240_I	0.555	1.00
11_T	14_R	0.554	1.00
419_F	422_C	0.554	1.00
375_A	379_V	0.553	1.00
258_T	278_F	0.553	1.00
238_K	241_P	0.550	1.00
266_I	270_D	0.550	1.00
122_R	125_P	0.550	1.00
67_C	408_T	0.549	1.00
115_A	119_L	0.548	1.00
151_F	311_Y	0.548	1.00
26_L	159_S	0.547	1.00
156_F	160_S	0.547	1.00
329_T	333_L	0.546	1.00
89_I	92_G	0.545	1.00
31_G	255_F	0.545	1.00
315_R	333_L	0.543	1.00
434_N	450_Y	0.542	1.00
200_G	203_P	0.541	1.00
447_A	456_K	0.541	1.00
197_A	201_L	0.540	1.00
438_A	445_F	0.539	1.00
16_M	148_V	0.539	1.00
105_W	312_A	0.538	1.00
64_V	224_E	0.535	1.00
440_Y	450_Y	0.534	1.00
390_F	395_I	0.534	1.00
450_Y	455_V	0.532	1.00
440_Y	446_M	0.532	1.00
420_L	423_L	0.532	1.00
376_V	379_V	0.532	1.00
221_S	372_S	0.531	1.00
436_R	443_V	0.531	1.00
421_L	425_S	0.531	1.00
317_L	321_S	0.530	1.00
197_A	200_G	0.529	1.00
195_F	198_E	0.528	1.00
109_L	113_F	0.528	1.00
24_L	27_G	0.528	1.00
155_E	304_S	0.526	1.00
150_F	154_S	0.526	1.00
224_E	380_W	0.526	1.00
23_M	159_S	0.524	1.00
108_A	112_E	0.523	1.00
113_F	140_I	0.522	1.00
40_Y	44_Q	0.520	1.00
28_G	225_L	0.520	1.00
396_E	402_T	0.520	1.00
34_L	37_S	0.519	1.00
355_L	358_V	0.519	1.00
293_I	297_V	0.518	1.00
138_L	344_V	0.516	1.00
255_F	259_I	0.516	1.00
48_A	201_L	0.516	1.00
123_W	296_F	0.516	1.00
310_L	343_L	0.515	1.00
80_A	227_G	0.515	1.00
415_P	429_I	0.514	1.00
100_L	104_T	0.514	1.00
136_F	303_L	0.512	1.00
53_A	56_V	0.512	1.00
345_F	349_G	0.512	1.00
390_F	394_Y	0.512	1.00
47_P	51_I	0.511	1.00
440_Y	447_A	0.511	1.00
393_R	396_E	0.511	1.00
278_F	281_V	0.510	1.00
100_L	378_V	0.510	1.00
177_M	181_I	0.510	1.00
226_I	240_I	0.510	1.00
15_S	337_G	0.509	1.00
35_F	162_K	0.508	1.00
135_V	138_L	0.508	1.00
51_I	54_Y	0.508	1.00
139_F	143_L	0.508	1.00
366_V	369_V	0.506	1.00
232_E	333_L	0.505	1.00
374_F	426_V	0.504	1.00
436_R	444_P	0.503	1.00
112_E	306_A	0.503	1.00
408_T	415_P	0.503	1.00
89_I	94_G	0.503	1.00
191_M	264_G	0.503	1.00
314_S	346_S	0.501	1.00
198_E	203_P	0.501	1.00
30_I	254_F	0.501	1.00
14_R	234_V	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l1lA	2	0.8872	100	0.292	Contact Map
4djkA	2	0.8745	100	0.355	Contact Map
3giaA	1	0.9043	100	0.36	Contact Map
3dh4A	3	0.9149	99.1	0.85	Contact Map
2xq2A	2	0.917	99	0.855	Contact Map
2jlnA	1	0.8979	98.9	0.861	Contact Map
4wgvA	2	0.7809	97.9	0.895	Contact Map
4xp4A	1	0.9149	97.6	0.902	Contact Map
2a65A	2	0.9234	97.3	0.908	Contact Map
4us3A	1	0.8404	97	0.911	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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